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Sed0025544 (gene) of Chayote v1 genome

Gene IDSed0025544
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG12:2212598..2213326
RNA-Seq ExpressionSed0025544
SyntenySed0025544
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG50387.1 hypothetical protein EZV62_022911 [Acer yangbiense]9.3e-1828.64Show/hide
Query:  WCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMVSM
        W +W +RN  V G         + W    ++ NEFR  N      H+E        +  W  P    FKIN DA+ +     +G+G++I++ KG A+ + 
Subjt:  WCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMVSM

Query:  AKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDEEA
        + PV     V+++EA A  +G+ +A  +G   V +E D+ S++ LL  +T   TELG I++    + + +   S+    R  N +AH +A+  + +D   
Subjt:  AKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDEEA

Query:  IWVEEVSMDVEEL
        +W EE+  D+  L
Subjt:  IWVEEVSMDVEEL

XP_015383853.1 uncharacterized protein LOC107176237 [Citrus sinensis]1.2e-1729.17Show/hide
Query:  MCWCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREY-TQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAM
        +CW +W  +NK +      + G  M+     S +    E   +V     E     +S +++ W+PP    FK+N DAA+  E + +G+G+VI++   +  
Subjt:  MCWCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREY-TQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAM

Query:  VSMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMD
        V+  K      DV+  EA AV+ GL++A++  FQ + VE D   +V L+  K    TE+  +++EI  ++      S +   R+ N  AH+LAKL +  +
Subjt:  VSMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMD

Query:  EEAIWVEEVSMDVEEL
        E  +W+E + ++VE +
Subjt:  EEAIWVEEVSMDVEEL

XP_015385737.1 uncharacterized protein LOC107177033 [Citrus sinensis]2.4e-1828.7Show/hide
Query:  MCWCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREY-TQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAM
        +CW +W  +NK +      + G  M+     S +    E   +V     E     +S +++ W+PP    FK+N DAA+  + + +G+G+VI++   +  
Subjt:  MCWCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREY-TQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAM

Query:  VSMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMD
        V+  K      DVQ  EA AV+ GL++A++  FQ + VE D   +V L+       TE+  +++EI  ++      S++   R+ N  AH+LAKL +  +
Subjt:  VSMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMD

Query:  EEAIWVEEVSMDVEEL
        E  +W+E + ++VE +
Subjt:  EEAIWVEEVSMDVEEL

XP_015385738.1 uncharacterized protein LOC107177034 [Citrus sinensis]1.3e-1928.37Show/hide
Query:  MCWCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMV
        +CW +W  RNK +  G      L +  +  ++ +  +R           +Y+ +N   ++ W+PP    FK+N DAA+  + + +G+G+VI++   +  V
Subjt:  MCWCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMV

Query:  SMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDE
        +  K      DVQ  EA AV+ GL++A++  FQ + VE D   +V L+       TE+  +++EI  ++      S++   R+ N  AH+LAKL +  +E
Subjt:  SMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDE

Query:  EAIWVEEVSMDVEEL
          +W+E + ++VE +
Subjt:  EAIWVEEVSMDVEEL

XP_030958792.1 uncharacterized protein LOC115980708 [Quercus lobata]7.1e-1830.1Show/hide
Query:  CWCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMVS
        CW +W  RN  + GG   +          Q  ++  +E  A   S+H          ++ W PP    FK+N D+A  +E  +SG G VI+NEKG+ M +
Subjt:  CWCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMVS

Query:  MAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDEE
        +A     V D + VE MA +  L  A  +GF  + +E D+  ++ ++ +    +++LG I  +IW +A+     S++   R+ N +AH+LA+    +D E
Subjt:  MAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDEE

Query:  AIWVEE
         +W+EE
Subjt:  AIWVEE

TrEMBL top hitse value%identityAlignment
A0A2N9J3G2 Fe2OG dioxygenase domain-containing protein1.1e-1627.35Show/hide
Query:  CWCVWQDRNKEVRGGGSD-YNGLPMDWNFCQSYINEFRETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMV
        CW +W  RN +     S+ Y+ L   W   QS ++E+   N +      E  Q+    +  W  P    +K+N D AI ++  S G+G+VI++  G+ + 
Subjt:  CWCVWQDRNKEVRGGGSD-YNGLPMDWNFCQSYINEFRETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMV

