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Sed0025860 (gene) of Chayote v1 genome

Gene IDSed0025860
OrganismSechium edule (Chayote v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationLG01:61180924..61181256
RNA-Seq ExpressionSed0025860
SyntenySed0025860
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570402.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.8e-3075.89Show/hide
Query:  MSSMSMTASFLPLTAKLPS--AVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVI
        M+SMS+TASFLP TA  PS  A AARR+L V KASTS    +  SN+NL IKNVKVES QGRR+LVAAAVTVAAA+ AKAAMADEP RGSAEAK+KYA I
Subjt:  MSSMSMTASFLPLTAKLPS--AVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVI

Query:  CVTMPTARICRK
        CVTMPTARICRK
Subjt:  CVTMPTARICRK

XP_004143237.1 photosystem II 5 kDa protein, chloroplastic [Cucumis sativus]9.1e-2975.45Show/hide
Query:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV
        M+SM+MTASFLP TA    +  ARR LIVAKASTS    N  SN N+ +KNVKVESRQGRR+LVAAAVTVAAA+LAKAAMADEP RGS EAK+KYA ICV
Subjt:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]1.5e-3177.27Show/hide
Query:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV
        M+SMS+TASFLP TA  PSA AARR+L V KASTS    +  SN+NL IKNVKVES QGRR+LVAAAVTVAAA+ AKAAMADEP RGSAEAK+KYA ICV
Subjt:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

XP_023512156.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita pepo subsp. pepo]6.3e-3075.89Show/hide
Query:  MSSMSMTASFLPLTAKLPS--AVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVI
        M+SMS+TASFLP TA  PS  A AARR+L V KASTS    +  SN+NL IKNVKVES QGRR+LVAAAVTVAAA+ AKAAMADEP RGSAEAK+KYA I
Subjt:  MSSMSMTASFLPLTAKLPS--AVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVI

Query:  CVTMPTARICRK
        CVTMPTARICRK
Subjt:  CVTMPTARICRK

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]4.8e-3076.36Show/hide
Query:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV
        M+SM+MTASFLP TA    + AARR+L+VAKASTS D     SN NL IKNVKVE+RQGRR+LVAAAVTVAAA+LAKAAMADEP RGS EAK+KYA ICV
Subjt:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

TrEMBL top hitse value%identityAlignment
A0A0A0KIB2 Uncharacterized protein4.4e-2975.45Show/hide
Query:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV
        M+SM+MTASFLP TA    +  ARR LIVAKASTS    N  SN N+ +KNVKVESRQGRR+LVAAAVTVAAA+LAKAAMADEP RGS EAK+KYA ICV
Subjt:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic5.7e-2975.45Show/hide
Query:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV
        M+SM+MTASFLP TA    +   RR+LIVAKASTS    N  SN NL +KNVKVESRQGRR+LVAAAVTVAAA+LAKAAMADEP RGS EAK+KYA ICV
Subjt:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

A0A5A7TID9 Photosystem II 5 kDa protein5.7e-2975.45Show/hide
Query:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV
        M+SM+MTASFLP TA    +   RR+LIVAKASTS    N  SN NL +KNVKVESRQGRR+LVAAAVTVAAA+LAKAAMADEP RGS EAK+KYA ICV
Subjt:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

A0A6J1FY72 photosystem II 5 kDa protein, chloroplastic7.2e-3277.27Show/hide
Query:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV
        M+SMS+TASFLP TA  PSA AARR+L V KASTS    +  SN+NL IKNVKVES QGRR+LVAAAVTVAAA+ AKAAMADEP RGSAEAK+KYA ICV
Subjt:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic7.2e-3277.27Show/hide
Query:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV
        M+SMS+TASFLP TA  PSA AARR+L V KASTS    +  SN+NL IKNVKVES QGRR+LVAAAVTVAAA+ AKAAMADEP RGSAEAK+KYA ICV
Subjt:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic5.2e-1143.75Show/hide
Query:  MSSMSMTASFLPLTAKLPSAV--AARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMAD-EPERGSAEAKKKYAV
        M+S++M +SFL  +   P+ V  A RR +++ KA    +       +N+ I   +     GRR+L  A    AA S+AK AMAD EP+RG+ EAKKKY+ 
Subjt:  MSSMSMTASFLPLTAKLPSAV--AARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMAD-EPERGSAEAKKKYAV

