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Sed0025640 (gene) of Chayote v1 genome

Gene IDSed0025640
OrganismSechium edule (Chayote v1)
DescriptionReplication protein A 32 kDa subunit B
Genome locationLG12:32551870..32552400
RNA-Seq ExpressionSed0025640
SyntenySed0025640
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058272.1 hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa]6.5e-4565.45Show/hide
Query:  AKDHHLH-LSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPES----GDEKTTRTIPKPEPVKTWF
        AKDH LH LSEKPFSLLQ N+ FV+KILSRNS+ GRSARLPAC LPG+IPF+WE +PGLPK+ PSE  PPA++PP S    G  KT   +PK  PVK WF
Subjt:  AKDHHLH-LSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPES----GDEKTTRTIPKPEPVKTWF

Query:  WKKPKRKA--VVKKNGSFGS----RRHVVVDCESEVC-RKSNDESSSSSSR--VSSSLSS-SSSGSSSNGY-GRRRSKLGSLAKGFMKWAF
        W K +RK+   VKKNG+ GS    RRH  VD ESE C RKSNDES SSSS   +S SLSS SSS SSS+ Y  RRRSKLGSLAK F++WAF
Subjt:  WKKPKRKA--VVKKNGSFGS----RRHVVVDCESEVC-RKSNDESSSSSSR--VSSSLSS-SSSGSSSNGY-GRRRSKLGSLAKGFMKWAF

KAG6589705.1 Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]3.8e-4566.3Show/hide
Query:  MAKDHHLHLSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPE-SGDEKTTRTIP-KPEPVKTWFWK
        M  +H LHLSE PFSLLQ NELFV+KILSRNS++GRSARLPACRLPG+IPF WEA+PGLPKD PSE L P   P    G  KT   +P + E  K WFW 
Subjt:  MAKDHHLHLSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPE-SGDEKTTRTIP-KPEPVKTWFWK

Query:  KPKRKA--VVKKNGSFG----SRRHVVVDCESEVCRKSNDESSSSSSRVSSSLSSSSSGSSSNGYGRRRSKLGSLAKGFMK
        KP++K   VVKKNG+FG    SRRH  V+ ESE  RKSNDESSSS S +S SLSSSS  SSSNGY RRRSKL SLAKGF++
Subjt:  KPKRKA--VVKKNGSFG----SRRHVVVDCESEVCRKSNDESSSSSSRVSSSLSSSSSGSSSNGYGRRRSKLGSLAKGFMK

KGN65459.1 hypothetical protein Csa_020126 [Cucumis sativus]5.5e-4464.21Show/hide
Query:  AKDHHLH-LSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPES----GDEKTTRTIPKPEPVKTWF
        AKDH LH LSEKPFSLLQ N+LFV+KILSRNS+ GRSARLPAC LPG++PF+WEA+PGLPK+ PS+  PP K+PP S    G  KT   +PK  PVK WF
Subjt:  AKDHHLH-LSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPES----GDEKTTRTIPKPEPVKTWF

Query:  WKKPKRKA--VVKKNGSFGS---RRHVVVDCESEVCR-KSNDESSSSSSR--VSSSLSS-SSSGSSSNGY-GRRRSKLGSLAKGFMKWAF
        W K +RK+   VKK+G+ GS   RRH  VD +SE CR KSNDESSSSSS   +S S+SS SSS SSS+ Y  RRR KLGSLAK F++WAF
Subjt:  WKKPKRKA--VVKKNGSFGS---RRHVVVDCESEVCR-KSNDESSSSSSR--VSSSLSS-SSSGSSSNGY-GRRRSKLGSLAKGFMKWAF

TYK11824.1 hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa]4.2e-4464.92Show/hide
Query:  AKDHHLH-LSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPES----GDEKTTRTIPKPEPVKTWF
        AKDH LH LSEKPFSLLQ N+ FV+KILSRNS+ GRSARLPAC LPG+IPF+WE +PGLPK+ PSE  PPA++PP S    G  KT   +PK  PVK WF
Subjt:  AKDHHLH-LSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPES----GDEKTTRTIPKPEPVKTWF

Query:  WKKPKRKA--VVKKNGSFGS----RRHVVVDCESEVC-RKSNDESSSSSSR--VSSSLSS-SSSGSSSNGY-GRRRSKLGSLAKGFMKWAF
        W K +RK+   VKKNG+ GS    RRH  VD ESE C RKSND S SSSS   +S SLSS SSS SSS+ Y  RRRSKLGSLAK F++WAF
Subjt:  WKKPKRKA--VVKKNGSFGS----RRHVVVDCESEVC-RKSNDESSSSSSR--VSSSLSS-SSSGSSSNGY-GRRRSKLGSLAKGFMKWAF

