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Sed0025608 (gene) of Chayote v1 genome

Gene IDSed0025608
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L6, putative
Genome locationLG14:20652708..20654952
RNA-Seq ExpressionSed0025608
SyntenySed0025608
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000702 - Ribosomal protein L6
IPR002358 - Ribosomal protein L6, conserved site
IPR019906 - Ribosomal protein L6, bacterial-type
IPR020040 - Ribosomal protein L6, alpha-beta domain
IPR036789 - Ribosomal protein L6, alpha-beta domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1212227.1 60S ribosomal protein L6, mitochondrial [Morella rubra]5.6e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEA GRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQ+VHQFAAAVRSCKPPEVYKGKGIMY+DEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

KAB8994308.1 hypothetical protein FH972_026898 [Carpinus fangiana]7.3e-4996.08Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTG+DKQ+VHQFAA VRSCKPPEVYKGKGIMY+DEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

XP_004143514.1 uncharacterized protein LOC101220210 [Cucumis sativus]7.3e-4996.08Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQ+VHQFAAAVRSCKPPEVYKGKGIMY+DEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

XP_021593538.1 uncharacterized protein LOC110600918 [Manihot esculenta]9.5e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEA GRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQ+VHQFAA+VRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

XP_022950399.1 uncharacterized protein LOC111453510 [Cucurbita moschata]2.5e-4998.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQ+VHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

TrEMBL top hitse value%identityAlignment
A0A0A0KJ40 Ribosomal_L6 domain-containing protein3.5e-4996.08Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQ+VHQFAAAVRSCKPPEVYKGKGIMY+DEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A5N6L5L9 Ribosomal_L6 domain-containing protein3.5e-4996.08Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTG+DKQ+VHQFAA VRSCKPPEVYKGKGIMY+DEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6A1VJY5 60S ribosomal protein L6, mitochondrial2.7e-4997.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEA GRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQ+VHQFAAAVRSCKPPEVYKGKGIMY+DEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1GFP3 uncharacterized protein LOC1114535101.2e-4998.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQ+VHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1IQJ4 uncharacterized protein LOC1114785181.2e-4998.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQ+VHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

SwissProt top hitse value%identityAlignment
O21255 60S ribosomal protein L6, mitochondrial4.1e-1845.83Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        + + +++VGVGYK  A+   + L LK+G+S E+   +P  ++V C ++N++  +GIDKQKV+Q AA +R  + PE YKGKGI Y+ EVI+ K+GKK
Subjt:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

P26861 60S ribosomal protein L6, mitochondrial9.6e-3670Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFF FL+I+GVGYKA   A G +L+LKLG+SHE+ L V P+VRVFC K N++CCTG+D QKV QFAA V+SCKPPEVYKGKGI Y +E+I KKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

P82193 50S ribosomal protein L6, chloroplastic1.1e-1847.96Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        F + L++VGVGY+A  E  G+ L L LG+SH V + +P  ++V   +N  V  +G DK  V QFAA +RS +PPE YKGKG+ Y+DEV+++K+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

Q2JQN4 50S ribosomal protein L61.1e-1847.96Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        F R L++VGVGY  RA   G  L L +GYSH VE+  PP +++    NNV+  +GIDK+ V   AA +R+ +PPE YKGKGI Y+ E +++K GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

Q38US6 50S ribosomal protein L61.4e-1848.98Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        F + L ++GVGY  RA+  G+ L L +GYSH VE+  P  V V    N  +  +GI KQKV QFAA +R  +PPE YKGKGI Y DE +++K+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

Arabidopsis top hitse value%identityAlignment
AT1G05190.1 Ribosomal protein L6 family1.4e-1843.88Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        F + L +VGVGY+A  +  G+ L L LG+SH V++ +P +++V   +N  +  +G DK ++ QFAA VR  +PPE YKGKG+ Y DE++++K+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

AT2G18400.1 ribosomal protein L6 family protein7.0e-5091.18Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAE AGR L+LKLGYSHEVEL VPPAVRVFCFKNNVVCCTGIDKQ+VHQFAA VRSCKPPE YKGKGIMY DEV+KKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCTAAGTTTTTTCGCTTCCTCAAGATTGTGGGAGTTGGTTACAAAGCCAGAGCAGAAGCAGCAGGACGTCTTTTGTTTCTTAAACTCGGATATAGCCACGAAGT
CGAATTAACCGTTCCTCCAGCGGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTCTGCTGCACAGGGATTGACAAACAGAAGGTACACCAATTTGCTGCTGCAGTTCGTA
GCTGTAAGCCGCCCGAAGTGTACAAAGGCAAGGGCATAATGTATATCGACGAAGTCATAAAAAAGAAGCAAGGAAAGAAGTCGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATTTTTCTAAAATGTAAACAAAAAACCCTAACTTCTCTGCACAGCCGCCCCCCCCCCTTTTTTTACTCACACATCTCTTTCTCTGCTGCTCTGTTTTTTTTTTTTTTTTT
TTGTCAAAATCTCTGTATTCATCTTCGACGACTCTTAGATAGTAAAAAAGGTGAGCAAGCGCAGTTGATTTAACTCCAATGGAGGCTAAGTTTTTTCGCTTCCTCAAGAT
TGTGGGAGTTGGTTACAAAGCCAGAGCAGAAGCAGCAGGACGTCTTTTGTTTCTTAAACTCGGATATAGCCACGAAGTCGAATTAACCGTTCCTCCAGCGGTTCGTGTCT
TTTGCTTCAAAAACAATGTGGTCTGCTGCACAGGGATTGACAAACAGAAGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCGCCCGAAGTGTACAAAGGCAAG
GGCATAATGTATATCGACGAAGTCATAAAAAAGAAGCAAGGAAAGAAGTCGAAATAAATTTTCTTGGAGCTCATAACTGTTGCAGAATGCCTCAAATTGATCTGTTATTC
AGACACGAAAGTGCCTCAATTAAAAATAATTGGATTTTGTTGTATGCATATTTAGAAATTTGATAGCAGATAGCTCCATCATATTGGTTACTTGATGGTTGTTTTTTTGC
TTCAATGCCTATTCTTGAAACAATATCCCCTTGATCCAATATTGTGTAGAAGTTGGAATTCTGTGGAAGAATCCATTTAAAGTTGAGGCTTAGCTCTTGCCTGTTTTTTT
ATTATGAATTGTAACATTTTCCATAATTAACATCTAATCCCTCTTTTTCCTCAAGAAGAAGCTT
Protein sequenceShow/hide protein sequence
MEAKFFRFLKIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQKVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK