CuGenDBv2

Gene ID	Sed0025728
Organism	Sechium edule (Chayote v1)
Description	RING-H2 zinc finger protein
Genome location	LG01:63455072..63456651
RNA-Seq Expression	Sed0025728
Synteny	Sed0025728
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579291.1 hypothetical protein SDJN03_23739, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-80

72.25

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Query:  NPFPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPH
        +PF SP+SL++WL+PRLPSDSF+SWGV P TKNVHNLW+ELS+GE SL+DS PPIRT+QVLSLRI+D N  R+LLESHQQLSDG+ R+RNRPLSEKMKP+
Subjt:  NPFPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPH

Query:  ETLESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWK
        ET ESAVYRAV+EELGS+LG SDCS++V IVPDSY++ +E+R S SYPGLP  YVLH +DV V+GLP+ +FCTVEE      EE  IA EAV+VKKHFWK
Subjt:  ETLESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWK

Query:  WVSLDSVDF
        WVSLDS+DF
Subjt:  WVSLDSVDF

XP_022922297.1 uncharacterized protein LOC111430319 [Cucurbita moschata]

1.1e-80

72.25

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Query:  NPFPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPH
        +PF SP+SL++WL+PRLPSDSF+SWGV P TKNVHNLW+ELS+GE SL+DS PPIRT+QVLSLRI+D N  R+LLESHQQLSDG+ R+RNRPLSEKMKP+
Subjt:  NPFPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPH

Query:  ETLESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWK
        ET ESAVYRAV+EELGS+LG SDCS++V IVPDSY++ +E+R S SYPGLP  YVLH +DV V+GLP+ +FCTVEE      EE  IA EAV+VKKHFWK
Subjt:  ETLESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWK

Query:  WVSLDSVDF
        WVSLDS+DF
Subjt:  WVSLDSVDF

XP_022974352.1 uncharacterized protein LOC111472979 [Cucurbita maxima]

2.3e-81

72.73

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Query:  NPFPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPH
        +PF SP+SL++WL+PRLPSDSF+SWGV P TKNVHNLW+ELS+GE SL+DSTPPIRT+QVLSLRI+D N  R+LLESHQQLSDG+ R+RNRPLSEKMKP+
Subjt:  NPFPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPH

Query:  ETLESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWK
        ET ESAVYRAV+EELGS+LG SDCS++V IVPDSY++ +E+R S SYPGLP  YVLH +DV V+GLP+ +FCTVEE      EE  IA EAV+VKKHFWK
Subjt:  ETLESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWK

Query:  WVSLDSVDF
        WVSLDS+DF
Subjt:  WVSLDSVDF

XP_023550799.1 uncharacterized protein LOC111808831 [Cucurbita pepo subsp. pepo]

1.5e-80

72.25

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Query:  NPFPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPH
        +PF SP+SL++WL+PRLPSDSF+SWGV P TKNVHNLW+ELS+GE SL+DS PPIRT+QVLSLRI+D N  R+LLESHQQLSDG+ R+RNRPLSEKMKP+
Subjt:  NPFPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPH

Query:  ETLESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWK
        ET ESAVYRAV+EELGS+LG SDCS++V IVPDSY++ +E+R S SYPGLP  YVLH +DV V+GLP+ +FCTVEE      EE  IA EAV+VKKHFWK
Subjt:  ETLESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWK

Query:  WVSLDSVDF
        WVSLDS+DF
Subjt:  WVSLDSVDF

XP_038874473.1 uncharacterized protein LOC120067121 isoform X2 [Benincasa hispida]

7.3e-80

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Query:  FPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPHET
        F SP+SL+EWL+PRLPSDSF+SWGVNP TKNVHNLW+E+SQGE SL+DS PPIRTL VLSLRILD N  RVL+ESHQQLSDG+ R+RNRPLSEKMKP+ET
Subjt:  FPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPHET

Query:  LESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEEEEKG------IAVEAVTVKKHFWKWV
         ESAVYRAV+EELGS++G SDCS +V IVPDSY++ +E+R S SYPGLP  YVLH +DVWV+GLPEGEFCTVEEEE G      IA +AV+VKKHFWKWV
Subjt:  LESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEEEEKG------IAVEAVTVKKHFWKWV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJQ6 Uncharacterized protein

1.1e-78

72.95

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Query:  FPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPHET
        F SP+SL+EWLQPRLPS SF+SWGV P TKN+HNLW+E+SQGE SL+DS PPIRTL VLSLRI+D N  R+LLESHQQLSDG+ R+RNRPLSEKMKP+ET
Subjt:  FPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPHET

Query:  LESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEEEE------KGIAVEAVTVKKHFWKWV
         ESAVYRAVQEELGS+LG SD S +V IVPDSYR+ +E+R S SYPGL  SYVLH +DVWV+GLP+G+FCTVEEEE        IA  AV+VKKHFWKWV
Subjt:  LESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEEEE------KGIAVEAVTVKKHFWKWV

