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Sed0025830 (gene) of Chayote v1 genome

Gene IDSed0025830
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase
Genome locationLG07:32852177..32852945
RNA-Seq ExpressionSed0025830
SyntenySed0025830
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR041588 - Integrase zinc-binding domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042188.1 pol protein [Cucumis melo var. makuwa]1.0e-3742.22Show/hide
Query:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------
        MQ GKVVAYASRQLK  EQNYPTHD+ELAAVVFA +      YGE+IQ+FTDH+                                              
Subjt:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------

Query:  --------------------------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMK
                                                    +S+GGL +  RLCVP  + ++ ELLSEAHSSPF+ HPG TKMYQDLK+ +WW  MK
Subjt:  --------------------------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMK

Query:  RDVAEFVSRCLTCQQVKAPRQRPAG
        R+VAEFVS+CL CQQVKAPRQ+PAG
Subjt:  RDVAEFVSRCLTCQQVKAPRQRPAG

KAA0047194.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.7e-3851.98Show/hide
Query:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAV-----VFADQDLEAL------------------------------PY-------GERIQMFTDHRASNG
        MQ GKVVAYASRQLK  EQNYPTHD+ELAAV     +  D D E L                              PY        E  Q+     +S+G
Subjt:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAV-----VFADQDLEAL------------------------------PY-------GERIQMFTDHRASNG

Query:  GLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRPAG
        GL +  RLCVP  + ++ ELLSEAHSSPF+ HPG TKMYQDLK+ +WW  MKR+VAEFVSRCL CQQVKAPRQ+PAG
Subjt:  GLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRPAG

KAA0053234.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.7e-3842.79Show/hide
Query:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------
        MQ GKVVAYASRQLK  EQNYPTHD+ELAAVVFA +      YGE+IQ+FTDH+                                              
Subjt:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------

Query:  -----------------------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDV
                                                 +S+GGL +  RLCVP    ++ ELLSEAHSSPF+ HPG TKMYQDLK+ +WW  MKR+V
Subjt:  -----------------------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDV

Query:  AEFVSRCLTCQQVKAPRQRPAG
        AEFVS+CL CQQVKAPRQ+PAG
Subjt:  AEFVSRCLTCQQVKAPRQRPAG

KAA0060263.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.9e-3843.33Show/hide
Query:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------
        MQ GKVVAYASRQLK  E NYPTHD+ELAAVVFA +      YGE+IQ+FTDH+                                              
Subjt:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------

Query:  -----------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQ
                                     +S+GGL + GRLC+P  + ++ +LLSEAHSSPF+ HPG TKMYQ+LK+ +WW  MKR+VA+FVS+CL CQQ
Subjt:  -----------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQ

Query:  VKAPRQRPAG
        VKAPRQ+PAG
Subjt:  VKAPRQRPAG

XP_042019055.1 uncharacterized protein LOC121766889, partial [Salvia splendens]2.0e-3859.29Show/hide
Query:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHRASNGGLAYR----GRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKM
        MQ GKV+AYASRQLKP E NYPTHD+ELAAVV A +      YG R +++TDH++       +    GRLCVP   GLR E++ EAH +P+A HPG TKM
Subjt:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHRASNGGLAYR----GRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKM

Query:  YQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRPAGR
        YQDLK+ FWW GMK+ VA FV RCL CQQVKA  QRP G+
Subjt:  YQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRPAGR

TrEMBL top hitse value%identityAlignment
A0A5A7TH91 Reverse transcriptase4.9e-3842.22Show/hide
Query:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------
        MQ GKVVAYASRQLK  EQNYPTHD+ELAAVVFA +      YGE+IQ+FTDH+                                              
Subjt:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------

Query:  --------------------------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMK
                                                    +S+GGL +  RLCVP  + ++ ELLSEAHSSPF+ HPG TKMYQDLK+ +WW  MK
Subjt:  --------------------------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMK

Query:  RDVAEFVSRCLTCQQVKAPRQRPAG
        R+VAEFVS+CL CQQVKAPRQ+PAG
Subjt:  RDVAEFVSRCLTCQQVKAPRQRPAG

A0A5A7TW65 DNA/RNA polymerases superfamily protein3.7e-3851.98Show/hide
Query:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAV-----VFADQDLEAL------------------------------PY-------GERIQMFTDHRASNG
        MQ GKVVAYASRQLK  EQNYPTHD+ELAAV     +  D D E L                              PY        E  Q+     +S+G
Subjt:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAV-----VFADQDLEAL------------------------------PY-------GERIQMFTDHRASNG

Query:  GLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRPAG
        GL +  RLCVP  + ++ ELLSEAHSSPF+ HPG TKMYQDLK+ +WW  MKR+VAEFVSRCL CQQVKAPRQ+PAG
Subjt:  GLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRPAG

A0A5A7UC07 Reverse transcriptase4.9e-3842.79Show/hide
Query:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------
        MQ GKVVAYASRQLK  EQ YPTHD+ELAAVVFA +      YGE+IQ+FTDH+                                              
Subjt:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------

Query:  -----------------------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDV
                                                 +S+GGL +  RLCVP  + ++ ELLSEAHSSPF+ HPG TKMYQDLK+ +WW  MKR+V
Subjt:  -----------------------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDV

Query:  AEFVSRCLTCQQVKAPRQRPAG
        AEFVSRCL CQQVKAPRQ+PAG
Subjt:  AEFVSRCLTCQQVKAPRQRPAG

A0A5A7UDB1 Reverse transcriptase3.7e-3842.79Show/hide
Query:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------
        MQ GKVVAYASRQLK  EQNYPTHD+ELAAVVFA +      YGE+IQ+FTDH+                                              
Subjt:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------

Query:  -----------------------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDV
                                                 +S+GGL +  RLCVP    ++ ELLSEAHSSPF+ HPG TKMYQDLK+ +WW  MKR+V
Subjt:  -----------------------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDV

Query:  AEFVSRCLTCQQVKAPRQRPAG
        AEFVS+CL CQQVKAPRQ+PAG
Subjt:  AEFVSRCLTCQQVKAPRQRPAG

A0A5A7UWA4 Reverse transcriptase2.9e-3843.33Show/hide
Query:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------
        MQ GKVVAYASRQLK  E NYPTHD+ELAAVVFA +      YGE+IQ+FTDH+                                              
Subjt:  MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR----------------------------------------------

Query:  -----------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQ
                                     +S+GGL + GRLC+P  + ++ +LLSEAHSSPF+ HPG TKMYQ+LK+ +WW  MKR+VA+FVS+CL CQQ
Subjt:  -----------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQ

Query:  VKAPRQRPAG
        VKAPRQ+PAG
Subjt:  VKAPRQRPAG

SwissProt top hitse value%identityAlignment
G5E8B9 Zinc finger and BTB domain-containing protein 111.5e-0433.9Show/hide
Query:  RAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRP
        R  L+  AH  P   H    + + DL +T+WW G+ + V +++ +C  CQ+ K  R RP
Subjt:  RAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRP

O93209 Pro-Pol polyprotein1.2e-0428.95Show/hide
Query:  PTHDMELAAVVFADQDLEALPYGERIQMFTDHRASNGGLAYR--GRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSR
        P  D+E    + A Q+ E LP G   Q +T    +N  +  R  G   +P  +  R +L+ EAH+     H G   +   +++ +WW  MK+D++ F+S 
Subjt:  PTHDMELAAVVFADQDLEALPYGERIQMFTDHRASNGGLAYR--GRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSR

Query:  CLTCQQVKAPRQRP
        C  C+ V     +P
Subjt:  CLTCQQVKAPRQRP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCACGGGAAGGTCGTTGCTTATGCTTCCCGTCAGCTGAAGCCATTTGAGCAGAACTATCCGACTCATGATATGGAGTTGGCGGCAGTGGTGTTTGCTGATCAAGA
TTTGGAGGCACTACCGTATGGTGAGCGGATCCAGATGTTTACCGATCACCGAGCCTCAAACGGTGGGCTGGCGTACAGAGGTCGGTTGTGTGTTCCGGATGTTGCAGGAT
TGCGAGCAGAGTTGCTCTCAGAGGCCCACAGTTCTCCGTTTGCTTGGCACCCCGGGGGTACCAAGATGTATCAGGATCTTAAGCAGACATTCTGGTGGATGGGTATGAAA
AGAGATGTTGCGGAGTTTGTCAGTCGATGTCTCACTTGTCAGCAAGTGAAGGCACCCAGGCAGAGACCAGCCGGCCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGCACGGGAAGGTCGTTGCTTATGCTTCCCGTCAGCTGAAGCCATTTGAGCAGAACTATCCGACTCATGATATGGAGTTGGCGGCAGTGGTGTTTGCTGATCAAGA
TTTGGAGGCACTACCGTATGGTGAGCGGATCCAGATGTTTACCGATCACCGAGCCTCAAACGGTGGGCTGGCGTACAGAGGTCGGTTGTGTGTTCCGGATGTTGCAGGAT
TGCGAGCAGAGTTGCTCTCAGAGGCCCACAGTTCTCCGTTTGCTTGGCACCCCGGGGGTACCAAGATGTATCAGGATCTTAAGCAGACATTCTGGTGGATGGGTATGAAA
AGAGATGTTGCGGAGTTTGTCAGTCGATGTCTCACTTGTCAGCAAGTGAAGGCACCCAGGCAGAGACCAGCCGGCCGCTGA
Protein sequenceShow/hide protein sequence
MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHRASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMK
RDVAEFVSRCLTCQQVKAPRQRPAGR