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Sed0025739 (gene) of Chayote v1 genome

Gene IDSed0025739
OrganismSechium edule (Chayote v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationLG07:6469809..6472662
RNA-Seq ExpressionSed0025739
SyntenySed0025739
Gene Ontology termsGO:0010270 - photosystem II oxygen evolving complex assembly (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008451826.1 PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo]1.7e-6191.3Show/hide
Query:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKP PFTVEK ARG+PSLAR S SFKV ASGGKKIKTDKPYGING+M+LR+GVDASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGG+TGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_022136536.1 photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]1.9e-6392.75Show/hide
Query:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKP PFTVEK A+G+PSLARTS SFKVEASGGKKIKTDKPYGING+M+LR+G+DASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGG+TGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_022931545.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita moschata]7.0e-6392.03Show/hide
Query:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKP PFTVEK ARG+PSLAR SG FKVEASGGKKIKTDKPYGING+M+LR+GVDASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGG+TGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_023553544.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo]2.4e-6392.75Show/hide
Query:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKP PFTVEK ARG+PSLAR SG FKVEASGGKKIKTDKPYGING+M+LR+GVDASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGG+TGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_038876356.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]6.0e-6291.3Show/hide
Query:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKP PFTVEK A+G+PSLAR S  FKVEASGGKKIKTDKPYGING+M+LR+G+DASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGG+TGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

TrEMBL top hitse value%identityAlignment
A0A1S3BSD1 Photosystem II 10 kDa polypeptide, chloroplastic8.4e-6291.3Show/hide
Query:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKP PFTVEK ARG+PSLAR S SFKV ASGGKKIKTDKPYGING+M+LR+GVDASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGG+TGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A5D3CXX1 Photosystem II 10 kDa polypeptide, chloroplastic8.4e-6291.3Show/hide
Query:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKP PFTVEK ARG+PSLAR S SFKV ASGGKKIKTDKPYGING+M+LR+GVDASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGG+TGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A6J1C3S3 Photosystem II 10 kDa polypeptide, chloroplastic9.0e-6492.75Show/hide
Query:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKP PFTVEK A+G+PSLARTS SFKVEASGGKKIKTDKPYGING+M+LR+G+DASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGG+TGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A6J1EZP8 Photosystem II 10 kDa polypeptide, chloroplastic3.4e-6392.03Show/hide
Query:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKP PFTVEK ARG+PSLAR SG FKVEASGGKKIKTDKPYGING+M+LR+GVDASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGG+TGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A6J1JDA0 Photosystem II 10 kDa polypeptide, chloroplastic3.4e-6392.03Show/hide
Query:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKP PFTVEK ARG+PSLAR SG FKVEASGGKKIKTDKPYGING+M+LR+GVDASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGG+TGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic8.1e-5479.14Show/hide
Query:  MAASVMTSVSLKPVPFTVEKPA-RGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK + +G+PSLAR+S SFKV ASG KK+KTDKPYGING+M LR+GVDASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPVPFTVEKPA-RGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGG+TGLAIWAVTL G+LAGGALLVYNTSAL Q
Subjt:  PSGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

P27202 Photosystem II 10 kDa polypeptide, chloroplastic4.5e-5278.57Show/hide
Query:  MAASVM-TSVSLKPVPFTVEK-PARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKP  FTVEK  ARG+PSL R   SFK+ ASG KKIKTDKP+GING+MDLR+GVDASGRKGKG GVY++VDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPVPFTVEK-PARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        S SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  SPSGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

P49108 Photosystem II 10 kDa polypeptide, chloroplastic2.9e-5178.01Show/hide
Query:  MAASVM-TSVSLKPVPFTVEK-PARGVPSLARTS-GSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD
        MAASVM +SV+LKP  FTVEK  ARG+PSL R S  SF++ ASG KKIKTDKP+G+NG+MDLR+GVDASGRKGKG GVY+FVDKYGANVDGYSPIY+  +
Subjt:  MAASVM-TSVSLKPVPFTVEK-PARGVPSLARTS-GSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD

Query:  WSPSGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        WS SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  WSPSGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic4.0e-5378.42Show/hide
Query:  MAASVMTSVSLKPVPFTVEK-PARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK   +G+PSL R+S SFKV ASG KK+KTDKPYGING+M LR+GVDASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPVPFTVEK-PARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGG+TGLAIWAVTL G+LAGGALLVYNTSAL Q
Subjt:  PSGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic9.6e-5579.86Show/hide
Query:  MAASVMTSVSLKPVPFTVEKPA-RGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM   SLKP PF+VEK A +G+PSLAR+S SF+V+ASG KK+KTDKPYGING+M LR+GVDASGRK KGKGVYQFVDKYGANVDGYSPIY+T DWS
Subjt:  MAASVMTSVSLKPVPFTVEKPA-RGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGG+TGLAIWAVTL G+LAGGALLV+NTSAL Q
Subjt:  PSGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R3.2e-5378.57Show/hide
Query:  MAASVM-TSVSLKPVPFTVEK-PARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKP  FTVEK  ARG+PSL R   SFK+ ASG KKIKTDKP+GING+MDLR+GVDASGRKGKG GVY++VDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPVPFTVEK-PARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        S SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  SPSGDVYVGGSTGLAIWAVTLAGLLAGGALLVYNTSALVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCTCGGTGATGACGTCAGTGAGTCTGAAACCAGTTCCCTTCACCGTCGAGAAACCGGCGAGAGGTGTTCCGTCTCTGGCGAGAACTTCCGGTTCCTTCAAGGT
CGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACAAACCCTACGGAATCAATGGTGCGATGGATTTGAGGAACGGGGTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGG
GAGTGTACCAATTTGTCGACAAGTATGGGGCAAATGTCGATGGCTACAGTCCCATCTATGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTATGTTGGTGGTTCAACT
GGGTTAGCCATTTGGGCTGTCACCTTGGCTGGGCTTCTTGCTGGAGGTGCTCTTCTTGTTTACAACACCAGTGCTTTGGTGCAGTAA
mRNA sequenceShow/hide mRNA sequence
CCAGATTACAGCCATTCACAGAACGCCACGTGGCGATTAGCAAACACATTTCTGATATGATCAGGCTCCGACCTCCGTTTTGCGCCATTTGAGATTTTCGAGCCAAAGAA
GAAGAAGATAAAGCTTATCGATCGGGAAAAATGGCGGCCTCGGTGATGACGTCAGTGAGTCTGAAACCAGTTCCCTTCACCGTCGAGAAACCGGCGAGAGGTGTTCCGTC
TCTGGCGAGAACTTCCGGTTCCTTCAAGGTCGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACAAACCCTACGGAATCAATGGTGCGATGGATTTGAGGAACGGGGTTG
ATGCATCGGGAAGGAAGGGCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAGTATGGGGCAAATGTCGATGGCTACAGTCCCATCTATGACACCAAAGACTGGTCTCCA
AGTGGTGATGTCTATGTTGGTGGTTCAACTGGGTTAGCCATTTGGGCTGTCACCTTGGCTGGGCTTCTTGCTGGAGGTGCTCTTCTTGTTTACAACACCAGTGCTTTGGT
GCAGTAACTTATAGCATCATCATTAAGCAATTACTTGTGTAATTATCTGAACTTTTGTGTCATAAATGCTTGGTAAAATAATTATTCTCTTACTTAATTAGACTCTATGT
TTGATAATCATTTGAAAACTTGATTCATAGTTTTTGAAAGTTAAACTTATTAATTCTACTTCCACCTATAATTCTGTTTTCTAGA
Protein sequenceShow/hide protein sequence
MAASVMTSVSLKPVPFTVEKPARGVPSLARTSGSFKVEASGGKKIKTDKPYGINGAMDLRNGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGST
GLAIWAVTLAGLLAGGALLVYNTSALVQ