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Sed0025895 (gene) of Chayote v1 genome

Gene IDSed0025895
OrganismSechium edule (Chayote v1)
Descriptionacidic leucine-rich nuclear phosphoprotein 32 family member B-like
Genome locationLG04:6084722..6085261
RNA-Seq ExpressionSed0025895
SyntenySed0025895
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650077.1 hypothetical protein Csa_010314 [Cucumis sativus]8.9e-3460.96Show/hide
Query:  MGMRIMVGLVPVLVVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNH-EPPPQQQLEIIEQVLQ-SPYY-KSH--DQEYIEFHARDEGEED
        MGMRIM+GL+P+LVV+VLLVTSKSSQ F    LFGSPHF+FSIFNSIILLI M NH EP P +Q +I+E +LQ SPY+ K H  D E+ + H     E+D
Subjt:  MGMRIMVGLVPVLVVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNH-EPPPQQQLEIIEQVLQ-SPYY-KSH--DQEYIEFHARDEGEED

Query:  DG----DDEDDSAHEKDDGDRDENEQSNELDEDGYDDHEDDIE--REEKEDEELEKRIEEFIAKVNKRWREEKLRDNFLIQICSRNN
        DG    DD+ D+ +EK+D   DE+E     +++G DD  D+ E   EE+EDEELE RIEEFIAKVNKRWREEKLRD+ LIQICS NN
Subjt:  DG----DDEDDSAHEKDDGDRDENEQSNELDEDGYDDHEDDIE--REEKEDEELEKRIEEFIAKVNKRWREEKLRDNFLIQICSRNN

KAG6596831.1 General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita argyrosperma subsp. sororia]3.4e-1753.99Show/hide
Query:  MGMRIMVGLVPVL---------VVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNHEPPPQQQLEIIEQVLQSPYYKSHDQEYIEF-HARD
        MGMRIMVGLV V+          VVVLLVTSKSSQ F +T+L GSPHFMFSIFNSIILLI +T H PPP Q    I +   S Y +S+ + Y    H   
Subjt:  MGMRIMVGLVPVL---------VVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNHEPPPQQQLEIIEQVLQSPYYKSHDQEYIEF-HARD

Query:  EGEEDDGDDEDDSAHEKDDGDRDENEQSNELDEDGYDDHEDDIEREEKEDEELEKRIEEFIAK
             D + ED++ +EKDD D DE EQ +E DED  D++E     EE  D+ELEKRIEEFIAK
Subjt:  EGEEDDGDDEDDSAHEKDDGDRDENEQSNELDEDGYDDHEDDIEREEKEDEELEKRIEEFIAK

KAG7028360.1 RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-2554.5Show/hide
Query:  MGMRIMVGLVPVL----------VVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNHEPPPQQQLEIIEQVLQSPYYKSHDQEYIEF-HAR
        MGMRIMVGLV V+           VVVLLVTSKSSQ F +T+L GSPHFMFSIFNSIILLI +T H PPP Q    I +   S Y +S+ + Y    H  
Subjt:  MGMRIMVGLVPVL----------VVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNHEPPPQQQLEIIEQVLQSPYYKSHDQEYIEF-HAR

Query:  DEGEEDDGDDEDDSAHEKDDGDRDENEQSNELDEDGYDDHEDDIEREEKEDEELEKRIEEFIAKVNKRWREEKLRDNFLIQICSRNNGC
              D + ED++ +EKDD D DE EQ +E DED  D++E     EE  D+ELEKRIEEFIAKVNKRWREEKL+DN L Q  + +  C
Subjt:  DEGEEDDGDDEDDSAHEKDDGDRDENEQSNELDEDGYDDHEDDIEREEKEDEELEKRIEEFIAKVNKRWREEKLRDNFLIQICSRNNGC

XP_023005569.1 acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Cucurbita maxima]3.6e-2756.84Show/hide
Query:  MGMRIMVGLVPVL-----VVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNHEPPPQQQLEIIEQVLQSPYYKSHDQEY-----IEFHARD
        MGMRIMVGLV V+       VVLL TSKSSQ+F +++L GSPHFMFSIFNSIILLI +T H PP  Q    I +   S Y +S+   Y     IEF+A D
Subjt:  MGMRIMVGLVPVL-----VVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNHEPPPQQQLEIIEQVLQSPYYKSHDQEY-----IEFHARD