Query:  SLDSVDF
        S +SVDF
Subjt:  SLDSVDF

A0A1S3AUP2 uncharacterized protein LOC103483001

6.9e-76

70.39

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Query:  FPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPHET
        F SP+SL+EWLQPRLPS SF+SWGV P TKN+HNLW+E+SQGE SL+DS PPIR L VLSLRI+D N  R+LLESHQQLSDG+ R+RNRPLSEKMKP+ET
Subjt:  FPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPHET

Query:  LESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWKWV
         ESAVYRAVQEELGS+L  SDCS +V IVPDSY++ +E+R S SYPGLP  YVLH +D+ V+GLP+G+FCTVE+      EE  IA +AV+VKKHFWKWV
Subjt:  LESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWKWV

Query:  SLDSVD
        S +SVD
Subjt:  SLDSVD

A0A6J1CCN3 uncharacterized protein LOC111009508

9.0e-76

68.6

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Query:  FPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPHET
        F SP+SL++WL PRLPSDSF+SWGV P TKNVHNLW+E+S+GE SL+DS PPIRT+QV+SLRILD    RVL+ESHQ+LSDG+ R+RNRPLSEKMKP+ET
Subjt:  FPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPHET

Query:  LESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEEEEKGIAVE-------AVTVKKHFWKW
         ESAVYRAV+EELGS++G  DC ++V IVP+SY++ +E+R S SYPGLP  YVLH +DVWV+GLP+ EFCTVEEEE   + E       AV+VKKHFWKW
Subjt:  LESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEEEEKGIAVE-------AVTVKKHFWKW

Query:  VSLDSVD
        VS DSVD
Subjt:  VSLDSVD

A0A6J1E2U8 uncharacterized protein LOC111430319

5.5e-81

72.25

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Query:  NPFPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPH
        +PF SP+SL++WL+PRLPSDSF+SWGV P TKNVHNLW+ELS+GE SL+DS PPIRT+QVLSLRI+D N  R+LLESHQQLSDG+ R+RNRPLSEKMKP+
Subjt:  NPFPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPH

Query:  ETLESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWK
        ET ESAVYRAV+EELGS+LG SDCS++V IVPDSY++ +E+R S SYPGLP  YVLH +DV V+GLP+ +FCTVEE      EE  IA EAV+VKKHFWK
Subjt:  ETLESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWK

Query:  WVSLDSVDF
        WVSLDS+DF
Subjt:  WVSLDSVDF

A0A6J1IA21 uncharacterized protein LOC111472979

1.1e-81

72.73

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Query:  NPFPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPH
        +PF SP+SL++WL+PRLPSDSF+SWGV P TKNVHNLW+ELS+GE SL+DSTPPIRT+QVLSLRI+D N  R+LLESHQQLSDG+ R+RNRPLSEKMKP+
Subjt:  NPFPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPH

Query:  ETLESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWK
        ET ESAVYRAV+EELGS+LG SDCS++V IVPDSY++ +E+R S SYPGLP  YVLH +DV V+GLP+ +FCTVEE      EE  IA EAV+VKKHFWK
Subjt:  ETLESAVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEE------EEKGIAVEAVTVKKHFWK

Query:  WVSLDSVDF
        WVSLDS+DF
Subjt:  WVSLDSVDF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G24460.1 unknown protein

2.5e-62

53.36

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Query:  KSPNP------FPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNR
        +SP P      F +P+SL++WL+ RLPSDSF++WGV P TKNVHNLW+ELS GE SL+DSTPP+RT+ V+++R++  N  R+L+E+HQ+LSDGS R R R
Subjt:  KSPNP------FPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNR

Query:  PLSEKMKPHETLESAVYRAVQEELGSVLG--GSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEEEEKG---------
        PLSEKMKP E+ + AV+RA++EELGS+    G +    + I+P +Y   VE+R S SYPGLP  Y LH V+  V+GLPE +FCT E+E +G         
Subjt:  PLSEKMKPHETLESAVYRAVQEELGSVLG--GSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEEEEKG---------