Query:  SMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDE
        ++++ V+G   V+++EA+A +  ++ A  +G   VEVE D+ +I+  L       T  G ++ +   +   L   S     R+ N +AHALA+     + 
Subjt:  SMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDE

Query:  EAIWVEEVSMDVEELYNREKIEFLSDLASVFIQR
         ++W+EEV  D+  +        +SDL ++  QR
Subjt:  EAIWVEEVSMDVEELYNREKIEFLSDLASVFIQR

A0A5C7H0P0 Uncharacterized protein4.5e-1828.64Show/hide
Query:  WCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMVSM
        W +W +RN  V G         + W    ++ NEFR  N      H+E        +  W  P    FKIN DA+ +     +G+G++I++ KG A+ + 
Subjt:  WCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMVSM

Query:  AKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDEEA
        + PV     V+++EA A  +G+ +A  +G   V +E D+ S++ LL  +T   TELG I++    + + +   S+    R  N +AH +A+  + +D   
Subjt:  AKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDEEA

Query:  IWVEEVSMDVEEL
        +W EE+  D+  L
Subjt:  IWVEEVSMDVEEL

A0A6J1CIF1 uncharacterized protein LOC1110112372.9e-1730.61Show/hide
Query:  FCQSYINEFRETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMVSMAKPVYGVIDVQLVEAMAVQDGLLMAE
        +   Y+ EFRE N+  F      T +       W PP+   +KINTDA+     + +G+G++I+N++G+ M S  K +  +  V + EA+   +GL +A 
Subjt:  FCQSYINEFRETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMVSMAKPVYGVIDVQLVEAMAVQDGLLMAE

Query:  AMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDEEAIWVEEVSMDVEELYNREKIEFL
         +G   V +E DS+ I NL  + ++ ++E G+IV +     +    ASF++  R  NK AH LA+  + + E +IW+E+  ++++     E +E L
Subjt:  AMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDEEAIWVEEVSMDVEELYNREKIEFL

A0A7N2L9Q3 RNase H domain-containing protein1.3e-1732.05Show/hide
Query:  EWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMVSMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGK
        +W PP  P +K N DAA+ E++  +G+G+V+++  G  + ++++ +     V+L EA+A +  +L A  +   +V VE D   ++  L  +  C+T  G 
Subjt:  EWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMVSMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGK

Query:  IVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDEEAIWVEEVSMDVEELY
        +V E  ++ SCL   SFH   R  NKLAH+LA+  +   +  +WVEE+  D++ ++
Subjt:  IVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDEEAIWVEEVSMDVEELY

A0A7N2LIC5 RNase H domain-containing protein1.1e-1631.41Show/hide
Query:  EWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMVSMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGK
        +W PP  P +K N DAA+ E +  +G+G+V+++  G  + ++++ +     V+L EA+A +  ++ A  +   +V VE D   ++  L  +  C+T  G 
Subjt:  EWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMVSMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGK

Query:  IVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDEEAIWVEEVSMDVEELY
        +V E  ++ SCL   SFH   R  NKLAH+LA+  +      +WVEE+  D++ ++
Subjt:  IVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDEEAIWVEEVSMDVEELY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.8e-0725.13Show/hide
Query:  MCWCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREYTQQNSFDKKE------WNPPNYPNFKINTDAAIREEMRSSGMGMVIKNE
        + W +W+ RN E+   G +Y+   +     +  + +F E     +ST RE   + S  + E      W  P Y   K NTDA  + E    G+G +++NE
Subjt:  MCWCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREYTQQNSFDKKE------WNPPNYPNFKINTDAAIREEMRSSGMGMVIKNE

Query:  KGEAMVSMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAK
         G  +   A+ +    +V   E  A++  +L      ++R+  E D+ ++VNLL       T L   + +I ++        F +  R  NK+A  +A+
Subjt:  KGEAMVSMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAK

AT4G29090.1 Ribonuclease H-like superfamily protein4.6e-0725.26Show/hide
Query:  MCWCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFR-ETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAM
        + W +W++RN E+   G ++N   +     +  + E+R  T A+   T     Q N      W PP +   K NTDA    +    G+G V++NEKGE  
Subjt:  MCWCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFR-ETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAM

Query:  VSMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAK
           A+ +  +  V   E  A++  +L      +  V  E DS  ++ +L    +    L   + ++ ++ S  T   F +  R  N LA  +A+
Subjt:  VSMAKPVYGVIDVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTGGTGTGTGTGGCAAGATCGAAATAAGGAGGTGAGGGGTGGAGGAAGTGATTATAATGGTTTGCCTATGGATTGGAATTTTTGTCAATCCTATATTAATGAGTT
TAGGGAAACAAATGCAAAGGTTTTCTCTACTCATCGTGAGTATACACAACAGAACAGTTTCGACAAGAAAGAGTGGAATCCCCCTAATTATCCTAATTTCAAAATAAATA
CTGATGCTGCTATCCGAGAGGAAATGAGAAGTAGTGGAATGGGCATGGTGATTAAAAACGAAAAAGGTGAAGCTATGGTTTCCATGGCCAAACCTGTTTATGGAGTTATA
GACGTGCAACTGGTTGAGGCTATGGCGGTTCAAGATGGTTTATTGATGGCAGAGGCGATGGGCTTTCAACGTGTTGAGGTCGAGTTGGATTCGACTTCAATTGTGAATCT
CCTACAACGGAAAACGAAATGCATCACTGAATTGGGCAAAATCGTTAATGAAATTTGGAAAATTGCAAGCTGCCTTACTTTCGCGTCGTTCCATTGGTGTGGTCGAAATA
TGAATAAATTGGCACATGCTCTAGCAAAATTGGTAATTCCCATGGATGAAGAAGCAATTTGGGTGGAGGAAGTCTCAATGGATGTGGAAGAGCTTTACAATCGAGAGAAG
ATTGAGTTTCTTAGTGATCTTGCAAGTGTTTTTATTCAACGCCATTTTTGTAATTCATGCTTTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTGGTGTGTGTGGCAAGATCGAAATAAGGAGGTGAGGGGTGGAGGAAGTGATTATAATGGTTTGCCTATGGATTGGAATTTTTGTCAATCCTATATTAATGAGTT
TAGGGAAACAAATGCAAAGGTTTTCTCTACTCATCGTGAGTATACACAACAGAACAGTTTCGACAAGAAAGAGTGGAATCCCCCTAATTATCCTAATTTCAAAATAAATA
CTGATGCTGCTATCCGAGAGGAAATGAGAAGTAGTGGAATGGGCATGGTGATTAAAAACGAAAAAGGTGAAGCTATGGTTTCCATGGCCAAACCTGTTTATGGAGTTATA
GACGTGCAACTGGTTGAGGCTATGGCGGTTCAAGATGGTTTATTGATGGCAGAGGCGATGGGCTTTCAACGTGTTGAGGTCGAGTTGGATTCGACTTCAATTGTGAATCT
CCTACAACGGAAAACGAAATGCATCACTGAATTGGGCAAAATCGTTAATGAAATTTGGAAAATTGCAAGCTGCCTTACTTTCGCGTCGTTCCATTGGTGTGGTCGAAATA
TGAATAAATTGGCACATGCTCTAGCAAAATTGGTAATTCCCATGGATGAAGAAGCAATTTGGGTGGAGGAAGTCTCAATGGATGTGGAAGAGCTTTACAATCGAGAGAAG
ATTGAGTTTCTTAGTGATCTTGCAAGTGTTTTTATTCAACGCCATTTTTGTAATTCATGCTTTGTTTAA
Protein sequenceShow/hide protein sequence
MCWCVWQDRNKEVRGGGSDYNGLPMDWNFCQSYINEFRETNAKVFSTHREYTQQNSFDKKEWNPPNYPNFKINTDAAIREEMRSSGMGMVIKNEKGEAMVSMAKPVYGVI
DVQLVEAMAVQDGLLMAEAMGFQRVEVELDSTSIVNLLQRKTKCITELGKIVNEIWKIASCLTFASFHWCGRNMNKLAHALAKLVIPMDEEAIWVEEVSMDVEELYNREK
IEFLSDLASVFIQRHFCNSCFV