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Sed0025485 (gene) of Chayote v1 genome

Gene IDSed0025485
OrganismSechium edule (Chayote v1)
Descriptionglycine-rich RNA-binding protein GRP1A-like
Genome locationLG07:37620060..37626334
RNA-Seq ExpressionSed0025485
SyntenySed0025485
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601227.1 hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia]2.9e-2758.21Show/hide
Query:  IFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAIIPIYAAGSAQARR
        +F LFC ++   SS+L QQI  TES+Y Q+TN EKHGK DGVT++I   YSA A+ VS    H  + GG + GGG RP A GGG A+IP+YAAGSAQA  
Subjt:  IFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAIIPIYAAGSAQARR

Query:  QQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF
        +QGR RNAG  +ENNMGLLVA VL  I H++ VF
Subjt:  QQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF

XP_011655831.2 glycine-rich protein DOT1 [Cucumis sativus]5.9e-2854.94Show/hide
Query:  MGRTRRSQIMGFIFFLFCFSMATTSSSLQQ---ISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSN---RFSHSGSGGGRDGG----------
        MGR R  ++   IF LFC ++A +S++LQQ    + TES+YQQ+T  +KHGK  GVT+QI++RYS+SA+ VSN   R S SGSG G  GG          
Subjt:  MGRTRRSQIMGFIFFLFCFSMATTSSSLQQ---ISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSN---RFSHSGSGGGRDGG----------

Query:  --GGSRPHAGGGTAIIPIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF
          GGSRP  GGGTA+IP+YAAGSAQA  +QGR  NAG  +ENNMGLLVA VL  I H+ RVF
Subjt:  --GGSRPHAGGGTAIIPIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF

XP_022957462.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]2.0e-2856.85Show/hide
Query:  MGRTRRSQIMGFIFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAII
        MGR R   +M   F LFC ++   SS+L QQI  TES+Y Q+TN EKHGK DGVT++I   YSA A+ VS    H  + GG + GGG RP A GGG A+I
Subjt:  MGRTRRSQIMGFIFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAII

Query:  PIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF
        P+YAAGSAQA  +QGR RNAG  +ENNMGLLVA VL  I H++ VF
Subjt:  PIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF

XP_023517064.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]2.0e-2856.85Show/hide
Query:  MGRTRRSQIMGFIFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAII
        MGR R   +M   F LFC ++   SS+L QQI  TES+Y Q+TN EKHGK DGVT++I   YSA A+ VS    H  + GG + GGG RP A GGG A+I
Subjt:  MGRTRRSQIMGFIFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAII

Query:  PIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF
        P+YAAGSAQA  +QGR RNAG  +ENNMGLLVA VL  I H++ VF
Subjt:  PIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF

XP_038892711.1 uncharacterized protein LOC120081693 [Benincasa hispida]4.1e-2958.22Show/hide
Query:  MGRTRRSQIMGFIFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSH-SGSGGGRDGGGGSRPHAGGGTAII
        MGR RR ++   I  L C +MA +S++L QQI  TES+YQQ+T  EK  K DG+T+QI +RYSA+ + VSN     S   GG + GGGSRPH GGGTA+I
Subjt:  MGRTRRSQIMGFIFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSH-SGSGGGRDGGGGSRPHAGGGTAII

Query:  PIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF
        P+YAAGSAQA  +QGR  NAG RHENN GLLVA VL  I H+Y VF
Subjt:  PIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF

TrEMBL top hitse value%identityAlignment
A0A0A0KUR6 Uncharacterized protein8.3e-2856.33Show/hide
Query:  MGRTRRSQIMGFIFFLFCFSMATTSSSLQQ---ISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSN---RFSHSGSGGG------RDGG--GG
        MGR R  ++   IF LFC ++A +S++LQQ    + TES+YQQ+T  +KHGK  GVT+QI++RYS+SA+ VSN   R S SG GGG        GG  GG
Subjt:  MGRTRRSQIMGFIFFLFCFSMATTSSSLQQ---ISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSN---RFSHSGSGGG------RDGG--GG

Query:  SRPHAGGGTAIIPIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF
        SRP  GGGTA+IP+YAAGSAQA  +QGR  NAG  +ENNMGLLVA VL  I H+ RVF
Subjt:  SRPHAGGGTAIIPIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF

A0A1S3BFU8 uncharacterized protein LOC1034893821.8e-2757.55Show/hide
Query:  IFFLFCFSMATTSSSLQQ---ISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSG----GGRDGGGGSRPHAGGGTAIIPIYAAGS
        IF LFC ++A +S++LQQ    + TES+YQQ+T   K GK  GVT+QI +RYSASA+ VSN    +  G    GG + GGGSRPH GGGTA+IP+YAAGS
Subjt:  IFFLFCFSMATTSSSLQQ---ISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSG----GGRDGGGGSRPHAGGGTAIIPIYAAGS

Query:  AQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF
        AQAR +QGR  NAG  +ENN GLLVA VL  I H+ RV+
Subjt:  AQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF

A0A5A7SUI0 Uncharacterized protein1.8e-2757.55Show/hide
Query:  IFFLFCFSMATTSSSLQQ---ISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSG----GGRDGGGGSRPHAGGGTAIIPIYAAGS
        IF LFC ++A +S++LQQ    + TES+YQQ+T   K GK  GVT+QI +RYSASA+ VSN    +  G    GG + GGGSRPH GGGTA+IP+YAAGS
Subjt:  IFFLFCFSMATTSSSLQQ---ISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSG----GGRDGGGGSRPHAGGGTAIIPIYAAGS

Query:  AQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF
        AQAR +QGR  NAG  +ENN GLLVA VL  I H+ RV+
Subjt:  AQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF

A0A6J1GZ71 glycine-rich RNA-binding protein GRP1A-like9.8e-2956.85Show/hide
Query:  MGRTRRSQIMGFIFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAII
        MGR R   +M   F LFC ++   SS+L QQI  TES+Y Q+TN EKHGK DGVT++I   YSA A+ VS    H  + GG + GGG RP A GGG A+I
Subjt:  MGRTRRSQIMGFIFFLFCFSMATTSSSL-QQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAII

Query:  PIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF
        P+YAAGSAQA  +QGR RNAG  +ENNMGLLVA VL  I H++ VF
Subjt:  PIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF

A0A6J1JB47 uncharacterized protein LOC1114851594.1e-2754.79Show/hide
Query:  MGRTRRSQIMGFIFFLFCFSM-ATTSSSLQQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAII
        MGR R   +M   F LFC ++ A +S+  QQI  TE +Y Q+TN EKHG+ DGVT++I   YSA A+ VS    H  + GG + GGG RP A GGG A+I
Subjt:  MGRTRRSQIMGFIFFLFCFSM-ATTSSSLQQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSGGGRDGGGGSRPHA-GGGTAII

Query:  PIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF
        P+YAAGSAQA  +QGR RNAG  +ENNMGLLVA VL  I H++ VF
Subjt:  PIYAAGSAQARRQQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAACAAGAAGATCACAGATCATGGGATTTATTTTCTTTCTTTTTTGTTTTTCCATGGCTACTACTTCATCTTCTCTCCAACAAATTTCCACAACAGAATCTAG
TTACCAACAGCAAACTAACAAAGAAAAACATGGCAAAGATGATGGGGTTACCGACCAGATTGACAAAAGATACAGTGCGAGTGCAGTCGCAGTTTCGAATAGGTTCAGTC
ATTCGGGAAGCGGAGGTGGGAGAGATGGCGGCGGCGGAAGTAGACCTCATGCAGGAGGAGGTACCGCCATAATCCCTATCTATGCAGCTGGTTCGGCACAAGCACGTCGC
CAACAGGGTCGACGGCGCAATGCGGGAACTCGCCATGAGAATAACATGGGACTTTTGGTAGCTGGAGTTTTAGGTGTCATTACACATATGTACAGAGTTTTCTAA
mRNA sequenceShow/hide mRNA sequence
CCACTCCAACCTACACCACTTACTATAAAATAAATTAAACACCAACATATATAACACACATTTCTAAATAGAAAAACCTATTTCTTCAAAATATGGGAAGAACAAGAAGA
TCACAGATCATGGGATTTATTTTCTTTCTTTTTTGTTTTTCCATGGCTACTACTTCATCTTCTCTCCAACAAATTTCCACAACAGAATCTAGTTACCAACAGCAAACTAA
CAAAGAAAAACATGGCAAAGATGATGGGGTTACCGACCAGATTGACAAAAGATACAGTGCGAGTGCAGTCGCAGTTTCGAATAGGTTCAGTCATTCGGGAAGCGGAGGTG
GGAGAGATGGCGGCGGCGGAAGTAGACCTCATGCAGGAGGAGGTACCGCCATAATCCCTATCTATGCAGCTGGTTCGGCACAAGCACGTCGCCAACAGGGTCGACGGCGC
AATGCGGGAACTCGCCATGAGAATAACATGGGACTTTTGGTAGCTGGAGTTTTAGGTGTCATTACACATATGTACAGAGTTTTCTAATTTGTAGATGAGAGCTGTAACAA
ACGTATGCAACTCTGCCATGGCTTCTTGAATCCAAAAATGAGTTGTAATTTCTTGTACTTAAACTTGTAATAATACTCTGCCATGGCTTCTTCATAGGGGATGTACAAAA
TGTTTATTTTGTTAAGTTTTATACTGGACATTTAATTTGATTTTACCTATCTTTTATTTTAAGAGAAGTGATTTTTACTTCCAAATGCATAAAAATTGAAATAAATGTAA
TTTGAATGCAATAGAAATTTAAAAGTATGCACAAACTTGCCATGGTTGAAAGCATGTTATCAACCCTCACAAAACAAAGAACTAAACGAAGAATATTTG
Protein sequenceShow/hide protein sequence
MGRTRRSQIMGFIFFLFCFSMATTSSSLQQISTTESSYQQQTNKEKHGKDDGVTDQIDKRYSASAVAVSNRFSHSGSGGGRDGGGGSRPHAGGGTAIIPIYAAGSAQARR
QQGRRRNAGTRHENNMGLLVAGVLGVITHMYRVF