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Sed0025673 (gene) of Chayote v1 genome

Gene IDSed0025673
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG01:71234396..71236650
RNA-Seq ExpressionSed0025673
SyntenySed0025673
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060208.1 Integrase, catalytic core [Cucumis melo var. makuwa]5.5e-1968.29Show/hide
Query:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL
        MT EVA Q+MGF  A DL EAIQDLF VQ+R EED+LR  FQ TRK   KM DYLRIMK +A+NL QAGSP+  RSLISQ L
Subjt:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL

XP_022148963.1 uncharacterized protein LOC111017501 [Momordica charantia]3.3e-2474.39Show/hide
Query:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL
        MTPEVA QVMG+  A DLW AIQ+LF VQ++AEEDYLRQ+FQQTRK   KM D+LR+MK HADNL QAGSPV TRSLISQ L
Subjt:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL

XP_038896600.1 uncharacterized protein LOC120084860 [Benincasa hispida]1.5e-1963.41Show/hide
Query:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL
        M  +VA Q+MG+  A +LW+AIQ+LF VQ+RAEEDYLRQ+FQQTRK   KM  YL++MK H+DNL Q  SPV+TR+LISQ L
Subjt:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL

XP_038902487.1 uncharacterized protein LOC120089143 [Benincasa hispida]2.5e-1963.41Show/hide
Query:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL
        MT EVA QVMG+     LW AIQ+LF +Q+RA EDYLRQ+FQQT K   KMP+YLR+MK H+DNL   GSPV TR+L+SQ L
Subjt:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL

XP_038904321.1 uncharacterized protein LOC120090675 [Benincasa hispida]7.2e-1964.63Show/hide
Query:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL
        MTP++A QVMGF  A DLW  IQ LF +Q+RAEEDYLR +FQ TRK   KM DYLR MK + DNLEQAGSPV  R+L+ Q L
Subjt:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL

TrEMBL top hitse value%identityAlignment
A0A0A0K3F9 Uncharacterized protein4.6e-1965.85Show/hide
Query:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL
        MTPEVA Q+MGF  A DLWEAIQDLF VQ RAEED+LR  FQ T+K   KM DYL  MK + DNL+QAGS V   SLISQ +
Subjt:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL

A0A0A0LFV1 Uncharacterized protein1.0e-1849.58Show/hide
Query:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCLAPNGRIIISRNVI-FNEA
        M P+V  Q MGF    DLW+ IQDLF VQ+R EED+L Q F  TRK+ + M DYLRIMK + DNL QAGSPV  RS ISQ       +II R +I  N  
Subjt:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCLAPNGRIIISRNVI-FNEA

Query:  EFPFAKLFGAPTTQPLSLG
        E    K+  A  T  +++G
Subjt:  EFPFAKLFGAPTTQPLSLG

A0A5A7UY76 Integrase, catalytic core2.7e-1968.29Show/hide
Query:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL
        MT EVA Q+MGF  A DL EAIQDLF VQ+R EED+LR  FQ TRK   KM DYLRIMK +A+NL QAGSP+  RSLISQ L
Subjt:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL

A0A5D3E3L7 Uncharacterized protein1.0e-1864.63Show/hide
Query:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL
        M P+VA Q+MGF  A DLWEAIQ+LF +++RAEE +LR  FQ TR+  +KM DYLRIMK +ADNL QAGSPV  R LISQ L
Subjt:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL

A0A6J1D5J0 uncharacterized protein LOC1110175011.6e-2474.39Show/hide
Query:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL
        MTPEVA QVMG+  A DLW AIQ+LF VQ++AEEDYLRQ+FQQTRK   KM D+LR+MK HADNL QAGSPV TRSLISQ L
Subjt:  MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACCAGAAGTTGCTCAGCAGGTAATGGGATTCTACAAAGCAAATGATCTGTGGGAAGCAATTCAGGACCTGTTTGATGTTCAAGCTAGAGCAGAGGAAGATTATCT
GCGCCAAATCTTTCAGCAGACACGCAAGAATGTTCACAAAATGCCTGATTATCTAAGAATCATGAAAGGACATGCAGATAATCTAGAGCAAGCTGGAAGTCCTGTTACAA
CGAGGTCACTGATCTCACAATGCCTGGCCCCAAATGGACGCATCATCATCTCCCGAAATGTCATATTTAACGAAGCTGAATTTCCCTTTGCCAAACTGTTTGGTGCTCCA
ACCACTCAACCTCTTTCACTTGGCTCAAACCCAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACACCAGAAGTTGCTCAGCAGGTAATGGGATTCTACAAAGCAAATGATCTGTGGGAAGCAATTCAGGACCTGTTTGATGTTCAAGCTAGAGCAGAGGAAGATTATCT
GCGCCAAATCTTTCAGCAGACACGCAAGAATGTTCACAAAATGCCTGATTATCTAAGAATCATGAAAGGACATGCAGATAATCTAGAGCAAGCTGGAAGTCCTGTTACAA
CGAGGTCACTGATCTCACAATGCCTGGCCCCAAATGGACGCATCATCATCTCCCGAAATGTCATATTTAACGAAGCTGAATTTCCCTTTGCCAAACTGTTTGGTGCTCCA
ACCACTCAACCTCTTTCACTTGGCTCAAACCCAAATTGA
Protein sequenceShow/hide protein sequence
MTPEVAQQVMGFYKANDLWEAIQDLFDVQARAEEDYLRQIFQQTRKNVHKMPDYLRIMKGHADNLEQAGSPVTTRSLISQCLAPNGRIIISRNVIFNEAEFPFAKLFGAP
TTQPLSLGSNPN