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Sed0025738 (gene) of Chayote v1 genome

Gene IDSed0025738
OrganismSechium edule (Chayote v1)
DescriptionDynein light chain
Genome locationLG07:11291142..11292116
RNA-Seq ExpressionSed0025738
SyntenySed0025738
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0050790 - regulation of catalytic activity (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0005085 - guanyl-nucleotide exchange factor activity (molecular function)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462164.1 PREDICTED: dynein light chain LC6, flagellar outer arm-like [Cucumis melo]3.3e-4394.74Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA
        MLEGKALVQDTDMP KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFDN+YGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGV SSA
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA

XP_011659570.1 dynein light chain LC6, flagellar outer arm [Cucumis sativus]9.5e-4394.68Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS
        MLEGKALVQDTDMP KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFDN+YGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGV SS
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS

XP_022964212.1 dynein light chain LC6, flagellar outer arm-like isoform X1 [Cucurbita moschata]7.3e-4394.68Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS
        MLEGKA VQDTDMP+KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGV SS
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS

XP_023513963.1 dynein light chain LC6, flagellar outer arm-like [Cucurbita pepo subsp. pepo]1.9e-4395.74Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS
        MLEGKA VQDTDMPNKMQIQAMDAASKALDLYDV DCKSIAAHIKKDFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGV SS
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS

XP_038897874.1 dynein light chain LC6, flagellar outer arm-like [Benincasa hispida]1.9e-4394.74Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA
        MLEGKAL+QDTDMP KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGV SSA
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA

TrEMBL top hitse value%identityAlignment
A0A0A0K947 Dynein light chain4.6e-4394.68Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS
        MLEGKALVQDTDMP KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFDN+YGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGV SS
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS

A0A1S3CGU5 Dynein light chain1.6e-4394.74Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA
        MLEGKALVQDTDMP KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFDN+YGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGV SSA
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA

A0A5A7UW48 Dynein light chain1.6e-4394.74Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA
        MLEGKALVQDTDMP KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFDN+YGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGV SSA
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA

A0A6J1HH84 Dynein light chain3.5e-4394.68Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS
        MLEGKA VQDTDMP+KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGV SS
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS

A0A6J1KDK4 Dynein light chain3.5e-4394.68Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS
        MLEGKA VQDTDMP+KMQIQAMDAASKALDLYDV DCKSIAAHIKKDFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGV SS
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASS

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm1.6e-1647.19Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFK
        M E KA++++ DMP  MQ  A+D A++AL+ +++   K IAA+IKK+FD +Y   W C+VG NFG + TH    FIYF LG +  L+FK
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFK

P61285 Dynein light chain 1, cytoplasmic4.6e-1644.94Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFK
        M + KA++++ DM  +MQ  +++ A++AL+ Y++   K IAAHIKK+FD +Y   W C+VG NFG + TH    FIYF LG +  L+FK
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFK

P63167 Dynein light chain 1, cytoplasmic4.6e-1644.94Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFK
        M + KA++++ DM  +MQ  +++ A++AL+ Y++   K IAAHIKK+FD +Y   W C+VG NFG + TH    FIYF LG +  L+FK
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFK

Q22799 Dynein light chain 1, cytoplasmic2.7e-1646.07Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFK
        M++ KA++++ DM + MQ  A+D A++AL+ Y++   K IAA+IKK+FD +Y   W C+VG NFG + TH    FIYF LG +  L+FK
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFK

Q24117 Dynein light chain 1, cytoplasmic4.6e-1646.07Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFK
        M + KA++++ DM  +MQ  A+D A++AL+ Y++   K IAA+IKK+FD +Y   W C+VG NFG + TH    FIYF LG +  L+FK
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFK

Arabidopsis top hitse value%identityAlignment
AT1G52240.1 RHO guanyl-nucleotide exchange factor 119.9e-2277.97Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCV
        MLEGKA+V+D+DMP KMQ+QAM  AS+ALDL+DV DCKSIA HIKK+FD RYGSGWQCV
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCV

AT1G52240.2 RHO guanyl-nucleotide exchange factor 112.0e-3878.49Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVAS
        MLEGKA+V+D+DMP KMQ+QAM  AS+ALDL+DV DCKSIA HIKK+FD RYGSGWQCVVGSNFGCFFTHSKG+FIYF+L TL FLIFKG ++
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVAS

AT3G16120.1 Dynein light chain type 1 family protein4.9e-3780Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKG
        MLEGKA V++TDMP KMQ+QAM  AS++LDL+DV D  SIAAHIKK+FD RYGSGWQCVVG+NFGCFFTHSKG+FIYF LGTLNFLIFKG
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKG

AT4G27360.1 Dynein light chain type 1 family protein3.6e-2456.67Show/hide
Query:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKG
        MLEGKA++ DTDM   M+  A+  ASKALD +DV +   IA  IKK+FD  YGSGWQC+VG++FG F TH  G FI+F +G+L  L+FKG
Subjt:  MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKG

AT5G20110.1 Dynein light chain type 1 family protein1.2e-1447.44Show/hide
Query:  DMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFK
        DMP  MQ  A   A   LD  +    K +A ++KK+FD  YG  W C+VGS+FG F THS G FIYF +  L  L+FK
Subjt:  DMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAGGCAAAGCTTTGGTGCAGGACACAGATATGCCTAACAAGATGCAGATCCAAGCCATGGATGCTGCTTCTAAAGCTCTGGATCTCTATGATGTTGTTGACTG
CAAATCCATTGCTGCCCACATCAAAAAGGATTTTGACAACAGATATGGGAGTGGATGGCAATGTGTGGTGGGCTCAAATTTTGGTTGTTTCTTCACCCACTCCAAAGGCT
CTTTCATCTACTTCAAACTGGGGACTCTTAACTTTCTCATCTTCAAAGGGGTGGCTTCTTCAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAAGGCAAAGCTTTGGTGCAGGACACAGATATGCCTAACAAGATGCAGATCCAAGCCATGGATGCTGCTTCTAAAGCTCTGGATCTCTATGATGTTGTTGACTG
CAAATCCATTGCTGCCCACATCAAAAAGGATTTTGACAACAGATATGGGAGTGGATGGCAATGTGTGGTGGGCTCAAATTTTGGTTGTTTCTTCACCCACTCCAAAGGCT
CTTTCATCTACTTCAAACTGGGGACTCTTAACTTTCTCATCTTCAAAGGGGTGGCTTCTTCAGCCTAG
Protein sequenceShow/hide protein sequence
MLEGKALVQDTDMPNKMQIQAMDAASKALDLYDVVDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLGTLNFLIFKGVASSA