CuGenDBv2

Gene ID	Sed0025520
Organism	Sechium edule (Chayote v1)
Description	cell wall protein RBR3-like isoform X2
Genome location	LG11:35093697..35096772
RNA-Seq Expression	Sed0025520
Synteny	Sed0025520
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022134150.1 uncharacterized protein LOC111006488 isoform X3 [Momordica charantia]

1.6e-72

66.15

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Query:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPNPTSDSRPTEP------
        ME+ KRNLRARKPLSDCTNTVLSSQSSASN S+ IKPR+RVIKSAVK +V+N+KKGESS  S S S++LQA NPSSD  P EPNP+SD  PTEP      
Subjt:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPNPTSDSRPTEP------

Query:  ----------------------------SSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEY
                                    SSSLP   EASTP RRADLPS+SGTD VSEPQSFYSRR+PTNKRKS EI FTPF+F++ASKI T  E+R+ Y
Subjt:  ----------------------------SSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEY

Query:  CSTFKARTVPYKKRQCTTKYGED-AKIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE
         S  KARTVP KKRQ  T YG+D +KIELPREFVE+QKAYFSEVDAF+L+VEEAKSSDSE
Subjt:  CSTFKARTVPYKKRQCTTKYGED-AKIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE

XP_022952551.1 uncharacterized protein LOC111455207 isoform X1 [Cucurbita moschata]

3.9e-71

71.06

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Query:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEP---------NPTSDSRP
        MESQKRNLR RKPL+DCTNTVLSSQSSASNLSAAIKPRKRV+KSAVK  V+N+K+G SS  S STSV+LQA NPSS+F P +P         NP+SDS P
Subjt:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEP---------NPTSDSRP

Query:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A
        TEPSSS  P  E STP R  DLPS+SGTD V EPQSFYSRR+P N+RKS E    PF+FS+ASKI +R E+R    S  +ARTVPY+KRQ  T YGED +
Subjt:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A

Query:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE
        KIELPREFVE+QKAYFSEVDAFELLVEEAKSSDSE
Subjt:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE

XP_022991070.1 uncharacterized protein LOC111487776 isoform X1 [Cucurbita maxima]

2.3e-71

71.91

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Query:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPN---------PTSDSRP
        MESQKRNLR RKPL+DCTNTVLSSQSSASNLSAAIKPRKRV+K AVK  V+N+K+G SS  S STSV+LQA NPSSDF P +P+         PTSDS P
Subjt:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPN---------PTSDSRP

Query:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A
        TEPSSS  P  E STP R  DLPS+SGTD V EPQSFYSRR+P N+RKS E    PFVFS+ASKI TR E+R    S  +ARTVPY+KRQ  T YGED +
Subjt:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A

Query:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE
        KIELPREFVE+QKAYFSEVDAFELLVEEAKSSDSE
Subjt:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE

XP_023515045.1 uncharacterized protein LOC111779162 isoform X1 [Cucurbita pepo subsp. pepo]

1.1e-70

70.64

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Query:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEP---------NPTSDSRP
        MESQKRNLR RKPL+DCTNTVLSSQSSASNLSAAIKPRKRV+KSAVK  ++N+K+G SS  S STSV+LQA NPSS+F P +P         NP+SDS P
Subjt:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEP---------NPTSDSRP

Query:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A
        TEPSSS  P  E STP R  DLPS+SGTD V EPQSFYSRR+P N+RKS E    PF+FS+ASKI TR E+R    S  +ARTVPY+KRQ    YGED +
Subjt:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A

Query:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE
        KIELPREFVE+QKAYFSEVDAFELLVEEAKSSDSE
Subjt:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE

XP_038884349.1 uncharacterized protein LOC120075210 isoform X3 [Benincasa hispida]

5.7e-70

70.64

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Query:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPS---------SDFAPKEPNPTSDSRP
        MESQKR LRARKPL+DCTNT+LSSQSSASN SA+IKPRKRVIKSAVK  V+N+KK +    S STSV+L+A NPS         SDF+P EPNP++DS P
Subjt:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPS---------SDFAPKEPNPTSDSRP

Query:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A
        +EPSSS  P  E STP RRADLPS+SGTD VSEPQSFYSRR PTNKRKSVEI   PF+FS++SKI TR  +R  Y S  KA+TVP KKRQ  T Y +D +
Subjt:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A

Query:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE
         IELPREFVEQQKAYFSEVDAFEL VEEAKSSDSE
Subjt:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BXA7 uncharacterized protein LOC111006488 isoform X3

7.7e-73

66.15

Show/hide

Query:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPNPTSDSRPTEP------
        ME+ KRNLRARKPLSDCTNTVLSSQSSASN S+ IKPR+RVIKSAVK +V+N+KKGESS  S S S++LQA NPSSD  P EPNP+SD  PTEP      
Subjt:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPNPTSDSRPTEP------

