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Sed0025470 (gene) of Chayote v1 genome

Gene IDSed0025470
OrganismSechium edule (Chayote v1)
Descriptionserine/arginine-rich splicing factor RS31-like isoform X2
Genome locationLG07:37482966..37483589
RNA-Seq ExpressionSed0025470
SyntenySed0025470
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR029537 - Arginine/serine-rich-splicing factor RSP31/31A
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011650665.1 serine/arginine-rich splicing factor RS31 isoform X3 [Cucumis sativus]4.4e-3786.96Show/hide
Query:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        MQRLY YMCISP IFAGFAFVYFEDERDAEDAIR LDN PFGYDRRRL VEW+RGERG HRDGSKSM N+RPTKTLFVINFD   TRVRDIE
Subjt:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

XP_022147392.1 serine/arginine-rich splicing factor RS31-like isoform X2 [Momordica charantia]1.1e-3584.78Show/hide
Query:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        MQRLY YMCISP IFAGFAFVYFEDERDAEDAIR LDN  FGYDRRRL VEW+RGERG HRDGSKS+ N+RPTKTLFVINFD   TRVRDIE
Subjt:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

XP_022924569.1 serine/arginine-rich splicing factor RS31-like isoform X2 [Cucurbita moschata]1.4e-3583.7Show/hide
Query:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        MQRLY YMCISP IFAGFAFVYFE+ERDAED+IR+LDN PFGYDRRRL VEW+RGERG  RDGSKSM N+RPTKTLFVINFD   TRVRDIE
Subjt:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

XP_023527372.1 serine/arginine-rich splicing factor RS31-like isoform X2 [Cucurbita pepo subsp. pepo]5.4e-3582.61Show/hide
Query:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        MQRLY YMCISP IFAGFAFVYFE+ERDAED+IR+LDN PFGYDRRRL VEW+RGERG  RDGSKSM N+RPTKTLFVINFD   TRV DIE
Subjt:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

XP_038893575.1 serine/arginine-rich splicing factor RS31 isoform X3 [Benincasa hispida]4.4e-3786.96Show/hide
Query:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        MQRLY YMCISP IFAGFAFVYFEDERDAEDAIR LDN PFGYDRRRL VEW+RGERG HRDGSKSM N+RPTKTLFVINFD   TRVRDIE
Subjt:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

TrEMBL top hitse value%identityAlignment
A0A0A0K5S0 Uncharacterized protein2.1e-3786.96Show/hide
Query:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        MQRLY YMCISP IFAGFAFVYFEDERDAEDAIR LDN PFGYDRRRL VEW+RGERG HRDGSKSM N+RPTKTLFVINFD   TRVRDIE
Subjt:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

A0A1S4DTR0 serine/arginine-rich splicing factor RS31-like isoform X22.1e-3786.96Show/hide
Query:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        MQRLY YMCISP IFAGFAFVYFEDERDAEDAIR LDN PFGYDRRRL VEW+RGERG HRDGSKSM N+RPTKTLFVINFD   TRVRDIE
Subjt:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

A0A6J1D289 serine/arginine-rich splicing factor RS31-like isoform X25.3e-3684.78Show/hide
Query:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        MQRLY YMCISP IFAGFAFVYFEDERDAEDAIR LDN  FGYDRRRL VEW+RGERG HRDGSKS+ N+RPTKTLFVINFD   TRVRDIE
Subjt:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

A0A6J1E9I9 serine/arginine-rich splicing factor RS31-like isoform X26.9e-3683.7Show/hide
Query:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        MQRLY YMCISP IFAGFAFVYFE+ERDAED+IR+LDN PFGYDRRRL VEW+RGERG  RDGSKSM N+RPTKTLFVINFD   TRVRDIE
Subjt:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

A0A6J1IWA9 serine/arginine-rich splicing factor RS31A-like isoform X25.8e-3582.61Show/hide
Query:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        MQRLY YMCIS  IFAGFAFVYFE+ERDAED+IR+LDN PFGYDRRRL VEW+RGERG  RDGSKSM N+RPTKTLFVINFD   TRVRDIE
Subjt:  MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

SwissProt top hitse value%identityAlignment
P92964 Serine/arginine-rich splicing factor RS319.9e-2467.53Show/hide
Query:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        +G+AFVYFEDERDAEDAIR LDN PFGY++RRL VEW++GERG  R  +K+  N +PTKTLFVINFD   T+  DIE
Subjt:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

P92965 Serine/arginine-rich splicing factor RS401.3e-1860.49Show/hide
Query:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHR----DGSKSMENRRPTKTLFVINFDANCTRVRDIE
        AGFAFVY EDERDAEDAIR LD   FG   RRL VEW++ ERG  +       +S  + RP+KTLFVINFDA+ TR RD+E
Subjt:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHR----DGSKSMENRRPTKTLFVINFDANCTRVRDIE

