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Sed0025624 (gene) of Chayote v1 genome

Gene IDSed0025624
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationLG11:15171544..15178215
RNA-Seq ExpressionSed0025624
SyntenySed0025624
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022932792.1 uncharacterized protein LOC111439252 [Cucurbita moschata]1.3e-1145.79Show/hide
Query:  EDSHTHLREFISEHTQFPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECSKMDTLDKIVDQ-RIMEFA
        ED    + +FI     FP   ++  +   +DVPIILGRPFLKTGRTLVD Y+GTITLRM +++ +F I +SMK  A +EECS    + K+ +Q    E+ 
Subjt:  EDSHTHLREFISEHTQFPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECSKMDTLDKIVDQ-RIMEFA

Query:  SAKEESE
          K E E
Subjt:  SAKEESE

XP_022951570.1 uncharacterized protein LOC111454344 [Cucurbita moschata]2.2e-1159.09Show/hide
Query:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECS
        FP   ++  +   +DVPIILGRPFLKTGRTLVD Y+GTITLRM  ++ +F I +SMK  A  EECS
Subjt:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECS

XP_023521407.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp. pepo]1.0e-1159.09Show/hide
Query:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECS
        FP   ++  +   +DVPIILGRPFLKTGRTLVD Y+GTITLRM  ++ +F I +SMK  A +EECS
Subjt:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECS

XP_023521781.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785639, partial [Cucurbita pepo subsp. pepo]2.9e-1157.58Show/hide
Query:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECS
        FP   ++  +   +DVPIILGRPFLKTGRTLVD Y+GTITLRM  ++ +F I +SMK  A ++ECS
Subjt:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECS

XP_023522102.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785979 [Cucurbita pepo subsp. pepo]1.0e-1159.09Show/hide
Query:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECS
        FP   ++  +   +DVPIILGRPFLKTGRTLVD Y+GTITLRM  ++ +F I +SMK  A +EECS
Subjt:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECS

TrEMBL top hitse value%identityAlignment
A0A5B6VQI7 Uncharacterized protein9.2e-1139.29Show/hide
Query:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECSKMDTLDKIVDQRIMEFAS
        FP   V+     + +VPIILGRPFL TGRTL+D  +G +T+R+N ++  F ++++MKC+ ++E+C  +  LD  V++    F +
Subjt:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECSKMDTLDKIVDQRIMEFAS

A0A6J1CS22 uncharacterized protein LOC1110138051.9e-1147.06Show/hide
Query:  EHTQFPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECSKMDTLDKIVDQRIME
        E   FP   ++  +    +VPIILGRPFL TGR LVD  +G +T+ +  +E KF ++NSMK SA+SEECS +    KI+D+ +ME
Subjt:  EHTQFPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECSKMDTLDKIVDQRIME

A0A6J1EXR9 uncharacterized protein LOC1114392526.4e-1245.79Show/hide
Query:  EDSHTHLREFISEHTQFPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECSKMDTLDKIVDQ-RIMEFA
        ED    + +FI     FP   ++  +   +DVPIILGRPFLKTGRTLVD Y+GTITLRM +++ +F I +SMK  A +EECS    + K+ +Q    E+ 
Subjt:  EDSHTHLREFISEHTQFPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECSKMDTLDKIVDQ-RIMEFA

Query:  SAKEESE
          K E E
Subjt:  SAKEESE

A0A6J1GJ68 uncharacterized protein LOC1114543441.1e-1159.09Show/hide
Query:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECS
        FP   ++  +   +DVPIILGRPFLKTGRTLVD Y+GTITLRM  ++ +F I +SMK  A  EECS
Subjt:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECS

A0A6P4QAN2 uncharacterized protein LOC1084881601.4e-1140.51Show/hide
Query:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECSKMDTLDKIVDQRI
        FP   ++  +    DVPIILGRPFL TGRT++D  +G +T+R+N ++  F ++ S+KC+   EEC  + +LD +V++++
Subjt:  FPFQLVVDTWGRHYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECSKMDTLDKIVDQRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACGACCTAGGGCGGTGGGGCTCTGGGGTGAGGCGAGGCGACAGCGCCGCGAGGCTAAAGCTGCTCGGGTGGGCTTGGGCGACAGGGGCGAGCTCAGATGCCTCCA
CACCCTCTCCGGGCAACACAGCAGAAGGGCATGTAGGTGGCCTAACATCTGCTTCAGCTTGGGACGACCATTTGAAGTCAAGCTAATGATGAATACGCTGTTACAGCAAA
AAGCACAATTTCATGGGTTACCGAACGAAGACTCGCACACTCACTTGAGGGAATTCATAAGTGAGCATACACAATTCCCATTTCAATTGGTGGTAGACACGTGGGGAAGG
CACTATGATGTCCCCATTATTTTGGGTCGACCATTTCTGAAGACGGGGCGTACACTTGTGGACACTTACGAGGGAACCATCACGTTGCGAATGAACAGCGAAGAGAGAAA
GTTCAAAATCTACAATTCGATGAAGTGCTCTGCTCAAAGCGAAGAGTGTTCTAAGATGGACACCTTAGACAAAATAGTAGACCAACGTATAATGGAATTCGCTTCAGCAA
AGGAGGAGAGCGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACGACCTAGGGCGGTGGGGCTCTGGGGTGAGGCGAGGCGACAGCGCCGCGAGGCTAAAGCTGCTCGGGTGGGCTTGGGCGACAGGGGCGAGCTCAGATGCCTCCA
CACCCTCTCCGGGCAACACAGCAGAAGGGCATGTAGGTGGCCTAACATCTGCTTCAGCTTGGGACGACCATTTGAAGTCAAGCTAATGATGAATACGCTGTTACAGCAAA
AAGCACAATTTCATGGGTTACCGAACGAAGACTCGCACACTCACTTGAGGGAATTCATAAGTGAGCATACACAATTCCCATTTCAATTGGTGGTAGACACGTGGGGAAGG
CACTATGATGTCCCCATTATTTTGGGTCGACCATTTCTGAAGACGGGGCGTACACTTGTGGACACTTACGAGGGAACCATCACGTTGCGAATGAACAGCGAAGAGAGAAA
GTTCAAAATCTACAATTCGATGAAGTGCTCTGCTCAAAGCGAAGAGTGTTCTAAGATGGACACCTTAGACAAAATAGTAGACCAACGTATAATGGAATTCGCTTCAGCAA
AGGAGGAGAGCGAATAA
Protein sequenceShow/hide protein sequence
MARPRAVGLWGEARRQRREAKAARVGLGDRGELRCLHTLSGQHSRRACRWPNICFSLGRPFEVKLMMNTLLQQKAQFHGLPNEDSHTHLREFISEHTQFPFQLVVDTWGR
HYDVPIILGRPFLKTGRTLVDTYEGTITLRMNSEERKFKIYNSMKCSAQSEECSKMDTLDKIVDQRIMEFASAKEESE