XP_022987494.1 uncharacterized protein LOC111485037 [Cucurbita maxima]5.0e-4564.89Show/hide
Query:  MAKDHHLHLSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPE--SGDEKTTRTIPK-PEPVKTWFW
        M  DH LH SE PFSLLQ NELFV+KILSRNS++GRSARLPACRLPG+IPF WEA+PGLPKD PSE L P   PP    G  KT   +PK  E  K W W
Subjt:  MAKDHHLHLSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPE--SGDEKTTRTIPK-PEPVKTWFW

Query:  KKPKRKA--VVKKNGSFG----SRRHVVVDCESEVCRKSNDESSSSSSRVSSSL---SSSSSGSSSNGYGRRRSKLGSLAKGFMKWAF
         KP++K   VVKKNG+FG    SR H  V+ ESE CRKSNDESSSS++  S S    S SSS SSSNGY RRRSKL SLAKGF++WAF
Subjt:  KKPKRKA--VVKKNGSFG----SRRHVVVDCESEVCRKSNDESSSSSSRVSSSL---SSSSSGSSSNGYGRRRSKLGSLAKGFMKWAF

TrEMBL top hitse value%identityAlignment
A0A0A0LWV3 Uncharacterized protein2.7e-4464.21Show/hide
Query:  AKDHHLH-LSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPES----GDEKTTRTIPKPEPVKTWF
        AKDH LH LSEKPFSLLQ N+LFV+KILSRNS+ GRSARLPAC LPG++PF+WEA+PGLPK+ PS+  PP K+PP S    G  KT   +PK  PVK WF
Subjt:  AKDHHLH-LSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPES----GDEKTTRTIPKPEPVKTWF

Query:  WKKPKRKA--VVKKNGSFGS---RRHVVVDCESEVCR-KSNDESSSSSSR--VSSSLSS-SSSGSSSNGY-GRRRSKLGSLAKGFMKWAF
        W K +RK+   VKK+G+ GS   RRH  VD +SE CR KSNDESSSSSS   +S S+SS SSS SSS+ Y  RRR KLGSLAK F++WAF
Subjt:  WKKPKRKA--VVKKNGSFGS---RRHVVVDCESEVCR-KSNDESSSSSSR--VSSSLSS-SSSGSSSNGY-GRRRSKLGSLAKGFMKWAF

A0A1R3HJ38 Uncharacterized protein1.1e-0836.88Show/hide
Query:  KPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCP-----SEILPPAKIPPESGDEKTTRTIPKPEPVKTWFWKKPK-----
        K  S LQ +ELF+ KIL+R S++  SA +P  R  G +PF WE++PG P+         EI+PP + PP S         P     + WFWKK K     
Subjt:  KPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCP-----SEILPPAKIPPESGDEKTTRTIPKPEPVKTWFWKKPK-----

Query:  --RKAVVKKNGSFGSRRHVVVDCESEVCRKSNDESSSSSSR
          +KA  K  G+F    H     +      +N  SSSSSSR
Subjt:  --RKAVVKKNGSFGSRRHVVVDCESEVCRKSNDESSSSSSR

A0A5A7UQX0 Uncharacterized protein3.1e-4565.45Show/hide
Query:  AKDHHLH-LSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPES----GDEKTTRTIPKPEPVKTWF
        AKDH LH LSEKPFSLLQ N+ FV+KILSRNS+ GRSARLPAC LPG+IPF+WE +PGLPK+ PSE  PPA++PP S    G  KT   +PK  PVK WF
Subjt:  AKDHHLH-LSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPES----GDEKTTRTIPKPEPVKTWF

Query:  WKKPKRKA--VVKKNGSFGS----RRHVVVDCESEVC-RKSNDESSSSSSR--VSSSLSS-SSSGSSSNGY-GRRRSKLGSLAKGFMKWAF
        W K +RK+   VKKNG+ GS    RRH  VD ESE C RKSNDES SSSS   +S SLSS SSS SSS+ Y  RRRSKLGSLAK F++WAF
Subjt:  WKKPKRKA--VVKKNGSFGS----RRHVVVDCESEVC-RKSNDESSSSSSR--VSSSLSS-SSSGSSSNGY-GRRRSKLGSLAKGFMKWAF

A0A5D3CKX4 Uncharacterized protein2.0e-4464.92Show/hide
Query:  AKDHHLH-LSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPES----GDEKTTRTIPKPEPVKTWF
        AKDH LH LSEKPFSLLQ N+ FV+KILSRNS+ GRSARLPAC LPG+IPF+WE +PGLPK+ PSE  PPA++PP S    G  KT   +PK  PVK WF
Subjt:  AKDHHLH-LSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPES----GDEKTTRTIPKPEPVKTWF

Query:  WKKPKRKA--VVKKNGSFGS----RRHVVVDCESEVC-RKSNDESSSSSSR--VSSSLSS-SSSGSSSNGY-GRRRSKLGSLAKGFMKWAF
        W K +RK+   VKKNG+ GS    RRH  VD ESE C RKSND S SSSS   +S SLSS SSS SSS+ Y  RRRSKLGSLAK F++WAF
Subjt:  WKKPKRKA--VVKKNGSFGS----RRHVVVDCESEVC-RKSNDESSSSSSR--VSSSLSS-SSSGSSSNGY-GRRRSKLGSLAKGFMKWAF

A0A6J1JJ17 uncharacterized protein LOC1114850372.4e-4564.89Show/hide
Query:  MAKDHHLHLSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPE--SGDEKTTRTIPK-PEPVKTWFW
        M  DH LH SE PFSLLQ NELFV+KILSRNS++GRSARLPACRLPG+IPF WEA+PGLPKD PSE L P   PP    G  KT   +PK  E  K W W
Subjt:  MAKDHHLHLSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPE--SGDEKTTRTIPK-PEPVKTWFW

Query:  KKPKRKA--VVKKNGSFG----SRRHVVVDCESEVCRKSNDESSSSSSRVSSSL---SSSSSGSSSNGYGRRRSKLGSLAKGFMKWAF
         KP++K   VVKKNG+FG    SR H  V+ ESE CRKSNDESSSS++  S S    S SSS SSSNGY RRRSKL SLAKGF++WAF
Subjt:  KKPKRKA--VVKKNGSFG----SRRHVVVDCESEVCRKSNDESSSSSSRVSSSL---SSSSSGSSSNGYGRRRSKLGSLAKGFMKWAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAAGATCATCATCTTCATCTCTCTGAAAAACCCTTTTCATTACTCCAAACAAATGAGTTATTCGTCAACAAAATCCTCTCAAGAAACTCCACACTCGGCCGCTC
TGCCCGTCTCCCCGCCTGCCGCCTGCCCGGCCGAATCCCATTCCATTGGGAAGCCGAACCCGGCCTGCCCAAAGACTGCCCGTCGGAAATTCTCCCGCCGGCCAAAATTC
CACCGGAATCCGGCGACGAGAAAACCACACGGACAATCCCCAAGCCGGAGCCGGTTAAGACGTGGTTTTGGAAAAAACCGAAGAGAAAAGCCGTGGTTAAGAAAAACGGT
TCGTTTGGATCGAGACGACATGTCGTCGTGGACTGTGAGAGTGAGGTTTGTAGAAAATCCAACGACGAGTCGTCTTCGTCGTCGTCTCGTGTTTCTTCTTCTTTGTCTTC
TAGTTCTTCTGGTTCGTCTTCAAATGGCTATGGCCGACGCCGGTCCAAACTTGGTAGCCTGGCTAAAGGGTTCATGAAATGGGCCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAAGATCATCATCTTCATCTCTCTGAAAAACCCTTTTCATTACTCCAAACAAATGAGTTATTCGTCAACAAAATCCTCTCAAGAAACTCCACACTCGGCCGCTC
TGCCCGTCTCCCCGCCTGCCGCCTGCCCGGCCGAATCCCATTCCATTGGGAAGCCGAACCCGGCCTGCCCAAAGACTGCCCGTCGGAAATTCTCCCGCCGGCCAAAATTC
CACCGGAATCCGGCGACGAGAAAACCACACGGACAATCCCCAAGCCGGAGCCGGTTAAGACGTGGTTTTGGAAAAAACCGAAGAGAAAAGCCGTGGTTAAGAAAAACGGT
TCGTTTGGATCGAGACGACATGTCGTCGTGGACTGTGAGAGTGAGGTTTGTAGAAAATCCAACGACGAGTCGTCTTCGTCGTCGTCTCGTGTTTCTTCTTCTTTGTCTTC
TAGTTCTTCTGGTTCGTCTTCAAATGGCTATGGCCGACGCCGGTCCAAACTTGGTAGCCTGGCTAAAGGGTTCATGAAATGGGCCTTTTGA
Protein sequenceShow/hide protein sequence
MAKDHHLHLSEKPFSLLQTNELFVNKILSRNSTLGRSARLPACRLPGRIPFHWEAEPGLPKDCPSEILPPAKIPPESGDEKTTRTIPKPEPVKTWFWKKPKRKAVVKKNG
SFGSRRHVVVDCESEVCRKSNDESSSSSSRVSSSLSSSSSGSSSNGYGRRRSKLGSLAKGFMKWAF