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Sed0025499 (gene) of Chayote v1 genome

Gene IDSed0025499
OrganismSechium edule (Chayote v1)
Descriptionextensin-like isoform X2
Genome locationLG01:8693408..8693777
RNA-Seq ExpressionSed0025499
SyntenySed0025499
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031836.1 Protein PSY3 [Cucumis melo var. makuwa]8.9e-0868.52Show/hide
Query:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPP
        KARL+L LLLSFVLV SARI PHS NQ    +I+DY DPGANP HD   P PPP
Subjt:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPP

KAA0031837.1 hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa]3.4e-0760.71Show/hide
Query:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPPPR
        K RL+L+LLLSF +V  ARI PHS NQ +   I+DY DPGANP HD   P PPPP+
Subjt:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPPPR

KGN65816.1 hypothetical protein Csa_023196 [Cucumis sativus]1.5e-0764.81Show/hide
Query:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPP
        KARL+L LLLSF L  SARI PHS NQ  T +++DY+DPGANP HD   P PPP
Subjt:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPP

XP_023522911.1 extensin-like, partial [Cucurbita pepo subsp. pepo]2.0e-0761.67Show/hide
Query:  MEFKARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPS--PPPP
        MEFKARL LV LLSF  V SARI   SG Q I +VI+DY+DPG NP+  P +P   PPPP
Subjt:  MEFKARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPS--PPPP

XP_038895781.1 circumsporozoite protein-like [Benincasa hispida]6.2e-0968.63Show/hide
Query:  FKARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLP
        FKARL+  LLLSF L+  ARITPHS +Q  T+ I+DYADPGANP HDPN P
Subjt:  FKARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLP

TrEMBL top hitse value%identityAlignment
A0A0A0LV67 Uncharacterized protein1.0e-0969.64Show/hide
Query:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPPPR
        KARLSL+LLLSFVLV SARI PHS NQ +  +I+DY DPGANP H+   P PPPPR
Subjt:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPPPR

A0A0A0M0T8 Uncharacterized protein7.3e-0864.81Show/hide
Query:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPP
        KARL+L LLLSF L  SARI PHS NQ  T +++DY+DPGANP HD   P PPP
Subjt:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPP

A0A5A7SMH7 Uncharacterized protein1.6e-0765.52Show/hide
Query:  FKARL-SLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPPPR
        FKARL +L LLLSF LV SARI PHS NQ    +I+DY DPGANP HD   P PPPP+
Subjt:  FKARL-SLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPPPR

A0A5A7SPC6 Protein PSY34.3e-0868.52Show/hide
Query:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPP
        KARL+L LLLSFVLV SARI PHS NQ    +I+DY DPGANP HD   P PPP
Subjt:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPP

A0A5D3BBU7 Uncharacterized protein1.6e-0760.71Show/hide
Query:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPPPR
        K RL+L+LLLSF +V  ARI PHS NQ +   I+DY DPGANP HD   P PPPP+
Subjt:  KARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPPPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTAAAGCTCGTCTTTCTCTCGTCCTCTTGCTCTCGTTTGTTCTTGTCATCTCAGCTCGAATCACGCCTCATTCAGGAAATCAAGCGATCACGGTTGTGATACA
CGACTATGCTGATCCAGGGGCTAATCCAAGCCATGATCCAAACCTTCCATCGCCACCGCCACCACGGCCGTGCCACCACAGGAGAACTTGTTGGCAGCAGCATCAGAAAG
GAAGCTTAAACAAAGAATATAATGATATGCAAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTTAAAGCTCGTCTTTCTCTCGTCCTCTTGCTCTCGTTTGTTCTTGTCATCTCAGCTCGAATCACGCCTCATTCAGGAAATCAAGCGATCACGGTTGTGATACA
CGACTATGCTGATCCAGGGGCTAATCCAAGCCATGATCCAAACCTTCCATCGCCACCGCCACCACGGCCGTGCCACCACAGGAGAACTTGTTGGCAGCAGCATCAGAAAG
GAAGCTTAAACAAAGAATATAATGATATGCAAGAGTAA
Protein sequenceShow/hide protein sequence
MEFKARLSLVLLLSFVLVISARITPHSGNQAITVVIHDYADPGANPSHDPNLPSPPPPRPCHHRRTCWQQHQKGSLNKEYNDMQE