Query:  ----------------------------SSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEY
                                    SSSLP   EASTP RRADLPS+SGTD VSEPQSFYSRR+PTNKRKS EI FTPF+F++ASKI T  E+R+ Y
Subjt:  ----------------------------SSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEY

Query:  CSTFKARTVPYKKRQCTTKYGED-AKIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE
         S  KARTVP KKRQ  T YG+D +KIELPREFVE+QKAYFSEVDAF+L+VEEAKSSDSE
Subjt:  CSTFKARTVPYKKRQCTTKYGED-AKIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE

A0A6J1C164 uncharacterized protein LOC111006488 isoform X1

4.7e-70

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Query:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPNPTSDSRPTEP------
        ME+ KRNLRARKPLSDCTNTVLSSQSSASN S+ IKPR+RVIKSAVK +V+N+KKGESS  S S S++LQA NPSSD  P EPNP+SD  PTEP      
Subjt:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPNPTSDSRPTEP------

Query:  ----------------------------SSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEY
                                    SSSLP   EASTP RRADLPS+SGTD VSEPQSFYSRR+PTNKRKS EI FTPF+F++ASKI T  E+R+ Y
Subjt:  ----------------------------SSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEY

Query:  CSTFKARTVPYKK-------------RQCTTKYGED-AKIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE
         S  KARTVP KK             RQ  T YG+D +KIELPREFVE+QKAYFSEVDAF+L+VEEAKSSDSE
Subjt:  CSTFKARTVPYKK-------------RQCTTKYGED-AKIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE

A0A6J1GKJ2 uncharacterized protein LOC111455207 isoform X1

1.9e-71

71.06

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Query:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEP---------NPTSDSRP
        MESQKRNLR RKPL+DCTNTVLSSQSSASNLSAAIKPRKRV+KSAVK  V+N+K+G SS  S STSV+LQA NPSS+F P +P         NP+SDS P
Subjt:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEP---------NPTSDSRP

Query:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A
        TEPSSS  P  E STP R  DLPS+SGTD V EPQSFYSRR+P N+RKS E    PF+FS+ASKI +R E+R    S  +ARTVPY+KRQ  T YGED +
Subjt:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A

Query:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE
        KIELPREFVE+QKAYFSEVDAFELLVEEAKSSDSE
Subjt:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE

A0A6J1JPQ1 cell wall protein RBR3-like isoform X2

6.8e-69

71.06

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Query:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPN---------PTSDSRP
        MESQKRNLR RKPL+DCTNTVLSSQSSASNLSAAIKPRKRV+K AVK  V+N+K+G SS  S STSV+LQA NPSSDF P +P+         PTSDS P
Subjt:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPN---------PTSDSRP

Query:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A
        TEPSSS  P  E STP R  DLPS+S  D V EPQSFYSRR+P N+RKS E    PFVFS+ASKI TR E+R    S  +ARTVPY+KRQ  T YGED +
Subjt:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A

Query:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE
        KIELPREFVE+QKAYFSEVDAFELLVEEAKSSDSE
Subjt:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE

A0A6J1JRU8 uncharacterized protein LOC111487776 isoform X1

1.1e-71

71.91

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Query:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPN---------PTSDSRP
        MESQKRNLR RKPL+DCTNTVLSSQSSASNLSAAIKPRKRV+K AVK  V+N+K+G SS  S STSV+LQA NPSSDF P +P+         PTSDS P
Subjt:  MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPN---------PTSDSRP

Query:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A
        TEPSSS  P  E STP R  DLPS+SGTD V EPQSFYSRR+P N+RKS E    PFVFS+ASKI TR E+R    S  +ARTVPY+KRQ  T YGED +
Subjt:  TEPSSSLPPIVEASTPLRRADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGED-A

Query:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE
        KIELPREFVE+QKAYFSEVDAFELLVEEAKSSDSE
Subjt:  KIELPREFVEQQKAYFSEVDAFELLVEEAKSSDSE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G56250.1 unknown protein

4.6e-09

33.33

Show/hide

Query:  RKPLSDCTNTV-LSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPNPTSDSRPTEPSSSLPPIVEASTPLR
        RKPL+DCTNTV  SSQ S+S++  A       +K  V+ +   +K  +   V+ S +    A  P           T+D RP     S      AS P R
Subjt:  RKPLSDCTNTV-LSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPNPTSDSRPTEPSSSLPPIVEASTPLR

Query:  RADLPSTSGTD------TVSEPQSFYS-RRNPTNKRKSVEIEFTPFV-------FSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKY-GEDAKIEL
            P TS +D        +EP S Y+ RR  + +++S +   +           SS+S  +TR    N+     K   V  KKRQ T K   ED     
Subjt:  RADLPSTSGTD------TVSEPQSFYS-RRNPTNKRKSVEIEFTPFV-------FSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKY-GEDAKIEL

