CuGenDBv2

Gene ID	Sed0025405
Organism	Sechium edule (Chayote v1)
Description	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Genome location	LG12:11049792..11058071
RNA-Seq Expression	Sed0025405
Synteny	Sed0025405
Gene Ontology terms	GO:0006450 - regulation of translational fidelity (biological process) GO:0032543 - mitochondrial translation (biological process) GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (molecular function)
InterPro domains	IPR003837 - Glu-tRNAGln amidotransferase C subunit IPR036113 - Glu-tRNAGln amidotransferase superfamily, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008466091.1 PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo]

1.6e-48

74.48

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Query:  MGSRALHVLKGALSVSSPKHQIFISTNLHTPPT-------------IQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS
        MGS+AL +LKGA S  S K QIFIST  H+ P              + ASLQPPDVPRLAQTARISLTP++V++FAPKI QVV WFGQLQTVDLQSIEPS
Subjt:  MGSRALHVLKGALSVSSPKHQIFISTNLHTPPT-------------IQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQRNDV ETFENREAMI AVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

XP_022143239.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia]

5.5e-49

74.83

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Query:  MGSRALHVLKGALSVSSPKHQIF-----------ISTN----LHTPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIE
        MGS+AL +LKGALS+ S + QIF           IS+N      T P I+ASLQPPDVPRLA+TARISLTP+EV++FAPKIRQVV WFGQLQTVDLQSIE
Subjt:  MGSRALHVLKGALSVSSPKHQIF-----------ISTN----LHTPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        PSIRADTEGGNQRND+ ETFENREAMI AVPVFDEPYIRVPKVLNKE
Subjt:  PSIRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

XP_022941306.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata]

3.6e-48

74.48

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Query:  MGSRALHVLKGALSVSSPKHQIFISTNLH-------------TPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS
        MGS AL +LKGA S+ S   QIFIST+L+             T P I+ASLQPPDVPRLA+TARISL P+EV++FAPKIRQVV WFGQLQ VDLQSIEPS
Subjt:  MGSRALHVLKGALSVSSPKHQIFISTNLH-------------TPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQR+DV ETFENREAMI AVPVFDEPYIRVPKVLNKE
Subjt:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

XP_023521629.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]

8.0e-48

74.48

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Query:  MGSRALHVLKGALSVSSPKHQIFISTNLH-------------TPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS
        M S AL +LKGA S+ S   QIFIST+L+             T P I+ASLQPPDVPRLA+TARISL PSEV++FAPKIRQVV WFGQLQ VDLQSIEPS
Subjt:  MGSRALHVLKGALSVSSPKHQIFISTNLH-------------TPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQR+DV ETFENREAMI AVPVFDEPYIRVPKVLNKE
Subjt:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

XP_038897282.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida]

2.1e-48

73.79

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Query:  MGSRALHVLKGALSVSSPKHQIFISTNLHTPPT-------------IQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS
        MGS+AL +LKGA S  S K +IFIST LH+ P              I ASLQPPDVPRLA+TARISLTP++V++FAPKIRQVV WFGQLQTVDLQSIEP+
Subjt:  MGSRALHVLKGALSVSSPKHQIFISTNLHTPPT-------------IQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQRND+ ETFENREAMI AVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJU5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

5.1e-48

73.1

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Query:  MGSRALHVLKGALSVSSPKHQIFISTNLHTPPT-------------IQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS
        MGS+AL +LKGA S  S K QIFIST  H+ P              I ASLQPPDVPRLAQTARISLTP++ ++FAPKI QVV WFGQLQTVDLQSIEPS
Subjt:  MGSRALHVLKGALSVSSPKHQIFISTNLHTPPT-------------IQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        IRADTEGG+QRND+ ETFENREAMI AVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

A0A1S3CQE8 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

7.8e-49

74.48

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Query:  MGSRALHVLKGALSVSSPKHQIFISTNLHTPPT-------------IQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS
        MGS+AL +LKGA S  S K QIFIST  H+ P              + ASLQPPDVPRLAQTARISLTP++V++FAPKI QVV WFGQLQTVDLQSIEPS
Subjt:  MGSRALHVLKGALSVSSPKHQIFISTNLHTPPT-------------IQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQRNDV ETFENREAMI AVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

A0A5A7T6R5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

7.8e-49

74.48

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Query:  MGSRALHVLKGALSVSSPKHQIFISTNLHTPPT-------------IQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS
        MGS+AL +LKGA S  S K QIFIST  H+ P              + ASLQPPDVPRLAQTARISLTP++V++FAPKI QVV WFGQLQTVDLQSIEPS
Subjt:  MGSRALHVLKGALSVSSPKHQIFISTNLHTPPT-------------IQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQRNDV ETFENREAMI AVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