Query:  --IAVEAVTVKKHFWKWVSLDSV
           A  AVTVK+H+WKWVS DS+
Subjt:  --IAVEAVTVKKHFWKWVSLDSV

Sequences

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CDS sequence

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ATGTCCAAATCCCCCAACCCCTTTCCCTCTCCTGAATCCCTCGCCGAATGGCTCCAACCCCGCCTCCCCTCCGATTCATTTTCTTCATGGGGCGTAAACCCCGCCACCAA
AAACGTCCACAATCTCTGGATCGAGCTCTCCCAAGGGGAAATTTCCCTCTCCGATTCAACCCCACCGATCCGCACCCTCCAAGTCCTTTCCCTTCGAATCCTCGACCCCA
ACCGAACCCGGGTTCTCCTCGAATCCCACCAGCAGCTCTCCGACGGCTCGACCCGGTCTCGAAATCGACCCTTGTCCGAGAAAATGAAGCCCCACGAAACCCTTGAATCC
GCCGTCTACCGGGCTGTCCAAGAAGAGCTCGGTTCGGTTCTTGGCGGCTCTGATTGCTCTGATGTTGTTACGATTGTGCCCGATTCGTATCGGGTTGCGGTCGAGGACCG
GGCCTCGGACTCTTACCCGGGTTTGCCCTGTTCTTACGTTTTGCATCGTGTGGATGTTTGGGTGGATGGTTTGCCGGAGGGGGAGTTTTGCACTGTGGAGGAAGAGGAGA
AAGGGATTGCGGTTGAGGCTGTGACTGTTAAGAAGCATTTCTGGAAATGGGTTAGTCTTGATTCTGTGGATTTTTGA

mRNA sequence

Show/hide mRNA sequence

TCTTCATCTTGTTCCTTCAAATTTGCCCTGTTCCAAATAGAATCACAACAAACCCTAAAAAGCATGTCCAAATCCCCCAACCCCTTTCCCTCTCCTGAATCCCTCGCCGA
ATGGCTCCAACCCCGCCTCCCCTCCGATTCATTTTCTTCATGGGGCGTAAACCCCGCCACCAAAAACGTCCACAATCTCTGGATCGAGCTCTCCCAAGGGGAAATTTCCC
TCTCCGATTCAACCCCACCGATCCGCACCCTCCAAGTCCTTTCCCTTCGAATCCTCGACCCCAACCGAACCCGGGTTCTCCTCGAATCCCACCAGCAGCTCTCCGACGGC
TCGACCCGGTCTCGAAATCGACCCTTGTCCGAGAAAATGAAGCCCCACGAAACCCTTGAATCCGCCGTCTACCGGGCTGTCCAAGAAGAGCTCGGTTCGGTTCTTGGCGG
CTCTGATTGCTCTGATGTTGTTACGATTGTGCCCGATTCGTATCGGGTTGCGGTCGAGGACCGGGCCTCGGACTCTTACCCGGGTTTGCCCTGTTCTTACGTTTTGCATC
GTGTGGATGTTTGGGTGGATGGTTTGCCGGAGGGGGAGTTTTGCACTGTGGAGGAAGAGGAGAAAGGGATTGCGGTTGAGGCTGTGACTGTTAAGAAGCATTTCTGGAAA
TGGGTTAGTCTTGATTCTGTGGATTTTTGAGTTCTATAGCTTTACTTTTATAATTTATGCTCATATGTTGAGTTCAATAACACATGCTGTGGACGTAGGCATGAACTATA
GTCATTACATTCTATTTTATAGGAAATGATGTATGAAAATAACAAAAGAGGAACTATGTAAGTATAAAAAGCCACTCCAGTGTATAATAAGATTGGATAGACTATAATAC
TTAAATGGAATGACACTGTGCCCTAGTCATGGCTAGATAAATTATAGATTTTATTAGTTTGTTTTTCTAAAGAGATTCTCCCTCTGTCAAAGACCAAAATGTGCTAATGA
TTAGAATCCAAAGGGTCTACAAAAAGATTGGTAGACATTTTTTTTTTTTACTATCGGGTCAGCTTGTGCGCACCTCGACTAATGTCACGGGACATAATGTCTGACCCTAC
AATATTTGGATGTCAATGAAACTCGTAGGTGACCACCATAAATTGAACTCATCACCTTAAATACCTCAAGATCTCCTTTGATCACTTGAGTCACTCCGTGATGGTTCTAT
ATGACAATTGAATACTATGGACGTTAGGATGGAAGGATTGCATGAGCTTGAGTTCTTAAATGGAATGTAGTGCTGGTTGAACTATGGCGCTTATTACATTCTATATATAT
ACTTTATGTCGGTTGAGCTATGGTGTTGATGCCTTTATGTCTTATATATTGTTTCATTATCTTTTTGAGTTGGAAGTTTAACTAATATACTTTCTGTCTTTATGTGTTGA
GTTCAACAACAATTGGTGTGAAGTTTTATTTTTGATATGTAACTATTCGAGCCAATTTACACATATTTCGTCTATTGTTACGAATTCATGGGACATGCCACGTAACTCTA
TAATATTTTTATGTCAAGGAAATTTGTAAGAAATTAATTC

Protein sequence

Show/hide protein sequence

MSKSPNPFPSPESLAEWLQPRLPSDSFSSWGVNPATKNVHNLWIELSQGEISLSDSTPPIRTLQVLSLRILDPNRTRVLLESHQQLSDGSTRSRNRPLSEKMKPHETLES
AVYRAVQEELGSVLGGSDCSDVVTIVPDSYRVAVEDRASDSYPGLPCSYVLHRVDVWVDGLPEGEFCTVEEEEKGIAVEAVTVKKHFWKWVSLDSVDF

Sed0025728 (gene) of Chayote v1 genome