Query:  ICVTMPTARICR
        +CVT PTARICR
Subjt:  ICVTMPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic1.3e-0945.95Show/hide
Query:  MSSMSMTASFLPLT-AKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNV-KVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVI
        M+S++MT SFL  T     S    +R L+VA A      A G    ++ +    K E   GRR+++ AA   A  S+A  A A EP+RGSAEAKK YA +
Subjt:  MSSMSMTASFLPLT-AKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNV-KVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVI

Query:  CVTMPTARICR
        CVTMPTARICR
Subjt:  CVTMPTARICR

Q39195 Photosystem II 5 kDa protein, chloroplastic2.0e-1552.25Show/hide
Query:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMA--DEPERGSAEAKKKYAVI
        M+SM+MTA+F P  AK+PSA   RR L V +ASTSD      +  +L +K  +  S   RRDL+  A   A  SLAK AMA  +EP+RG+  AKKKYA +
Subjt:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMA--DEPERGSAEAKKKYAVI

Query:  CVTMPTARICR
        CVTMPTA+ICR
Subjt:  CVTMPTARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein1.0e-1753.1Show/hide
Query:  MSSMSMTASFLPLTAKLPSAVA--ARRSLIVAKASTSDDIANGGSNSNLAIKNVKVE-SRQGRRDLVAAAVTVAAASLAKAAMA-DEPERGSAEAKKKYA
        M+SM+MT+SFLP  + LP+ ++  +RRSL V KAS        GS +  +++N K E S + RRDLV  A   A  SLAK AMA DEP+RG+  AKKKYA
Subjt:  MSSMSMTASFLPLTAKLPSAVA--ARRSLIVAKASTSDDIANGGSNSNLAIKNVKVE-SRQGRRDLVAAAVTVAAASLAKAAMA-DEPERGSAEAKKKYA

Query:  VICVTMPTARICR
         +CVTMPTA+ICR
Subjt:  VICVTMPTARICR

AT3G21055.1 photosystem II subunit T1.4e-1652.25Show/hide
Query:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMA--DEPERGSAEAKKKYAVI
        M+SM+MTA+F P  AK+PSA   RR L V +ASTSD      +  +L +K  +  S   RRDL+  A   A  SLAK AMA  +EP+RG+  AKKKYA +
Subjt:  MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMA--DEPERGSAEAKKKYAVI

Query:  CVTMPTARICR
        CVTMPTA+ICR
Subjt:  CVTMPTARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCCATGTCTATGACAGCCTCCTTCCTCCCCCTCACGGCCAAGCTTCCCTCTGCCGTTGCCGCCAGAAGATCCCTCATTGTAGCCAAGGCCTCCACCTCCGACGA
CATTGCCAACGGTGGCTCCAACTCCAACTTGGCGATCAAGAATGTGAAGGTTGAGAGCAGGCAAGGGCGACGGGACTTGGTGGCAGCTGCTGTGACAGTGGCCGCGGCTA
GCTTGGCAAAGGCTGCCATGGCGGACGAGCCCGAGCGCGGTAGCGCCGAAGCCAAGAAGAAGTATGCTGTCATTTGTGTAACAATGCCAACTGCTCGTATTTGCCGCAAG
TGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATCCATGTCTATGACAGCCTCCTTCCTCCCCCTCACGGCCAAGCTTCCCTCTGCCGTTGCCGCCAGAAGATCCCTCATTGTAGCCAAGGCCTCCACCTCCGACGA
CATTGCCAACGGTGGCTCCAACTCCAACTTGGCGATCAAGAATGTGAAGGTTGAGAGCAGGCAAGGGCGACGGGACTTGGTGGCAGCTGCTGTGACAGTGGCCGCGGCTA
GCTTGGCAAAGGCTGCCATGGCGGACGAGCCCGAGCGCGGTAGCGCCGAAGCCAAGAAGAAGTATGCTGTCATTTGTGTAACAATGCCAACTGCTCGTATTTGCCGCAAG
TGA
Protein sequenceShow/hide protein sequence
MSSMSMTASFLPLTAKLPSAVAARRSLIVAKASTSDDIANGGSNSNLAIKNVKVESRQGRRDLVAAAVTVAAASLAKAAMADEPERGSAEAKKKYAVICVTMPTARICRK