A0A6J1CQ90 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.7e-49

74.83

Show/hide

Query:  MGSRALHVLKGALSVSSPKHQIF-----------ISTN----LHTPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIE
        MGS+AL +LKGALS+ S + QIF           IS+N      T P I+ASLQPPDVPRLA+TARISLTP+EV++FAPKIRQVV WFGQLQTVDLQSIE
Subjt:  MGSRALHVLKGALSVSSPKHQIF-----------ISTN----LHTPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        PSIRADTEGGNQRND+ ETFENREAMI AVPVFDEPYIRVPKVLNKE
Subjt:  PSIRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

A0A6J1FM33 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.7e-48

74.48

Show/hide

Query:  MGSRALHVLKGALSVSSPKHQIFISTNLH-------------TPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS
        MGS AL +LKGA S+ S   QIFIST+L+             T P I+ASLQPPDVPRLA+TARISL P+EV++FAPKIRQVV WFGQLQ VDLQSIEPS
Subjt:  MGSRALHVLKGALSVSSPKHQIFISTNLH-------------TPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQR+DV ETFENREAMI AVPVFDEPYIRVPKVLNKE
Subjt:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

SwissProt top hits

e value

%identity

Alignment

A2XK57 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

3.2e-31

65.98

Show/hide

Query:  SLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        +L+PPD+PRLA  ARISL+P E ++FAPKIRQVV WFGQLQ VDL+S+EPS+RA T  GN  R D  ETF NR+A+I++VP +D+PYI+VP+VLNKE
Subjt:  SLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

B9INH0 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.3e-34

56.55

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Query:  MGSRALHVLKGALSVSSPKHQIFISTN---LHTPPTIQ----------ASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS
        MGSRA+ +LKG    S PKH I    N   +   P+I+          +SL+PPDV RLA+TARISLTP +V++F PKIRQV+ W   L +VDL S+EPS
Subjt:  MGSRALHVLKGALSVSSPKHQIFISTN---LHTPPTIQ----------ASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        IRADTEG N R+D  ETFENREA+I AVP +++PY++VPKVLNKE
Subjt:  IRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

B9RRX2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

7.3e-36

55.94

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Query:  MGSRALHVLKGALSVS-----------SPKHQIFISTNLHTPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPSIR
        MGSRAL +LK AL +            +P  ++          T  +SLQPPDV RLA+TARISL  +EV++FAPKIRQV+ WFGQLQ VDL S+EP+IR
Subjt:  MGSRALHVLKGALSVS-----------SPKHQIFISTNLHTPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPSIR

Query:  ADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        AD+EG N R+DV ETF  REA+I AVP +++PY++VPKVLNKE
Subjt:  ADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

D7STK2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.3e-37

60.58

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Query:  MGSRALHVLKGA-----LSVSSPKHQIFISTNLHTPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGG
        MGSRAL +LK       L  S       +  N     + +++L PPD+PRLA+TARISLTP EV++FAPKIRQV+ WFGQLQ VDLQSIEPSIRADTEG 
Subjt:  MGSRALHVLKGA-----LSVSSPKHQIFISTNLHTPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGG

Query:  NQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        N R+D  ETFENREA+I A+P ++EPY++VPKVLNK+
Subjt:  NQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

Q7XZZ1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

3.2e-31

65.98

Show/hide

Query:  SLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        +L+PPD+PRLA  ARISL+P E ++FAPKIRQVV WFGQLQ VDL+S+EPS+RA T  GN  R D  ETF NR+A+I++VP +D+PYI+VP+VLNKE
Subjt:  SLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

Arabidopsis top hits

e value

%identity

Alignment

AT4G32915.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

4.7e-30

Show/hide

Query:  LQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE
        LQPPDV RLAQTARISLTP+E+++   KIR+V+ WFGQLQ VD+ S+EP+IRA+ +GGN R D  ETF+NR+++  ++P F++ Y++VPK+LNKE
Subjt:  LQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQRNDVCETFENREAMIDAVPVFDEPYIRVPKVLNKE

Sequences

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CDS sequence

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ATGGGAAGTAGAGCTCTTCATGTGCTGAAAGGAGCGTTATCAGTTTCATCGCCAAAGCACCAAATCTTCATCTCTACAAATCTGCATACTCCTCCAACGATTCAGGCCTC
TCTTCAACCTCCCGATGTGCCTCGTTTAGCTCAAACTGCTCGAATTTCCCTCACTCCATCTGAGGTTCAACAATTTGCTCCTAAAATTCGACAAGTTGTTCATTGGTTTG
GGCAACTCCAGACAGTTGATCTTCAAAGTATTGAGCCTTCCATTAGAGCAGATACTGAAGGGGGCAATCAGCGGAATGATGTTTGTGAAACATTTGAAAATAGAGAGGCC
ATGATTGACGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAG

mRNA sequence

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Protein sequence

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MGSRALHVLKGALSVSSPKHQIFISTNLHTPPTIQASLQPPDVPRLAQTARISLTPSEVQQFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQRNDVCETFENREA
MIDAVPVFDEPYIRVPKVLNKE

Sed0025405 (gene) of Chayote v1 genome