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Sed0025345 (gene) of Chayote v1 genome

Gene IDSed0025345
OrganismSechium edule (Chayote v1)
Descriptionextensin-like
Genome locationLG13:19976949..19977478
RNA-Seq ExpressionSed0025345
SyntenySed0025345
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031836.1 Protein PSY3 [Cucumis melo var. makuwa]3.3e-0865.57Show/hide
Query:  KAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPPPPPPPSRQ
        KA L LFLLLSF LV SAR+ PH  SE Q  A +INDY DPGANPRHDP      PPPS+Q
Subjt:  KAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPPPPPPPSRQ

KAA0031838.1 hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa]9.6e-0868.63Show/hide
Query:  LCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPPP
        + LFLLLSF LV SAR+ PH  SE Q  A +INDY DPGANPRHDP  PPP
Subjt:  LCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPPP

KGN65816.1 hypothetical protein Csa_023196 [Cucumis sativus]1.2e-0764.15Show/hide
Query:  KAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPP
        KA L LFLLLSF L  SAR+ PH  SE Q    ++NDY+DPGANPRHDP  PP
Subjt:  KAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPP

XP_023525722.1 extensin-like isoform X1 [Cucurbita pepo subsp. pepo]6.2e-0756.72Show/hide
Query:  MDLKAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPP--PPPPPSRQA
        M+ K  LCL  LLSF LV+SAR+   +VS KQAT +VINDY+DPG NP   P  P   PPPPP  +A
Subjt:  MDLKAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPP--PPPPPSRQA

XP_038895781.1 circumsporozoite protein-like [Benincasa hispida]3.9e-0967.92Show/hide
Query:  KAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPP
        KA L  FLLLSF L+  AR+TPH  SE Q   + INDYADPGANPRHDP+QPP
Subjt:  KAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPP

TrEMBL top hitse value%identityAlignment
A0A0A0LV67 Uncharacterized protein7.9e-0866.67Show/hide
Query:  KAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPPP
        KA L L LLLSF LV SAR+ PH  SE Q  A +INDY DPGANPRH+P  PPP
Subjt:  KAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPPP

A0A0A0M0T8 Uncharacterized protein6.0e-0864.15Show/hide
Query:  KAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPP
        KA L LFLLLSF L  SAR+ PH  SE Q    ++NDY+DPGANPRHDP  PP
Subjt:  KAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPP

A0A5A7SMH7 Uncharacterized protein4.6e-0868.63Show/hide
Query:  LCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPPP
        + LFLLLSF LV SAR+ PH  SE Q  A +INDY DPGANPRHDP  PPP
Subjt:  LCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPPP

A0A5A7SPC6 Protein PSY31.6e-0865.57Show/hide
Query:  KAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPPPPPPPSRQ
        KA L LFLLLSF LV SAR+ PH  SE Q  A +INDY DPGANPRHDP      PPPS+Q
Subjt:  KAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPPPPPPPSRQ

A0A6J1KAU3 extensin-like3.0e-0756.72Show/hide
Query:  MDLKAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPP--PPPPPSRQA
        M+ KA LCL  LLSF LV SA++   +VS KQAT +VINDY+DPG NP   P  P   PPPPP  +A
Subjt:  MDLKAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPP--PPPPPSRQA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G29995.1 unknown protein1.4e-0446.15Show/hide
Query:  LCLFLLLSFTLVDSARVT------PHTVSEKQATAVVINDYADPGANPRHDP
        LCLFL  +F L+ SAR++        TV  +++  V  NDY+DP AN RHDP
Subjt:  LCLFLLLSFTLVDSARVT------PHTVSEKQATAVVINDYADPGANPRHDP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTTAAAGCTCCTCTTTGCCTCTTCCTCTTGCTCTCCTTCACTCTCGTCGACTCGGCTCGGGTCACGCCCCATACTGTTTCAGAAAAGCAAGCGACCGCGGTTGT
AATAAACGACTATGCTGATCCGGGGGCTAATCCGAGGCACGATCCAAGCCAACCACCACCACCACCACCACCGTCCCGACAGGCCATTGGCATGGAGCCCTAG
mRNA sequenceShow/hide mRNA sequence
AAGAAACACAAAATCAACATCATGGATCTTAAAGCTCCTCTTTGCCTCTTCCTCTTGCTCTCCTTCACTCTCGTCGACTCGGCTCGGGTCACGCCCCATACTGTTTCAGA
AAAGCAAGCGACCGCGGTTGTAATAAACGACTATGCTGATCCGGGGGCTAATCCGAGGCACGATCCAAGCCAACCACCACCACCACCACCACCGTCCCGACAGGCCATTG
GCATGGAGCCCTAGACAGATCTTGTTTTCCAGAGGTTGGCCAGCAGCATCAGCAAGAGAAATAATAGTACTAAAAATATTGTATTGATGCAAATAATTTTGTTTCTGATA
AGAAATGGAATAATAAATTCTCAAATGGTGTAATGAACACTGAAAATATAGTATGGTAATGTACACAAATATCCCTGG
Protein sequenceShow/hide protein sequence
MDLKAPLCLFLLLSFTLVDSARVTPHTVSEKQATAVVINDYADPGANPRHDPSQPPPPPPPSRQAIGMEP