; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0025824 (gene) of Chayote v1 genome

Gene IDSed0025824
OrganismSechium edule (Chayote v1)
Descriptionstructure-specific endonuclease subunit slx1
Genome locationLG06:34697795..34707111
RNA-Seq ExpressionSed0025824
SyntenySed0025824
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]4.3e-7079.65Show/hide
Query:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPK-KQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTI
        MR+LS TFRC K PISNP LSK SSS  SS   TLIVKS+PKPK KQWCVYLIIS+NSPIKTYVGVTLDFDRRLKQHNG+IKGGAKATRAGRPWICA TI
Subjt:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPK-KQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTI

Query:  HGFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF
        HGFKDQSQACEFESKWK++SRKIS ++KE+D+GK +DD++LRLLK+R++ L KVKCLFDCS FEFDW++DPF
Subjt:  HGFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF

XP_008461838.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]4.8e-6978.49Show/hide
Query:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVK-SKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTI
        MR+LSQTFRCQK PISNP L  P SS++S+   TLIVK  +PKP KQWCVYLIIS+NSPIKTYVGVTLDFDRRLKQHNG+IKGGAKAT+AGRPWICA TI
Subjt:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVK-SKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTI

Query:  HGFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF
        HGFKDQSQACEFESKWK++SRKIS ++KEDD+GKQ+D+++LRLLK+RQ+ L KVKCLFDCS FEFDW++DPF
Subjt:  HGFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF

XP_022152567.1 structure-specific endonuclease subunit SLX1 [Momordica charantia]5.7e-6273.68Show/hide
Query:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIH
        MR+LS TFRC K+PISNP  S  SSST   S ATL  +S+ KP K WCVYLIIS+NSP KTYVGVTL+F RRLKQHNG+IKGGAKATRAGRPW+CA  IH
Subjt:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIH

Query:  GFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF
        GFKDQSQACEFESKWKE+SRKI+ KRK+DD  +Q D++ LRLLKNRQ+ LEKVK +FDCS FEFD Q+DPF
Subjt:  GFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF

XP_023528241.1 structure-specific endonuclease subunit slx1 [Cucurbita pepo subsp. pepo]4.8e-6174.27Show/hide
Query:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIH
        MR+LSQTFR QK PIS+  +SK SSS+ S+   TLIVKS+P+PKK WCVYLIIS+N PIKTYVGVTLDFDRRLKQHNG+IKGGAKATRAGRPWICA  IH
Subjt:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIH

Query:  GFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF
        GFKDQSQACEFESKWKEI RK+   RKE     +VDD++LRLLK RQ+ L KVK LFDC+ FEFDW++DPF
Subjt:  GFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF

XP_038903984.1 structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]5.3e-6878.95Show/hide
Query:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIH
        MR+LSQTFR QK   SN  LSK SSS  S+    LIVKS+PKP KQWCVYLIIS+NSPIKTYVGVTLDFDRRLKQHNG+IKGGAKATR GRPW+CA TIH
Subjt:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIH

Query:  GFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF
        GFKDQ QACEFESKWKE+SRKIS K+KEDDMGKQVDD++LRLLK+RQ+ L KVKCLFDCS FEF+W++DPF
Subjt:  GFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein2.1e-7079.65Show/hide
Query:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPK-KQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTI
        MR+LS TFRC K PISNP LSK SSS  SS   TLIVKS+PKPK KQWCVYLIIS+NSPIKTYVGVTLDFDRRLKQHNG+IKGGAKATRAGRPWICA TI
Subjt:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPK-KQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTI

Query:  HGFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF
        HGFKDQSQACEFESKWK++SRKIS ++KE+D+GK +DD++LRLLK+R++ L KVKCLFDCS FEFDW++DPF
Subjt:  HGFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF

A0A1S3CFH5 structure-specific endonuclease subunit slx12.3e-6978.49Show/hide
Query:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVK-SKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTI
        MR+LSQTFRCQK PISNP L  P SS++S+   TLIVK  +PKP KQWCVYLIIS+NSPIKTYVGVTLDFDRRLKQHNG+IKGGAKAT+AGRPWICA TI
Subjt:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVK-SKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTI

Query:  HGFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF
        HGFKDQSQACEFESKWK++SRKIS ++KEDD+GKQ+D+++LRLLK+RQ+ L KVKCLFDCS FEFDW++DPF
Subjt:  HGFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF

