CuGenDBv2

Gene ID	Sed0025293
Organism	Sechium edule (Chayote v1)
Description	cyclic phosphodiesterase-like
Genome location	LG14:23614966..23617536
RNA-Seq Expression	Sed0025293
Synteny	Sed0025293
Gene Ontology terms	GO:0009187 - cyclic nucleotide metabolic process (biological process) GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity (molecular function)
InterPro domains	IPR009097 - Cyclic phosphodiesterase IPR012386 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581386.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]

6.5e-78

73.33

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Query:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV
        NPE   IQ  EGE N     +YS+WALPP+DV  RI+TLM SLR+EFGGPQFEPHITVVGA+RL  DDAL+KFRSAC GLK +QATVD VS GT +YQCV
Subjt:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV

Query:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN
        FLLIHPTT++VETS+HCCG FGYNN+TPYMPHLSLLYA++S+E+KK+A+E+A+KL+E I+GLSFP+TRLALYKTD  D TLKSWEKIAE DLPS+
Subjt:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN

KAG6594517.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]

5.0e-78

72.16

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Query:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV
        NP    I+ CEGE       LYS+WALPP+DV T+I +LM SLR+EFGGP+FEPHITVVGA+RL P DAL+KFRSAC G+K +QATVD+VSIGT +YQCV
Subjt:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV

Query:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPS
        FLLIHPTT++V+ S+HCCG FGYNN+TPYMPHLSLLYA++S+E KK+A+EIADKLNE ++GL  PVTRLALYKTD  D TLKSWEKIAEHDLPS
Subjt:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPS

XP_022926309.1 cyclic phosphodiesterase-like [Cucurbita moschata]

6.5e-78

71.79

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Query:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV
        NP    I+ CEGE       LYS+WALPP+DV T+I +LM SLR+EFGGP+FEPHITVVGA+RL P DAL+KFRSAC G+K +QATVD+VSIGT +YQCV
Subjt:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV

Query:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN
        FLLIHPTT++V+ S+HCCG FGYNN+TPYMPHLSLLYA++S+E KK+A+EIADKLNE ++GL  PVTRLALYKTD  D TLKSWEKIAEHDLPS+
Subjt:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN

XP_022978766.1 cyclic phosphodiesterase-like [Cucurbita maxima]

8.5e-78

73.85

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Query:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV
        NPE   IQ  EGE N     +YS+WALPP+DV  RI+TLM SLR+EFGGPQFEPHITVVGA+RL  DDAL+KFRSAC GLK +QATVD VS GT +YQCV
Subjt:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV

Query:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN
        FLLIHPTTQ+VETS+HCCG FGY N+TPYMPHLSLLYA++S+E+KK+A+E+A+KL+E I+GLSFPVTRLALYKTD  D TLKSWEKIAE DLPS+
Subjt:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN

XP_038882567.1 cyclic phosphodiesterase-like [Benincasa hispida]

1.0e-78

72.82

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Query:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV
        NPE   IQ  E ENN     +YS+WALPP+DV  RIK LM SLR+EFGGPQFEPHITVVGA+RL PDDAL+KFRSAC GLK +QATVD VS GT +YQCV
Subjt:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV

Query:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN
        FLLIH TT++VETS+HCCG FGY N+TPYMPH+SLLYA++S+EKKK+A+ IADKL+E ++GL FP+TRLALYKTD ED TLKSWEKIAEH+LPS+
Subjt:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AYZ1 cyclic phosphodiesterase-like

4.4e-72

67.18

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Query:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV
        NPE   IQ+ E E N     +YS+WALPP+DV  RI+ LM SLR+EFGGPQFEPHITVVGA+RL  +DAL+KF +AC G+K +QATVD VS GT +YQCV
Subjt:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV

Query:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN
        FLLIHPTT++VETS+H C  FG+ N+TPYMPH+SLLYA +S+EKKK+A+EIADKL+E ++GL FP+TRLAL+KTD  D TLKSWEKI EHDL S+
Subjt:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN

A0A6J1EEQ8 cyclic phosphodiesterase-like

3.2e-78

71.79

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Query:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV
        NP    I+ CEGE       LYS+WALPP+DV T+I +LM SLR+EFGGP+FEPHITVVGA+RL P DAL+KFRSAC G+K +QATVD+VSIGT +YQCV
Subjt:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV

Query:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN
        FLLIHPTT++V+ S+HCCG FGYNN+TPYMPHLSLLYA++S+E KK+A+EIADKLNE ++GL  PVTRLALYKTD  D TLKSWEKIAEHDLPS+
Subjt:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN

A0A6J1EGC1 cyclic phosphodiesterase-like

1.7e-76

73.33

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Query:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV
        NPE   IQ  EGE N     +YS+WALPP+DV  RI+TLM SLR+EFGGPQFEPHITVVGA+RL  DDAL+KFRSAC GLK +QATVD VS GT +YQCV
Subjt:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV

Query:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN
        FLLIHPTTQ+VETS+HCCG FGY N TPYMPHLSLLYA++S+E+KK+A+E+A+KL+E I+GLSFP+TRLALYKTD  D TLKSWEKIAE DLPS+
Subjt:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN

A0A6J1INY2 cyclic phosphodiesterase-like

4.1e-78

73.85

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Query:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV
        NPE   IQ  EGE N     +YS+WALPP+DV  RI+TLM SLR+EFGGPQFEPHITVVGA+RL  DDAL+KFRSAC GLK +QATVD VS GT +YQCV
Subjt:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV

Query:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN
        FLLIHPTTQ+VETS+HCCG FGY N+TPYMPHLSLLYA++S+E+KK+A+E+A+KL+E I+GLSFPVTRLALYKTD  D TLKSWEKIAE DLPS+
Subjt:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN

A0A6J1KNB2 cyclic phosphodiesterase-like

7.8e-77

70.77

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Query:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV
        NP    I+ CEGE       LYS+WALPP+DV T+I +LM SLR+EFGGP+FEPHITVVGA+RL P DAL+KFRSAC G+K +QATVD+VSIGT +YQCV
Subjt:  NPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCV

Query:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN
        FLLIHPTT++V+ S+HCCG FG NN+TPYMPHLSLLYA++S+E KK+A+EIADKLNE ++GL  P+TRLALYKTD  D TLKSWEKIAEHDLPS+
Subjt:  FLLIHPTTQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN

SwissProt top hits

e value

%identity

Alignment

O04147 Cyclic phosphodiesterase

6.6e-49

54.76

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Query:  LYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCVFLLIHPTTQMVETSTHCCGL
        +YS+WALP ++   R K LME+LR+EF GP+F PH+TV  +  L  D+A   F SAC GLK + ATVDRVS GT ++QCVFLL+  T +++E   HC   
Subjt:  LYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCVFLLIHPTTQMVETSTHCCGL

Query:  FGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIA
        F  + TTPYMPHLSLLYA+L+EE+KK A+E A  L+  + GLSF + RLAL KTD ED TL++WE +A
Subjt:  FGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIA

Arabidopsis top hits

e value

%identity

Alignment

AT4G18930.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

4.7e-50

54.76

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Query:  LYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCVFLLIHPTTQMVETSTHCCGL
        +YS+WALP ++   R K LME+LR+EF GP+F PH+TV  +  L  D+A   F SAC GLK + ATVDRVS GT ++QCVFLL+  T +++E   HC   
Subjt:  LYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCVFLLIHPTTQMVETSTHCCGL

Query:  FGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIA
        F  + TTPYMPHLSLLYA+L+EE+KK A+E A  L+  + GLSF + RLAL KTD ED TL++WE +A
Subjt:  FGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIA

AT4G18940.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

2.9e-39

42.39

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Query:  ENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGAL--RLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCVFLLIHPTTQM
        E++     +Y++WA+P DDV  R++ LME LR+EFGGP F+PH+T+VG    +L   +A   F+SAC G K + ATVD+VS GT Y+QC+++ +  T ++
Subjt:  ENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGAL--RLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCVFLLIHPTTQM

Query:  VETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPS
        +  + H    F       Y+PH+S+LY DL+E +KKKA E A  L+  + GL+F + R+AL+ TD +   + SW K+ EH L S
Subjt:  VETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPS

Sequences

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CDS sequence

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ATGGCGAATAATCCAGAGCCCTGCCTTATCCAAACCTGTGAAGGTGAGAATAATAATAGTAATAATCATTTGTATTCCATGTGGGCTCTTCCTCCAGATGATGTGGGCAC
CAGAATCAAGACTCTGATGGAGAGCCTGAGAGCCGAGTTCGGAGGGCCCCAGTTCGAGCCTCATATCACCGTCGTTGGTGCCCTCCGTCTCGCCCCCGACGATGCGCTCG
ACAAGTTCCGGTCCGCCTGCTCGGGGCTTAAGACTTTTCAAGCCACTGTCGATCGTGTCTCTATTGGAACCTTGTACTATCAGTGTGTCTTCCTCCTCATTCATCCCACC
ACACAGATGGTGGAGACTAGTACACATTGCTGTGGATTATTTGGTTACAATAACACTACTCCTTACATGCCGCATTTGAGCCTGCTGTATGCGGACTTATCGGAAGAGAA
AAAGAAGAAGGCAGAAGAAATAGCGGACAAGCTGAACGAAGGCATTCACGGCCTGAGCTTCCCGGTGACTCGACTTGCACTGTACAAAACAGACATTGAGGATTTAACTC
TTAAGTCATGGGAGAAAATTGCAGAGCATGATCTTCCTTCAAATTAG

mRNA sequence

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Protein sequence

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MANNPEPCLIQTCEGENNNSNNHLYSMWALPPDDVGTRIKTLMESLRAEFGGPQFEPHITVVGALRLAPDDALDKFRSACSGLKTFQATVDRVSIGTLYYQCVFLLIHPT
TQMVETSTHCCGLFGYNNTTPYMPHLSLLYADLSEEKKKKAEEIADKLNEGIHGLSFPVTRLALYKTDIEDLTLKSWEKIAEHDLPSN

Sed0025293 (gene) of Chayote v1 genome