Query:  PREFVEQQKAYFSEVDAFELLVEEAKSSDSE
         ++++E+QKAYF+E+DAFEL VEE  +SDS+
Subjt:  PREFVEQQKAYFSEVDAFELLVEEAKSSDSE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAATCCCAGAAACGAAATCTCAGAGCTCGAAAACCACTCTCCGATTGTACCAACACCGTCCTCTCTTCGCAATCGTCGGCTTCGAATCTCTCCGCCGCCATCAAACC
TCGAAAACGTGTAATCAAATCCGCAGTTAAACATTCTGTGAGCAATAAGAAGAAAGGCGAATCAAGTGCTGTGTCTGTATCTACATCCGTTCATTTGCAAGCTCCAAACC
CTAGCTCTGATTTTGCTCCTAAGGAACCAAATCCAACTTCCGATTCTCGTCCTACAGAACCTAGTTCCAGTTTGCCTCCTATCGTAGAAGCTTCCACTCCTTTGCGTCGT
GCTGATTTGCCATCTACTTCAGGAACCGATACTGTTTCTGAACCTCAGTCCTTCTACAGTCGAAGGAACCCTACGAATAAAAGGAAGAGCGTTGAGATAGAATTTACACC
GTTTGTTTTCTCTTCTGCATCAAAAATCCAAACTAGGGCCGAGGAAAGAAATGAATATTGTAGCACTTTCAAAGCGAGGACTGTTCCTTATAAAAAGAGGCAATGTACCA
CAAAATATGGGGAAGATGCAAAGATTGAGCTTCCACGGGAATTTGTTGAGCAGCAAAAGGCATATTTTTCAGAAGTAGATGCATTTGAACTGCTAGTGGAGGAGGCTAAA
TCATCCGACTCGGAGTAG

mRNA sequence

Show/hide mRNA sequence

TAACACTCGAATCTTCCCGTCGAAGTTTGAAGTTCGCCGCTACTTTCCCGCCACCGCCACCGCCACCGCCAACGCCGCTGCTGCCAACTTTTTCCGTTCAAGTTAATTAT
CGTATCTACTTCACCATGAAGATTAGAGACCACTTTCTTATCCCTCTGTGAATCGGAAAGGAGTAGTAGATGGAATCCCAGAAACGAAATCTCAGAGCTCGAAAACCACT
CTCCGATTGTACCAACACCGTCCTCTCTTCGCAATCGTCGGCTTCGAATCTCTCCGCCGCCATCAAACCTCGAAAACGTGTAATCAAATCCGCAGTTAAACATTCTGTGA
GCAATAAGAAGAAAGGCGAATCAAGTGCTGTGTCTGTATCTACATCCGTTCATTTGCAAGCTCCAAACCCTAGCTCTGATTTTGCTCCTAAGGAACCAAATCCAACTTCC
GATTCTCGTCCTACAGAACCTAGTTCCAGTTTGCCTCCTATCGTAGAAGCTTCCACTCCTTTGCGTCGTGCTGATTTGCCATCTACTTCAGGAACCGATACTGTTTCTGA
ACCTCAGTCCTTCTACAGTCGAAGGAACCCTACGAATAAAAGGAAGAGCGTTGAGATAGAATTTACACCGTTTGTTTTCTCTTCTGCATCAAAAATCCAAACTAGGGCCG
AGGAAAGAAATGAATATTGTAGCACTTTCAAAGCGAGGACTGTTCCTTATAAAAAGAGGCAATGTACCACAAAATATGGGGAAGATGCAAAGATTGAGCTTCCACGGGAA
TTTGTTGAGCAGCAAAAGGCATATTTTTCAGAAGTAGATGCATTTGAACTGCTAGTGGAGGAGGCTAAATCATCCGACTCGGAGTAGACGATACGATGATACGATTCTGT
ATAGTTTTTTTTTTTTTTTTTGTGAGGCATAGGC

Protein sequence

Show/hide protein sequence

MESQKRNLRARKPLSDCTNTVLSSQSSASNLSAAIKPRKRVIKSAVKHSVSNKKKGESSAVSVSTSVHLQAPNPSSDFAPKEPNPTSDSRPTEPSSSLPPIVEASTPLRR
ADLPSTSGTDTVSEPQSFYSRRNPTNKRKSVEIEFTPFVFSSASKIQTRAEERNEYCSTFKARTVPYKKRQCTTKYGEDAKIELPREFVEQQKAYFSEVDAFELLVEEAK
SSDSE

Sed0025520 (gene) of Chayote v1 genome