Query:  EGEEDDGDDEDDSAHEKDDGDR---DENEQSNELDEDGYDDHEDDIER--EEKEDEELEKRIEEFIAKVNKRWREEKLRDNFLIQICSRN
        +  + D + EDDS +EKD+ ++   DE EQ +E DED   D EDD ER  E+  D+ELEKRIEEFIAKVNKRWREEKLRDN   Q CS N
Subjt:  EGEEDDGDDEDDSAHEKDDGDR---DENEQSNELDEDGYDDHEDDIER--EEKEDEELEKRIEEFIAKVNKRWREEKLRDNFLIQICSRN

XP_038876855.1 glutamic acid-rich protein-like [Benincasa hispida]1.6e-3559.26Show/hide
Query:  MGMRIMVGLVPVLVVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNHEPPPQQQLEIIEQVLQ-SPYYKSHDQEYIEFHARDEGEEDDGDD
        MGMRIMVGLVP+LVV++L VTSKSSQ+F ++ LF SPH +FSIFNSIILLI M NHEP P++Q EI+E  LQ SPY+K H    IEF A D+ E+   +D
Subjt:  MGMRIMVGLVPVLVVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNHEPPPQQQLEIIEQVLQ-SPYYKSHDQEYIEFHARDEGEEDDGDD

Query:  EDD-------SAHEKDD--GDRDENEQSNELDEDGYDDHEDDIEREEKEDEELEKRIEEFIAKVNKRWREEKLRDNFLIQICSRNNGCT
        ED+       + +EK+D   D DE +Q NE + +  D+  D++  +E+EDEELEKRIEEFIAKVNKRWREEKLRD+ LIQICS N   T
Subjt:  EDD-------SAHEKDD--GDRDENEQSNELDEDGYDDHEDDIEREEKEDEELEKRIEEFIAKVNKRWREEKLRDNFLIQICSRNNGCT

TrEMBL top hitse value%identityAlignment
A0A0A0L728 Uncharacterized protein8.5e-1454.07Show/hide
Query:  MTNH-EPPPQQQLEIIEQVLQ-SPYY-KSH--DQEYIEFHARDEGEEDDG----DDEDDSAHEKDDGDRDENEQSNELDEDGYDDHEDDIE--REEKEDE
        M NH EP P +Q +I+E +LQ SPY+ K H  D E+ + H     E+DDG    DD+ D+ +EK+D   DE+E     +++G DD  D+ E   EE+EDE
Subjt:  MTNH-EPPPQQQLEIIEQVLQ-SPYY-KSH--DQEYIEFHARDEGEEDDG----DDEDDSAHEKDDGDRDENEQSNELDEDGYDDHEDDIE--REEKEDE

Query:  ELEKRIEEFIAKVNKRWREEKLRDNFLIQICSRNN
        ELE RIEEFIAKVNKRWREEKLRD+ LIQICS NN
Subjt:  ELEKRIEEFIAKVNKRWREEKLRDNFLIQICSRNN

A0A5D3D7D0 Uncharacterized protein1.3e-0951.52Show/hide
Query:  MTNHEPP--PQQQLEIIEQVL---QSPYY-KSHDQEYIEFHARDEGEEDDGDDEDDSAHEKDDG-DRDENEQSNELDEDGYDDHEDDIER--EEKEDEEL
        M NHE P  P +Q EI++  L    SPY+ K H Q+  E    D+G+  + DD+ D+ +EK+D    D  ++  E DE   ++ E + ER  EE+EDEEL
Subjt:  MTNHEPP--PQQQLEIIEQVL---QSPYY-KSHDQEYIEFHARDEGEEDDGDDEDDSAHEKDDG-DRDENEQSNELDEDGYDDHEDDIER--EEKEDEEL

Query:  EKRIEEFIAKVNKRWREEKLRDNFLIQICSRN
        EKRIEEFIAKVNKRWREEKLRD+ LIQICS N
Subjt:  EKRIEEFIAKVNKRWREEKLRDNFLIQICSRN

