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Sed0025419 (gene) of Chayote v1 genome

Gene IDSed0025419
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S16, chloroplastic
Genome locationContig00297:188978..190126
RNA-Seq ExpressionSed0025419
SyntenySed0025419
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR020592 - Ribosomal protein S16, conserved site
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHF71935.1 30S ribosomal protein S16 [Paeonia sp. Sd0052]1.1e-2064.84Show/hide
Query:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK
        MVKLRLKRCGR                        GFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVL NF LI KRN+IN++
Subjt:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK

YP_009114431.1 ribosomal protein S16 [Paeonia obovata]1.9e-2063.44Show/hide
Query:  MVKLRLKRCGRN-------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK
        MVKLRLKRCGR                          GFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVL NF LI KRN+IN++
Subjt:  MVKLRLKRCGRN-------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK

YP_009414626.1 30S ribosomal protein S16 [Paeonia ludlowii]1.1e-2064.84Show/hide
Query:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK
        MVKLRLKRCGR                        GFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVL NF LI KRN+IN++
Subjt:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK

YP_009872934.1 ribosomal protein S16 [Paeonia obovata subsp. willmottiae]1.5e-2064.13Show/hide
Query:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK
        MVKLRLKRCGR                         GFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVL NF LI KRN+IN++
Subjt:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK

YP_010126041.1 ribosomal protein S16 [Paeonia sp. CV Hwang-Moran]1.5e-2064.13Show/hide
Query:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK
        MVKLRLKRCGR                         GFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVL NF LI KRN+IN++
Subjt:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK

TrEMBL top hitse value%identityAlignment
A0A222AGD9 30S ribosomal protein S16, chloroplastic5.4e-2164.84Show/hide
Query:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK
        MVKLRLKRCGR                        GFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVL NF LI KRN+IN++
Subjt:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK

A0A6M4B4J0 30S ribosomal protein S16, chloroplastic5.4e-2164.84Show/hide
Query:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK
        MVKLRLKRCGR                        GFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVL NF LI KRN+IN++
Subjt:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK

A0A6M4B500 30S ribosomal protein S16, chloroplastic5.4e-2164.84Show/hide
Query:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK
        MVKLRLKRCGR                        GFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVL NF LI KRN+IN++
Subjt:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK

A0A6M8B0J8 30S ribosomal protein S16, chloroplastic5.4e-2164.84Show/hide
Query:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK
        MVKLRLKRCGR                        GFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVL NF LI KRN+IN++
Subjt:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK

A0A7D7FB77 30S ribosomal protein S16, chloroplastic5.4e-2164.84Show/hide
Query:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK
        MVKLRLKRCGR                        GFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVL NF LI KRN+IN++
Subjt:  MVKLRLKRCGRN-----------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKK

SwissProt top hitse value%identityAlignment
A0ZZ17 30S ribosomal protein S16, chloroplastic1.1e-1859.76Show/hide
Query:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTL
        MVKLRLKRCGR                         GFYDPI N+TYLNVPAI+YFLEKGAQPT TVHDILKKAGV    TL
Subjt:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTL

Q09X35 30S ribosomal protein S16, chloroplastic4.2e-1858.54Show/hide
Query:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTL
        MVKLRLKRCGR                         GFYDPIKN+TYLNVP I+YFLEKGAQPTGTVHDI KKAGV     L
Subjt:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTL

Q2L8Y7 30S ribosomal protein S16, chloroplastic1.1e-1859.76Show/hide
Query:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTL
        MVKLRLKRCGR                         GFYDPI N+TYLNVPAI+YFLEKGAQPT TVHDILKKAGV    TL
Subjt:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTL

Q2QDA6 30S ribosomal protein S16, chloroplastic4.9e-1960.24Show/hide
Query:  MVKLRLKRCGRN-------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTL
        MVKLRLKRCGR                          GFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGV     L
Subjt:  MVKLRLKRCGRN-------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTL

Q9MTQ0 30S ribosomal protein S16, chloroplastic7.1e-1856.1Show/hide
Query:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTL
        MVKLRLKRCG+                         GFYDPI NKTYL++P I+YFLEKGAQPTGTV+DILKKAGV   F+L
Subjt:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTL

Arabidopsis top hitse value%identityAlignment
ATCG00050.1 ribosomal protein S166.4e-1451.32Show/hide
Query:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGV
        MVKLRLKRCGR                         GFYDPI N+T+LN+ AI+ FL+KGAQPT T HDI KKAG+
Subjt:  MVKLRLKRCGRN------------------------GFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAATGGGTTTTATGATCCGATAAAGAATAAAACCTATTTAAATGTTCCTGCGATTATATATTTCCTTGAAAAGGGTGC
TCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGGGTTTTACGGAACTTCACCTTAATCAATAAACGAAATTCCATTAATAAAAAAAAAAAAAAAAAAAAAG
AAGTGTGGATAACTTGTATATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAATGGGTTTTATGATCCGATAAAGAATAAAACCTATTTAAATGTTCCTGCGATTATATATTTCCTTGAAAAGGGTGC
TCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGGGTTTTACGGAACTTCACCTTAATCAATAAACGAAATTCCATTAATAAAAAAAAAAAAAAAAAAAAAG
AAGTGTGGATAACTTGTATATAG
Protein sequenceShow/hide protein sequence
MVKLRLKRCGRNGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVLRNFTLINKRNSINKKKKKKKEVWITCI