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Sed0025569 (gene) of Chayote v1 genome

Gene IDSed0025569
OrganismSechium edule (Chayote v1)
DescriptionHistone H2A
Genome locationLG09:36046846..36050779
RNA-Seq ExpressionSed0025569
SyntenySed0025569
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
A2YMC5 Probable histone H2A.12.3e-0444.62Show/hide
Query:  GDAARDNKKTRIVPR---------TTFSSEQRGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSD
        G+AARDNKKTRIVPR            +    GA      V+PNI ++LLPK+A S KA+    D
Subjt:  GDAARDNKKTRIVPR---------TTFSSEQRGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSD
A2ZK26 Probable histone H2A.87.9e-0546.15Show/hide
Query:  GDAARDNKKTRIVPR---------TTFSSEQRGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSD
        G+AARDNKKTRIVPR            +    GA      V+PNI ++LLPK+A S KA+ A  D
Subjt:  GDAARDNKKTRIVPR---------TTFSSEQRGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSD
A2ZK29 Probable histone H2A.77.9e-0546.15Show/hide
Query:  GDAARDNKKTRIVPR---------TTFSSEQRGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSD
        G+AARDNKKTRIVPR            +    GA      V+PNI ++LLPK+A S KA+ A  D
Subjt:  GDAARDNKKTRIVPR---------TTFSSEQRGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSD
Q2QS71 Probable histone H2A.77.9e-0546.15Show/hide
Query:  GDAARDNKKTRIVPR---------TTFSSEQRGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSD
        G+AARDNKKTRIVPR            +    GA      V+PNI ++LLPK+A S KA+ A  D
Subjt:  GDAARDNKKTRIVPR---------TTFSSEQRGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSD
Q6ZL43 Probable histone H2A.12.3e-0444.62Show/hide
Query:  GDAARDNKKTRIVPR---------TTFSSEQRGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSD
        G+AARDNKKTRIVPR            +    GA      V+PNI ++LLPK+A S KA+    D
Subjt:  GDAARDNKKTRIVPR---------TTFSSEQRGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSD
Arabidopsis top hitse value%identityAlignment
AT5G02560.1 histone H2A 121.8e-0436.99Show/hide
Query:  GDAARDNKKTRIVPRTTFSSEQ---------RGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSDLSPKSSKS
        G+AARDNKK RI+PR    + +         +G       VLPNI+  LLPK++E   +   T     K++KS
Subjt:  GDAARDNKKTRIVPRTTFSSEQ---------RGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSDLSPKSSKS
AT5G02560.2 histone H2A 121.8e-0436.99Show/hide
Query:  GDAARDNKKTRIVPRTTFSSEQ---------RGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSDLSPKSSKS
        G+AARDNKK RI+PR    + +         +G       VLPNI+  LLPK++E   +   T     K++KS
Subjt:  GDAARDNKKTRIVPRTTFSSEQ---------RGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSDLSPKSSKS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGATGCCGCTAGAGACAACAAGAAGACTCGCATTGTTCCGAGGACAACTTTCAGTTCGGAACAACGAGGAGCCGTGCAAGTTTTTGCAGTAGTGTTGCCGAATAT
CGATAAAAATCTCTTGCCTAAGAGGGCCGAATCAGGCAAAGCTGCAAAGGCGACATCGGATCTGTCTCCCAAGAGTTCTAAAAGTTTTGCTCATCAACAAGTTATGATAC
ACAAGCAGAACGGTGTCGCCACCGTCCCTCCCACGTTCACCGCCGACGCCGCAGCCGCCGTCGTCTTTATTCATTTCGTAGCGTCAGAAACTCCTTCTTGCTGTTTTGTG
TTACTGATAGTTGGAAAGGATCTGGGTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGATGCCGCTAGAGACAACAAGAAGACTCGCATTGTTCCGAGGACAACTTTCAGTTCGGAACAACGAGGAGCCGTGCAAGTTTTTGCAGTAGTGTTGCCGAATAT
CGATAAAAATCTCTTGCCTAAGAGGGCCGAATCAGGCAAAGCTGCAAAGGCGACATCGGATCTGTCTCCCAAGAGTTCTAAAAGTTTTGCTCATCAACAAGTTATGATAC
ACAAGCAGAACGGTGTCGCCACCGTCCCTCCCACGTTCACCGCCGACGCCGCAGCCGCCGTCGTCTTTATTCATTTCGTAGCGTCAGAAACTCCTTCTTGCTGTTTTGTG
TTACTGATAGTTGGAAAGGATCTGGGTTTTTGA
Protein sequenceShow/hide protein sequence
MGDAARDNKKTRIVPRTTFSSEQRGAVQVFAVVLPNIDKNLLPKRAESGKAAKATSDLSPKSSKSFAHQQVMIHKQNGVATVPPTFTADAAAAVVFIHFVASETPSCCFV
LLIVGKDLGF