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Sed0025561 (gene) of Chayote v1 genome

Gene IDSed0025561
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S21
Genome locationLG09:1899304..1901483
RNA-Seq ExpressionSed0025561
SyntenySed0025561
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR018279 - Ribosomal protein S21e, conserved site
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]2.1e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]6.1e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADS LDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]4.7e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]6.1e-3896.34Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

XP_022959410.1 40S ribosomal protein S21-2 isoform X2 [Cucurbita moschata]1.0e-3795.12Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADS +DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

TrEMBL top hitse value%identityAlignment
A0A0A0L7W3 40S ribosomal protein S211.0e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

A0A1S4DSM1 40S ribosomal protein S211.0e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

A0A5D3CXC9 40S ribosomal protein S211.0e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

A0A6J1CCM4 40S ribosomal protein S212.3e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

A0A6J1KDN2 40S ribosomal protein S212.9e-3896.34Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S211.9e-3479.27Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQGDADS LDRLWQK+K EV+QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

Q3E902 40S ribosomal protein S21-23.7e-3887.65Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADSG+DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ

Q41852 40S ribosomal protein S217.2e-3479.01Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS LDRLWQKKK E++Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ

Q9M337 40S ribosomal protein S21-15.4e-3782.93Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADSG+DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

Q9SMI2 40S ribosomal protein S218.0e-2566.67Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSGLDRLWQK
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+ G++D+ L+RL  K
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSGLDRLWQK

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e3.8e-3882.93Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADSG+DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

AT3G53890.2 Ribosomal protein S21e3.8e-3882.93Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADSG+DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

AT5G27700.1 Ribosomal protein S21e2.6e-3987.65Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADSG+DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGCTCTGCGACGAACAGACTCATCACCTCCAAGGACCATGCTTCGGTTCAAATTAACATCGG
TCACTTGGATGAGAATGGCATCTACACTGGCCAATTCTCCACTTTTGCTCTCTGCGGATTCATCCGTGCTCAGGGAGATGCCGACAGTGGCTTGGATCGGTTGTGGCAGA
AGAAGAAAGTAGAAGTTCGCCAACAATAG
mRNA sequenceShow/hide mRNA sequence
TTCCGATCGATCCAACTGGTTTATTTCTAGATCGAAGTAAGTTTTCAAAGCCAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGCTCTG
CGACGAACAGACTCATCACCTCCAAGGACCATGCTTCGGTTCAAATTAACATCGGTCACTTGGATGAGAATGGCATCTACACTGGCCAATTCTCCACTTTTGCTCTCTGC
GGATTCATCCGTGCTCAGGGAGATGCCGACAGTGGCTTGGATCGGTTGTGGCAGAAGAAGAAAGTAGAAGTTCGCCAACAATAGAAAATGCAAATTGGTTTTCTTCTACT
TGGAGATTAATGTCTATTTAAGGTGTTAGTTGTTACATTGCTAATTATGAATTTTGTTGAGAGCCTATCTTGGCAAACCTTTTGATGAACGCTTCTTAAATTGTTGTAGG
ATTTGTTGGAATCTTCCTTTTCTGAAGTTGGTTTTTTGATAATTTCCAGATTTATATCTTCCTTTTTCGTTTATTAATTTAGGACTTTTGTCTTTAGTTCTTTGTTTTAT
TTCCTATTTCATTTTCTCAATCATTTACATATAGCTTTGATAGATTTGGTTT
Protein sequenceShow/hide protein sequence
MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