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Sed0025866 (gene) of Chayote v1 genome

Gene IDSed0025866
OrganismSechium edule (Chayote v1)
DescriptionBEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 2 .
Genome locationLG04:38209069..38212847
RNA-Seq ExpressionSed0025866
SyntenySed0025866
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581577.1 hypothetical protein SDJN03_21579, partial [Cucurbita argyrosperma subsp. sororia]3.1e-1155.42Show/hide
Query:  PTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
        P IS KVRE++EF +GEGVD           NCTMD I+DN+S LF LHILPPSLHM FG           LY ESGT TF+L
Subjt:  PTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
XP_004149613.1 uncharacterized protein LOC101209149 [Cucumis sativus]9.0e-1154.76Show/hide
Query:  SPTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
        SP I+ KV E+EEF +GEGVD           NCTMD I+DNHS LFGLHILPPSLHM FG           LY ESG   F+L
Subjt:  SPTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
XP_022934269.1 uncharacterized protein LOC111441481 [Cucurbita moschata]3.1e-1155.42Show/hide
Query:  PTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
        P IS KVRE++EF +GEGVD           NCTMD I+DN+S LF LHILPPSLHM FG           LY ESGT TF+L
Subjt:  PTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
XP_023528575.1 uncharacterized protein LOC111791456 [Cucurbita pepo subsp. pepo]4.0e-1155.42Show/hide
Query:  PTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
        P IS KVRE++EF +GEGVD           NCTMD I+DN+S LF LHILPPSLHM FG           LY ESGT TF+L
Subjt:  PTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
XP_038905771.1 uncharacterized protein LOC120091726 [Benincasa hispida]2.1e-1258.33Show/hide
Query:  SPTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
        SP IS KV E+EEF +GEGVD           NCTMD I+DNHS LFGLHILPPSLHM FG           LY ESGT TF L
Subjt:  SPTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
TrEMBL top hitse value%identityAlignment
A0A0A0LD21 Uncharacterized protein4.3e-1154.76Show/hide
Query:  SPTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
        SP I+ KV E+EEF +GEGVD           NCTMD I+DNHS LFGLHILPPSLHM FG           LY ESG   F+L
Subjt:  SPTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
A0A1S3CFE9 uncharacterized protein LOC1035003129.7e-1154.76Show/hide
Query:  SPTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
        SP IS KV E++EF +GEGVD           NCTMD I+DNHS LFGLHILPPSLHM FG           LY ESG   F L
Subjt:  SPTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
A0A5A7U466 Putative Group 29.7e-1154.76Show/hide
Query:  SPTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
        SP IS KV E++EF +GEGVD           NCTMD I+DNHS LFGLHILPPSLHM FG           LY ESG   F L
Subjt:  SPTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
A0A6J1F239 uncharacterized protein LOC1114414811.5e-1155.42Show/hide
Query:  PTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
        P IS KVRE++EF +GEGVD           NCTMD I+DN+S LF LHILPPSLHM FG           LY ESGT TF+L
Subjt:  PTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
A0A6J1J6W9 uncharacterized protein LOC1114819095.7e-1154.22Show/hide
Query:  PTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
        P IS +VRE++EF +GEGVD           NCTMD I+DN+S LF LHILPPSLHM FG           LY ESGT TF+L
Subjt:  PTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG-----------LYVESGTMTFQL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G08490.1 BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 2 (TAIR:AT3G24600.1)1.0e-0440Show/hide
Query:  PTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG
        P IS ++    +F + EGVD           NC+   I+DN S +FGLHI PPS+   FG
Subjt:  PTIS-KVREMEEFEVGEGVD-----------NCTMDAILDNHSGLFGLHILPPSLHMLFG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGATCGTGACCGAAATCGGGAAGACGAGGACGAGAACGAGAACGAGGAAGTGTATCATGGGAGGACGAAAAGAGGATTATGGGAATTGCTTTGCTTCGCCCACTAT
TTCTAAGGTGAGAGAAATGGAAGAATTTGAGGTAGGTGAAGGAGTAGACAATTGCACAATGGATGCAATTTTGGACAACCACTCTGGGCTCTTTGGGCTTCACATTCTTC
CTCCATCTCTTCATATGTTATTTGGGTTGTATGTTGAAAGTGGAACGATGACGTTTCAGTTAAGAAGCCGATGTACGGTGCAGGAAGAGACATGGAAGACATGCTTGAAT
CAGAACAGAATTGAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGATCGTGACCGAAATCGGGAAGACGAGGACGAGAACGAGAACGAGGAAGTGTATCATGGGAGGACGAAAAGAGGATTATGGGAATTGCTTTGCTTCGCCCACTAT
TTCTAAGGTGAGAGAAATGGAAGAATTTGAGGTAGGTGAAGGAGTAGACAATTGCACAATGGATGCAATTTTGGACAACCACTCTGGGCTCTTTGGGCTTCACATTCTTC
CTCCATCTCTTCATATGTTATTTGGGTTGTATGTTGAAAGTGGAACGATGACGTTTCAGTTAAGAAGCCGATGTACGGTGCAGGAAGAGACATGGAAGACATGCTTGAAT
CAGAACAGAATTGAAGCTTAA
Protein sequenceShow/hide protein sequence
MTIVTEIGKTRTRTRTRKCIMGGRKEDYGNCFASPTISKVREMEEFEVGEGVDNCTMDAILDNHSGLFGLHILPPSLHMLFGLYVESGTMTFQLRSRCTVQEETWKTCLN
QNRIEA