P92966 Serine/arginine-rich splicing factor RS416.2e-1861.25Show/hide
Query:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGER-GCHRDGS--KSMENRRPTKTLFVINFDANCTRVRDIE
        AGFAFVY EDERDAEDAIR LD   +G   RRL VEW++ +R G  R G   +S    RP+KTLFVINFDA  TR RD+E
Subjt:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGER-GCHRDGS--KSMENRRPTKTLFVINFDANCTRVRDIE

Q10021 Probable splicing factor, arginine/serine-rich 51.6e-0552.73Show/hide
Query:  GFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGE-RGCHRDGSKSMENR
        GFAFV FED RDAEDA  +LD         RL VE +RG+ RG  R GS+S   R
Subjt:  GFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGE-RGCHRDGSKSMENR

Q9ZPX8 Serine/arginine-rich splicing factor RS31A3.2e-2267.5Show/hide
Query:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSR---GERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        +G+AFVYFEDERDAEDAIR  DN  FGY RR+L VEW++   GERG  RDG K++ N+RPTKTLFVINFD   TR RD+E
Subjt:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSR---GERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

Arabidopsis top hitse value%identityAlignment
AT2G46610.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.3e-2367.5Show/hide
Query:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSR---GERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        +G+AFVYFEDERDAEDAIR  DN  FGY RR+L VEW++   GERG  RDG K++ N+RPTKTLFVINFD   TR RD+E
Subjt:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSR---GERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

AT2G46610.2 RNA-binding (RRM/RBD/RNP motifs) family protein4.6e-2465.91Show/hide
Query:  MCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSR---GERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        M  S  I AG+AFVYFEDERDAEDAIR  DN  FGY RR+L VEW++   GERG  RDG K++ N+RPTKTLFVINFD   TR RD+E
Subjt:  MCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSR---GERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.1e-2567.53Show/hide
Query:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE
        +G+AFVYFEDERDAEDAIR LDN PFGY++RRL VEW++GERG  R  +K+  N +PTKTLFVINFD   T+  DIE
Subjt:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE

AT4G25500.1 arginine/serine-rich splicing factor 358.9e-2060.49Show/hide
Query:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHR----DGSKSMENRRPTKTLFVINFDANCTRVRDIE
        AGFAFVY EDERDAEDAIR LD   FG   RRL VEW++ ERG  +       +S  + RP+KTLFVINFDA+ TR RD+E
Subjt:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHR----DGSKSMENRRPTKTLFVINFDANCTRVRDIE

AT4G25500.4 arginine/serine-rich splicing factor 358.9e-2060.49Show/hide
Query:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHR----DGSKSMENRRPTKTLFVINFDANCTRVRDIE
        AGFAFVY EDERDAEDAIR LD   FG   RRL VEW++ ERG  +       +S  + RP+KTLFVINFDA+ TR RD+E
Subjt:  AGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHR----DGSKSMENRRPTKTLFVINFDANCTRVRDIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACGTCTCTACTGCTATATGTGCATCAGTCCTTCCATATTTGCAGGTTTTGCTTTTGTTTACTTTGAAGATGAGAGAGATGCTGAAGATGCCATTCGTAACCTTGA
TAACGCACCATTTGGTTATGATAGACGCAGATTGTTTGTGGAATGGTCTAGGGGTGAGCGAGGTTGTCATCGTGATGGATCCAAGTCGATGGAGAATCGGAGGCCAACCA
AAACCTTGTTTGTGATCAATTTTGACGCTAATTGTACTAGAGTTCGTGACATTGAATGA
mRNA sequenceShow/hide mRNA sequence
GGCGAAGCATGGTTGAAATTTTGGTCTAAATCCTTTAGTATGCAACCATCTTAGATCATCATGCAACGTCTCTACTGCTATATGTGCATCAGTCCTTCCATATTTGCAGG
TTTTGCTTTTGTTTACTTTGAAGATGAGAGAGATGCTGAAGATGCCATTCGTAACCTTGATAACGCACCATTTGGTTATGATAGACGCAGATTGTTTGTGGAATGGTCTA
GGGGTGAGCGAGGTTGTCATCGTGATGGATCCAAGTCGATGGAGAATCGGAGGCCAACCAAAACCTTGTTTGTGATCAATTTTGACGCTAATTGTACTAGAGTTCGTGAC
ATTGAATGAC
Protein sequenceShow/hide protein sequence
MQRLYCYMCISPSIFAGFAFVYFEDERDAEDAIRNLDNAPFGYDRRRLFVEWSRGERGCHRDGSKSMENRRPTKTLFVINFDANCTRVRDIE