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Sed0025492 (gene) of Chayote v1 genome

Gene IDSed0025492
OrganismSechium edule (Chayote v1)
DescriptionPatatin
Genome locationLG01:10713676..10714020
RNA-Seq ExpressionSed0025492
SyntenySed0025492
Gene Ontology termsGO:0000162 - tryptophan biosynthetic process (biological process)
GO:0005737 - cytoplasm (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584077.1 hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sororia]2.4e-4077.39Show/hide
Query:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFC-SAFDVSESNQLNKISG
        MA TA VAIG+RGT+GSL+KKEIDY A+IE+ERCSS SSQRPQ PDMA+S CSSSPPTFWHSVM WRR KKKR+  RFVPK C SAFDVSESNQ+NKISG
Subjt:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFC-SAFDVSESNQLNKISG

Query:  HSYTILQNDYDSFHM
         +YTILQN++ S HM
Subjt:  HSYTILQNDYDSFHM

KAG7019678.1 hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-3976.52Show/hide
Query:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFC-SAFDVSESNQLNKISG
        MA TA VAIG+RGT+GSL+KKEIDY A+IE+ERCSS SSQRPQ PDMA+S CSS PPTFWHSVM WRR KKKR+  RFVPK C SAFDVSESNQ+NKISG
Subjt:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFC-SAFDVSESNQLNKISG

Query:  HSYTILQNDYDSFHM
         +YTILQN++ S HM
Subjt:  HSYTILQNDYDSFHM

KGN64543.2 hypothetical protein Csa_013063 [Cucumis sativus]5.7e-3471.05Show/hide
Query:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISGH
        MA  APVAIG+RGT+GSLVKKEIDY A+IE+E  +S SSQR QGP+MASS C SSPPTFW S+M WRR K K TS+RFV K CS FD S SN++NKISG 
Subjt:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISGH

Query:  SYTILQNDYDSFHM
        SYTILQND+ S HM
Subjt:  SYTILQNDYDSFHM

XP_011648422.1 uncharacterized protein LOC105434455 [Cucumis sativus]5.7e-3471.05Show/hide
Query:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISGH
        MA  APVAIG+RGT+GSLVKKEIDY A+IE+E  +S SSQR QGP+MASS C SSPPTFW S+M WRR K K TS+RFV K CS FD S SN++NKISG 
Subjt:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISGH

Query:  SYTILQNDYDSFHM
        SYTILQND+ S HM
Subjt:  SYTILQNDYDSFHM

XP_016898893.1 PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo]6.7e-3570.18Show/hide
Query:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISGH
        MA TAPVAIG+RGT+GSL+KKEIDY A+IE+E  +S SSQR QGP+MASS C SSPPTFW S+M WRR KKK TS+RF+ K CS FD S SN++NKISG 
Subjt:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISGH

Query:  SYTILQNDYDSFHM
        SYTILQND+ S H+
Subjt:  SYTILQNDYDSFHM

TrEMBL top hitse value%identityAlignment
A0A0A0LX43 Uncharacterized protein2.7e-3471.05Show/hide
Query:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISGH
        MA  APVAIG+RGT+GSLVKKEIDY A+IE+E  +S SSQR QGP+MASS C SSPPTFW S+M WRR K K TS+RFV K CS FD S SN++NKISG 
Subjt:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISGH

Query:  SYTILQNDYDSFHM
        SYTILQND+ S HM
Subjt:  SYTILQNDYDSFHM

A0A1S4DSE9 uncharacterized protein LOC1034854093.2e-3570.18Show/hide
Query:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISGH
        MA TAPVAIG+RGT+GSL+KKEIDY A+IE+E  +S SSQR QGP+MASS C SSPPTFW S+M WRR KKK TS+RF+ K CS FD S SN++NKISG 
Subjt:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISGH

Query:  SYTILQNDYDSFHM
        SYTILQND+ S H+
Subjt:  SYTILQNDYDSFHM

A0A5A7UTL1 Uncharacterized protein2.7e-2970.71Show/hide
Query:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISG
        MA TAPVAIG+RGT+GSL+KKEIDY A+IE+E  +S SSQR QGP+MASS C SSPPTFW S+M WRR KKK TS+RF+ K CS FD S SN++NKISG
Subjt:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISG

A0A5E4F0Q6 PREDICTED: unnamed product partial3.2e-2252.54Show/hide
Query:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIER-CSSSSSQRPQGP--DMASSSCS-SSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNK
        MA  AP+AIG+RGTVGSLV+KEI+Y   +E++R C +SSS++PQG   DM SSSC+ SS P+FW  +M W  K+KKR+S RF+   CSA  V+E+N+LN 
Subjt:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIER-CSSSSSQRPQGP--DMASSSCS-SSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNK

Query:  ISGHSYTILQNDYDSFHM
        I G +Y IL++D ++  +
Subjt:  ISGHSYTILQNDYDSFHM

A0A6J1CHB1 uncharacterized protein LOC1110108621.4e-3372.17Show/hide
Query:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSS-CSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISG
        MA TAPVAIG+RGTVGSLVKKEIDY A+IE ERCS        G DMASSS  SSSPPTFWH+VM WRR KKKR  +RF+ K CSAFDVS SN+LNKISG
Subjt:  MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSS-CSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISG

Query:  HSYTILQNDYDSFHM
         +YTILQND++S HM
Subjt:  HSYTILQNDYDSFHM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G21780.1 unknown protein1.4e-0935.96Show/hide
Query:  VTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSC-----SSSPPTFWHSVMLWRRKKKKRT--SHRFVPKFCSAFDVSESNQLN
        + AP+AIG+RGT+GSLV+KEIDY        C      R    +   ++      SSS    W S   WR+KK++      +F P  CSA +VS     N
Subjt:  VTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSC-----SSSPPTFWHSVMLWRRKKKKRT--SHRFVPKFCSAFDVSESNQLN

Query:  KISGHSYTILQNDY
        ++ G +Y IL++D+
Subjt:  KISGHSYTILQNDY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTAACTGCTCCTGTTGCAATTGGATCTCGGGGCACCGTGGGATCGCTTGTCAAGAAGGAAATTGATTATTTGGCCCGGATTGAGATTGAAAGATGCAGCAGCAG
CAGCTCACAGAGGCCTCAAGGACCTGATATGGCTTCCTCTAGCTGCAGCAGTTCCCCTCCCACTTTCTGGCACTCTGTAATGCTGTGGAGAAGGAAGAAGAAGAAGCGAA
CCAGCCATCGTTTTGTACCCAAATTTTGCTCGGCTTTCGATGTTTCGGAAAGCAATCAGCTGAATAAGATTTCTGGGCACAGTTATACGATCCTTCAGAACGATTACGAC
AGCTTCCACATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTAACTGCTCCTGTTGCAATTGGATCTCGGGGCACCGTGGGATCGCTTGTCAAGAAGGAAATTGATTATTTGGCCCGGATTGAGATTGAAAGATGCAGCAGCAG
CAGCTCACAGAGGCCTCAAGGACCTGATATGGCTTCCTCTAGCTGCAGCAGTTCCCCTCCCACTTTCTGGCACTCTGTAATGCTGTGGAGAAGGAAGAAGAAGAAGCGAA
CCAGCCATCGTTTTGTACCCAAATTTTGCTCGGCTTTCGATGTTTCGGAAAGCAATCAGCTGAATAAGATTTCTGGGCACAGTTATACGATCCTTCAGAACGATTACGAC
AGCTTCCACATGTAG
Protein sequenceShow/hide protein sequence
MAVTAPVAIGSRGTVGSLVKKEIDYLARIEIERCSSSSSQRPQGPDMASSSCSSSPPTFWHSVMLWRRKKKKRTSHRFVPKFCSAFDVSESNQLNKISGHSYTILQNDYD
SFHM