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Sed0025749 (gene) of Chayote v1 genome

Gene IDSed0025749
OrganismSechium edule (Chayote v1)
DescriptionGag/pol protein
Genome locationLG06:15594647..15595375
RNA-Seq ExpressionSed0025749
SyntenySed0025749
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037371.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-2054.9Show/hide
Query:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISFNPSTFLNEIQTFESMMKVKGKEGEKNVVTK
        M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EM   VI+EAS+I++  +T LNE+QTFES+MK+KG++GE NV T 
Subjt:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISFNPSTFLNEIQTFESMMKVKGKEGEKNVVTK

Query:  NQ
         +
Subjt:  NQ

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1845.39Show/hide
Query:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN
        M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EMNG VI+EAS++SF                         +T LN
Subjt:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN

Query:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS
        E+QTFES+MK+KG++GE NV T      +  +SGT    SS
Subjt:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1845.39Show/hide
Query:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN
        M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EMNG VI+EAS++SF                         +T LN
Subjt:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN

Query:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS
        E+QTFES+MK+KG++GE NV T      +  +SGT    SS
Subjt:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS

KAA0058447.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-1946.1Show/hide
Query:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN
        M+TA E+M +  EMFGQ S Q+KHDAL+ I+  +M  R SV EHVL MM +FN  EMNG VI+EAS++SF                         +T LN
Subjt:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN

Query:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS
        E+QTFES+MK+KG++GE NV T      K  +SGT    SS
Subjt:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1845.39Show/hide
Query:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN
        M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EMNG VI+EAS++SF                         +T LN
Subjt:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN

Query:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS
        E+QTFES+MK+KG++GE NV T      +  +SGT    SS
Subjt:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein5.8e-1945.39Show/hide
Query:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN
        M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EMNG VI+EAS++SF                         +T LN
Subjt:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN

Query:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS
        E+QTFES+MK+KG++GE NV T      +  +SGT    SS
Subjt:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS

A0A5A7T706 Gag/pol protein1.1e-2054.9Show/hide
Query:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISFNPSTFLNEIQTFESMMKVKGKEGEKNVVTK
        M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EM   VI+EAS+I++  +T LNE+QTFES+MK+KG++GE NV T 
Subjt:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISFNPSTFLNEIQTFESMMKVKGKEGEKNVVTK

Query:  NQ
         +
Subjt:  NQ

A0A5A7UUN7 Gag/pol protein1.2e-1946.1Show/hide
Query:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN
        M+TA E+M +  EMFGQ S Q+KHDAL+ I+  +M  R SV EHVL MM +FN  EMNG VI+EAS++SF                         +T LN
Subjt:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN

Query:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS
        E+QTFES+MK+KG++GE NV T      K  +SGT    SS
Subjt:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS

A0A5A7V4M1 Gag/pol protein5.8e-1945.39Show/hide
Query:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN
        M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EMNG VI+EAS++SF                         +T LN
Subjt:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN

Query:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS
        E+QTFES+MK+KG++GE NV T      +  +SGT    SS
Subjt:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS

A0A5D3CPJ6 Gag/pol protein5.8e-1945.39Show/hide
Query:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN
        M+TA E+M +  EMFGQ S Q+KHDAL+ I+ A+M    SV EHVL MM +FN  EMNG VI+EAS++SF                         +T LN
Subjt:  MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISF-----------------------NPSTFLN

Query:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS
        E+QTFES+MK+KG++GE NV T      +  +SGT    SS
Subjt:  EIQTFESMMKVKGKEGEKNVVT------KNQSSGTTVQGSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAACTGCTTTAGAGATGATGATAGCCAGTCATGAGATGTTTGGGCAACCATCGTCTCAAGTAAAGCATGATGCTCTCCGAGCCATTCATGGTGCTAAAATGAAGTC
AAGAATGTCAGTGATGGAGCATGTGCTCCAGATGATGACGTACTTCAACACGACTGAAATGAATGGGGTCGTTATAGAGGAAGCTAGTCGGATTTCCTTTAACCCTTCCA
CTTTTCTTAATGAAATTCAAACCTTCGAGTCCATGATGAAAGTCAAGGGCAAAGAAGGGGAGAAAAATGTTGTCACCAAGAATCAGAGTTCTGGAACCACGGTTCAAGGA
TCAAGCCTAAAGGAGTTAGAAGTTGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAACTGCTTTAGAGATGATGATAGCCAGTCATGAGATGTTTGGGCAACCATCGTCTCAAGTAAAGCATGATGCTCTCCGAGCCATTCATGGTGCTAAAATGAAGTC
AAGAATGTCAGTGATGGAGCATGTGCTCCAGATGATGACGTACTTCAACACGACTGAAATGAATGGGGTCGTTATAGAGGAAGCTAGTCGGATTTCCTTTAACCCTTCCA
CTTTTCTTAATGAAATTCAAACCTTCGAGTCCATGATGAAAGTCAAGGGCAAAGAAGGGGAGAAAAATGTTGTCACCAAGAATCAGAGTTCTGGAACCACGGTTCAAGGA
TCAAGCCTAAAGGAGTTAGAAGTTGGGTAG
Protein sequenceShow/hide protein sequence
MVTALEMMIASHEMFGQPSSQVKHDALRAIHGAKMKSRMSVMEHVLQMMTYFNTTEMNGVVIEEASRISFNPSTFLNEIQTFESMMKVKGKEGEKNVVTKNQSSGTTVQG
SSLKELEVG