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Sed0025397 (gene) of Chayote v1 genome

Gene IDSed0025397
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG06:39815095..39816446
RNA-Seq ExpressionSed0025397
SyntenySed0025397
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
A0A2N9FMB2 CCHC-type domain-containing protein5.6e-0647.22Show/hide
Query:  DADLISNIPLSEVDVPDEVIWSANENCVFSVKSVYHVGSMLGNSEEDSSSDTSITSSIWKSFSNMELSPKVK
        D DLI  IPLS    PD +IW+  +  VFSVKS YH+   L NS+E ++S  S   SIW S   +++ PKVK
Subjt:  DADLISNIPLSEVDVPDEVIWSANENCVFSVKSVYHVGSMLGNSEEDSSSDTSITSSIWKSFSNMELSPKVK

A0A2N9H3I8 Uncharacterized protein2.8e-0545.83Show/hide
Query:  DADLISNIPLSEVDVPDEVIWSANENCVFSVKSVYHVGSMLGNSEEDSSSDTSITSSIWKSFSNMELSPKVK
        D DLI  IPLS    PD +IW   +  VFSVKS YH+   L NS+E ++S  +   SIW S   +++ PKVK
Subjt:  DADLISNIPLSEVDVPDEVIWSANENCVFSVKSVYHVGSMLGNSEEDSSSDTSITSSIWKSFSNMELSPKVK

A0A2N9H410 CCHC-type domain-containing protein5.6e-0647.22Show/hide
Query:  DADLISNIPLSEVDVPDEVIWSANENCVFSVKSVYHVGSMLGNSEEDSSSDTSITSSIWKSFSNMELSPKVK
        D DLI  IPLS    PD +IW+  +  VFSVKS YH+   L NS+E ++S  S   SIW S   +++ PKVK
Subjt:  DADLISNIPLSEVDVPDEVIWSANENCVFSVKSVYHVGSMLGNSEEDSSSDTSITSSIWKSFSNMELSPKVK

A0A2N9I509 Uncharacterized protein4.7e-0543.84Show/hide
Query:  DADLISNIPLSEVDVPDEVIWSANENCVFSVKSVYHVGSMLGNSEEDS-SSDTSITSSIWKSFSNMELSPKVK
        DA++I  IPLS     D +IW+A++N VFSV+S YH+     N +E S SS  S+ S  W S  ++++ PKVK
Subjt:  DADLISNIPLSEVDVPDEVIWSANENCVFSVKSVYHVGSMLGNSEEDS-SSDTSITSSIWKSFSNMELSPKVK

A0A803P3X4 Uncharacterized protein3.0e-0432.41Show/hide
Query:  DADLISNIPLSEVDVPDEVIWSANENCVFSVKSVYHVGSMLGNSEEDSSSDTSITSSIWKSFSNMELSPKVKE------DGGLISNIPLSEVDVPDEVIW
        DADLI  +P SE D+ D+V+W  +++  +SV+S Y + + L     D  SDT +T   W+    +++ PKVK          L +N  L+  ++P E   
Subjt:  DADLISNIPLSEVDVPDEVIWSANENCVFSVKSVYHVGSMLGNSEEDSSSDTSITSSIWKSFSNMELSPKVKE------DGGLISNIPLSEVDVPDEVIW

Query:  SANENGVF
        +   NGV+
Subjt:  SANENGVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGCGAATCACAATTGGAAGACGCAGACCTCATTTCAAATATTCCTCTAAGTGAGGTCGATGTGCCAGATGAAGTGATTTGGAGTGCTAATGAGAATTGTGTTTT
TTCAGTTAAAAGTGTCTATCATGTTGGGTCTATGTTGGGTAATTCCGAGGAGGATTCCTCTTCGGATACAAGTATTACTTCGAGTATCTGGAAAAGCTTTTCGAATATGG
AGCTTTCTCCCAAAGTCAAAGAAGATGGAGGCCTCATTTCAAATATTCCTCTAAGTGAGGTCGATGTGCCAGATGAAGTGATTTGGAGTGCTAATGAGAATGGTGTTTTT
TCAGTTAAAGTGCCCATCATGTTGGGTCTATGTTGGGTAATTCCAAAGAGGATTCCTCTTCGGATACAAATATTACTACGAGTATCTGGAAAAGCTTTTGGAATGTGGAG
CTTTATCCCAAAGTCAAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATAGGCGAATCACAATTGGAAGACGCAGACCTCATTTCAAATATTCCTCTAAGTGAGGTCGATGTGCCAGATGAAGTGATTTGGAGTGCTAATGAGAATTGTGTTTT
TTCAGTTAAAAGTGTCTATCATGTTGGGTCTATGTTGGGTAATTCCGAGGAGGATTCCTCTTCGGATACAAGTATTACTTCGAGTATCTGGAAAAGCTTTTCGAATATGG
AGCTTTCTCCCAAAGTCAAAGAAGATGGAGGCCTCATTTCAAATATTCCTCTAAGTGAGGTCGATGTGCCAGATGAAGTGATTTGGAGTGCTAATGAGAATGGTGTTTTT
TCAGTTAAAGTGCCCATCATGTTGGGTCTATGTTGGGTAATTCCAAAGAGGATTCCTCTTCGGATACAAATATTACTACGAGTATCTGGAAAAGCTTTTGGAATGTGGAG
CTTTATCCCAAAGTCAAAGTAG
Protein sequenceShow/hide protein sequence
MIGESQLEDADLISNIPLSEVDVPDEVIWSANENCVFSVKSVYHVGSMLGNSEEDSSSDTSITSSIWKSFSNMELSPKVKEDGGLISNIPLSEVDVPDEVIWSANENGVF
SVKVPIMLGLCWVIPKRIPLRIQILLRVSGKAFGMWSFIPKSK