CuGenDBv2

Gene ID	Sed0025311
Organism	Sechium edule (Chayote v1)
Description	arabinogalactan peptide 13-like
Genome location	LG08:9447968..9448515
RNA-Seq Expression	Sed0025311
Synteny	Sed0025311
Gene Ontology terms	GO:0031225 - anchored component of membrane (cellular component)
InterPro domains	IPR039281 - Arabinogalactan protein 3/12/13/14/21

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7022018.1 Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-09

73.77

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Query:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFFL
        M AMKF+AL+V MVV VMA SSSIVAA   E PAP P SDA  SLPTLMASLAPL L FFL
Subjt:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFFL

KAG7023913.1 Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.3e-12

78.69

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Query:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFFL
        MEAMKFQAL++ MVVG MALSS+IVAA   E PAP P SDAS SLPTLMASLAPLAL FFL
Subjt:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFFL

XP_011660059.1 arabinogalactan protein 13 [Cucumis sativus]

3.3e-04

55.93

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Query:  AMKFQALVVTMVVGVM-ALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFF
        A +FQ L+VTM+V V+ A+SSS       E PAP P SDAS S+PTLMAS  PL   FF
Subjt:  AMKFQALVVTMVVGVM-ALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFF

XP_022988237.1 arabinogalactan peptide 13-like [Cucurbita maxima]

2.8e-11

77.05

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Query:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFFL
        MEAMKFQAL++ MVVG MALSS+IVAA   E PAP P SDA  SLPTLMASLAPLAL FFL
Subjt:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFFL

XP_038879727.1 arabinogalactan protein 13-like [Benincasa hispida]

1.6e-06

67.74

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Query:  MEAMKFQAL-VVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFFL
        MEAMK QAL ++ MVV +MA SSS + A Q E PAP P SDA  SLPTLMASLAPL L FFL
Subjt:  MEAMKFQAL-VVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFFL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWU9 Uncharacterized protein

1.6e-04

55.93

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Query:  AMKFQALVVTMVVGVM-ALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFF
        A +FQ L+VTM+V V+ A+SSS       E PAP P SDAS S+PTLMAS  PL   FF
Subjt:  AMKFQALVVTMVVGVM-ALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFF

A0A6J1JCI6 arabinogalactan peptide 13-like

1.3e-11

77.05

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Query:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFFL
        MEAMKFQAL++ MVVG MALSS+IVAA   E PAP P SDA  SLPTLMASLAPLAL FFL
Subjt:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFFL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G13520.1 arabinogalactan protein 12

1.6e-04

45.76

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Query:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAF
        ME+MK + L+V ++V ++A S+    A Q E PAP P SDA+  +P L AS+A LA  F
Subjt:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAF

AT4G26320.1 arabinogalactan protein 13

7.8e-04

47.46

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Query:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAF
        MEAMK + L V ++V  MA  S++  A   E PAP P SDAS ++P   AS+A LA  F
Subjt:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAF

AT5G56540.1 arabinogalactan protein 14

7.8e-04

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Query:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFF
        MEAMK + L V ++V V+A S+        + PAP P SDAS  +PT  AS+A +A  FF
Subjt:  MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFF

Sequences

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CDS sequence

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ATGGAAGCAATGAAGTTTCAAGCTTTGGTGGTGACAATGGTGGTTGGAGTTATGGCATTGTCAAGCTCCATTGTTGCAGCTCATCAGCATGAGGGCCCTGCCCCAGGCCC
TCATTCTGATGCTTCATTTTCTCTCCCAACTTTGATGGCTTCTCTTGCTCCTCTTGCTCTTGCCTTTTTTCTCTAA

mRNA sequence

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CACCCTCTATTTCTCTCAATCAATCCTGAGTTTGAAGAAACCAAAAGAAACCCATTTGAAAGCTTAGAAATTTGAGCATAAAAATCAAAGCTTTAAGGTTTATTTAGAAA
TGGAAGCAATGAAGTTTCAAGCTTTGGTGGTGACAATGGTGGTTGGAGTTATGGCATTGTCAAGCTCCATTGTTGCAGCTCATCAGCATGAGGGCCCTGCCCCAGGCCCT
CATTCTGATGCTTCATTTTCTCTCCCAACTTTGATGGCTTCTCTTGCTCCTCTTGCTCTTGCCTTTTTTCTCTAAATTTCATCTTTTTTTCTTCTTTTTTTATATATAAT
TTCAGTCAACATTTATTGTAAGTTTTAATGGATACATATTATGCATATGTGTGTTCTAAATCCATCTTGTTCATTTTCTCATTAGAAACTATGCAATTTCTATGAAGAAA
TGGATTGGAAAGATGAGTTGGTTGTTAATTGTTTGGTTGTTATTTGGATTCTTAATTTAATGTATTTTTTCAATATTTAATGTTATGGCTTTTCTTTCCTCTTATTAA

Protein sequence

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MEAMKFQALVVTMVVGVMALSSSIVAAHQHEGPAPGPHSDASFSLPTLMASLAPLALAFFL

Sed0025311 (gene) of Chayote v1 genome