A0A6J1DGL6 structure-specific endonuclease subunit SLX12.7e-6273.68Show/hide
Query:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIH
        MR+LS TFRC K+PISNP  S  SSST   S ATL  +S+ KP K WCVYLIIS+NSP KTYVGVTL+F RRLKQHNG+IKGGAKATRAGRPW+CA  IH
Subjt:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIH

Query:  GFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF
        GFKDQSQACEFESKWKE+SRKI+ KRK+DD  +Q D++ LRLLKNRQ+ LEKVK +FDCS FEFD Q+DPF
Subjt:  GFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF

A0A6J1F1V2 structure-specific endonuclease subunit slx14.0e-6174.71Show/hide
Query:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIH
        MR+LSQTFR QK PIS+P +SK SSS  S+   TLIVKS+P+PKK WCVYLIIS+N PIKTYVGVTLDFDRRLKQHNG+IKGGAKATRAGRPWICA  IH
Subjt:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIH

Query:  GFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDP
        GFKDQSQACEFESKWKEI RK+   RKE     +VDD +LRLLK RQ+ L KVK LFDC+ FEFDW++DP
Subjt:  GFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDP

A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X11.5e-6073.1Show/hide
Query:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIH
        MR+LSQTFR QK PIS+P +SK SSS  S+   TL +KS+P+ KK WCVYLIIS+N PIKTYVGVTLDFDRRLKQHNG+IKGGAKATRAGRPWICA  IH
Subjt:  MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIH

Query:  GFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF
        GFK+QSQACEFESKWKEI RK+S  RKE     +VDD++LRLLK RQ+ L KVK LFDC+ FEFDW++DPF
Subjt:  GFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF

SwissProt top hitse value%identityAlignment
A8PWH1 Structure-specific endonuclease subunit SLX19.9e-0942.65Show/hide
Query:  YLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIHGFKDQSQACEFESKWKE
        Y + S + P +TY+G T D  RRL+QHNG +K GA  TR  RPW     ++GF  +  A +FE  W++
Subjt:  YLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIHGFKDQSQACEFESKWKE

B6JY16 Structure-specific endonuclease subunit slx12.3e-1040.7Show/hide
Query:  WCVYLIISTNSPIKT-YVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIHGFKDQSQACEFESKWKEISRKISQKRKEDDM
        +C YL++S  +  ++ Y+G T D  RRL+QHNG+IKGGA  T+  RPW  A  +HGF  +  A +FE  W+       Q  + DD+
Subjt:  WCVYLIISTNSPIKT-YVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIHGFKDQSQACEFESKWKEISRKISQKRKEDDM

B6QFH5 Structure-specific endonuclease subunit slx11.5e-0943.21Show/hide
Query:  PKP-KKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAG--RPWICAGTIHGFKDQSQACEFESKWKEI
        PKP    +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW     I GF  ++ A +FE  W+ +
Subjt:  PKP-KKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAG--RPWICAGTIHGFKDQSQACEFESKWKEI

B8MDD1 Structure-specific endonuclease subunit slx11.2e-0941.67Show/hide
Query:  VKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAG--RPWICAGTIHGFKDQSQACEFESKWKEI
        V +KP P   +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW     + GF  ++ A +FE  W+ +
Subjt:  VKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAG--RPWICAGTIHGFKDQSQACEFESKWKEI

Q9P7M3 Structure-specific endonuclease subunit slx16.8e-1038Show/hide
Query:  WCVYLIIS--TNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIHGFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLK
        +C YL+ S  T S    Y+G T D  RRL+QHNG+I GGA  T+ GRPW  +  ++GF ++  A +FE  W+ +   IS+  K+ D   +     +  LK
Subjt:  WCVYLIIS--TNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIHGFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLK

Arabidopsis top hitse value%identityAlignment
AT2G30350.2 Excinuclease ABC, C subunit, N-terminal1.1e-0740.58Show/hide
Query:  YLIISTNSPIK--TYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIHGFKDQSQACEFESKWK
        YL+ S +   K  TY+G T++  RR++QHNG+I  GA  T+  RPW     I+GF     A +FE  W+
Subjt:  YLIISTNSPIK--TYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIHGFKDQSQACEFESKWK

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal5.7e-3648.55Show/hide
Query:  RVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPK-----PK-KQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWIC
        R+LS+TF   K   SNP   +  +  NS +   +   S P+     PK K W VYLI+ST  PIKTYVG+T DF RRLKQHNG+I+GGAKA+ AGRPW+C
Subjt:  RVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPK-----PK-KQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWIC

Query:  AGTIHGFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQM
        A  I GF   SQA  FESKWK  +RK+ +++K++DM      +S  LL++R++ L KV+   DCS  E DW++
Subjt:  AGTIHGFKDQSQACEFESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGTGCTCTCTCAGACATTTCGTTGCCAAAAAACCCCAATTTCAAATCCACATCTTTCCAAACCTTCTTCGTCAACCAATAGTTCATCGACTGCAACATTGATCGT
CAAATCAAAGCCGAAGCCGAAGAAGCAATGGTGTGTGTATCTCATCATCTCCACCAATTCCCCCATCAAAACCTATGTTGGGGTTACCCTCGACTTCGATCGACGTTTGA
AACAACATAACGGTAAAATAAAGGGTGGGGCAAAAGCAACTCGAGCGGGACGACCCTGGATCTGTGCGGGCACAATTCATGGCTTTAAGGACCAAAGTCAAGCTTGTGAG
TTTGAATCAAAATGGAAAGAAATTTCAAGGAAAATTTCCCAGAAAAGGAAAGAGGACGATATGGGAAAGCAAGTAGATGATAAGAGCTTAAGGTTGCTGAAGAACAGGCA
AAAAGGTCTAGAAAAAGTGAAGTGTCTGTTTGATTGCAGTCCCTTTGAGTTTGATTGGCAAATGGACCCTTTCTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAGAAAAGAAAAAAAGTGCAAAACCGAAGGGGCAGTGGTCGAACCTGCGCCATAGAGAGAAACATGAGAGTGCTCTCTCAGACATTTCGTTGCCAAAAAACCCCAA
TTTCAAATCCACATCTTTCCAAACCTTCTTCGTCAACCAATAGTTCATCGACTGCAACATTGATCGTCAAATCAAAGCCGAAGCCGAAGAAGCAATGGTGTGTGTATCTC
ATCATCTCCACCAATTCCCCCATCAAAACCTATGTTGGGGTTACCCTCGACTTCGATCGACGTTTGAAACAACATAACGGTAAAATAAAGGGTGGGGCAAAAGCAACTCG
AGCGGGACGACCCTGGATCTGTGCGGGCACAATTCATGGCTTTAAGGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAAAGAAATTTCAAGGAAAATTTCCCAGA
AAAGGAAAGAGGACGATATGGGAAAGCAAGTAGATGATAAGAGCTTAAGGTTGCTGAAGAACAGGCAAAAAGGTCTAGAAAAAGTGAAGTGTCTGTTTGATTGCAGTCCC
TTTGAGTTTGATTGGCAAATGGACCCTTTCTGATATTCTTTACACGTTTTATTTAACAATATTTATCTTCAATTCTAAGAATTGAAATTAATATGAAAAGTTGTTTATTA
GATTAGATAAATGTTCTATGCTCAGAACTATGCTAAATTAATAATCTGTTGGGCTGTTAGCCTTGCAGAGTTGTATAAATATCTTATTGTGCATTTAATAATATCAAAAT
TCAGTTCACATACTTATAAATATATGTAATCTGGTCTTAGTTCATATTGAATGGATGGACTATATTATGGAGTTTCCAAATCACTCCGATCTCGAAAGTACACAAGCTTT
TTGGATATATCGACGATACAATCCATACACTTTGGCGAAGATAGTAGGAAAAGATGATGCATCTGGTACAGAAAAATGGTATGAACAGGATCAGGCGACTTGGAACCACC
TTCACCCAAACCGCTTTGTCATTGCTGTTAGATTCTTCAACAAATTCAAGAGTGAGAAAAACTCAATCAAGAAAGAGTCTACTGCTTCCATCACGAATCTTGCAATGTCT
GCAAACTCTAACAATGGACGACGATCCTAGAAAAATTCAAATCACGGACGAGGGCGCTGTTATAAGGGTAGAGGCAGAGGAACGATCAACACTGCTTCCTCCTCAAAGGA
CCTGTCTGCACCAAACGATAATAGCACGATACCCGACTTCGAACAAAAGGTGTATTGTCTGATATGCAAGTGTTTTGGAC
Protein sequenceShow/hide protein sequence
MRVLSQTFRCQKTPISNPHLSKPSSSTNSSSTATLIVKSKPKPKKQWCVYLIISTNSPIKTYVGVTLDFDRRLKQHNGKIKGGAKATRAGRPWICAGTIHGFKDQSQACE
FESKWKEISRKISQKRKEDDMGKQVDDKSLRLLKNRQKGLEKVKCLFDCSPFEFDWQMDPF