A0A6J1E6C0 nucleolin-like2.2e-0642.35Show/hide
Query:  MVGLVPVLVVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNHEPPPQQQLEIIEQVLQSPYYKSHDQEYIEFHARDEGEEDDGDDEDDSA-
        MVGLVP+LVVVVLL  S +      + LFGSP+ +FSIFN +ILL+ + NHEP          + L  P Y    Q+  EF AR+E E+   DDED++A 
Subjt:  MVGLVPVLVVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNHEPPPQQQLEIIEQVLQSPYYKSHDQEYIEFHARDEGEEDDGDDEDDSA-

Query:  ---HEKDDGDRDENEQSNELDE-----DGYDDHE----DDIEREEKEDEELEKRIEEFIAKVNKRWREEK
           +EK D DRDE EQ NE DE     DG+D+ E    D+IE+  +EDE+ +   ++      +RW +E+
Subjt:  ---HEKDDGDRDENEQSNELDE-----DGYDDHE----DDIEREEKEDEELEKRIEEFIAKVNKRWREEK

A0A6J1KZL9 acidic leucine-rich nuclear phosphoprotein 32 family member B-like1.8e-2756.84Show/hide
Query:  MGMRIMVGLVPVL-----VVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNHEPPPQQQLEIIEQVLQSPYYKSHDQEY-----IEFHARD
        MGMRIMVGLV V+       VVLL TSKSSQ+F +++L GSPHFMFSIFNSIILLI +T H PP  Q    I +   S Y +S+   Y     IEF+A D
Subjt:  MGMRIMVGLVPVL-----VVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNHEPPPQQQLEIIEQVLQSPYYKSHDQEY-----IEFHARD

Query:  EGEEDDGDDEDDSAHEKDDGDR---DENEQSNELDEDGYDDHEDDIER--EEKEDEELEKRIEEFIAKVNKRWREEKLRDNFLIQICSRN
        +  + D + EDDS +EKD+ ++   DE EQ +E DED   D EDD ER  E+  D+ELEKRIEEFIAKVNKRWREEKLRDN   Q CS N
Subjt:  EGEEDDGDDEDDSAHEKDDGDR---DENEQSNELDEDGYDDHEDDIER--EEKEDEELEKRIEEFIAKVNKRWREEKLRDNFLIQICSRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATGAGAATTATGGTGGGATTAGTACCTGTTTTGGTGGTGGTGGTTTTGTTGGTAACTTCAAAATCATCTCAACTTTTTCCAAATACTCAACTCTTTGGCAGTCC
CCATTTCATGTTCTCAATCTTCAACTCCATAATTCTTCTCATAGCTATGACAAATCATGAGCCACCACCTCAACAACAACTTGAGATAATAGAGCAAGTTCTTCAATCTC
CCTATTATAAATCTCATGATCAAGAGTACATTGAATTTCATGCTCGTGACGAAGGCGAAGAAGATGATGGTGATGATGAAGACGACAGTGCACATGAGAAAGACGACGGA
GATAGAGATGAAAACGAGCAATCGAATGAGCTAGACGAAGATGGATATGATGATCATGAAGATGACATTGAGCGCGAGGAAAAAGAAGATGAGGAATTGGAGAAGAGGAT
AGAAGAATTCATAGCTAAGGTGAATAAGAGATGGAGAGAAGAGAAATTAAGAGACAATTTCCTTATTCAAATTTGTTCTCGCAATAATGGTTGTACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAATGAGAATTATGGTGGGATTAGTACCTGTTTTGGTGGTGGTGGTTTTGTTGGTAACTTCAAAATCATCTCAACTTTTTCCAAATACTCAACTCTTTGGCAGTCC
CCATTTCATGTTCTCAATCTTCAACTCCATAATTCTTCTCATAGCTATGACAAATCATGAGCCACCACCTCAACAACAACTTGAGATAATAGAGCAAGTTCTTCAATCTC
CCTATTATAAATCTCATGATCAAGAGTACATTGAATTTCATGCTCGTGACGAAGGCGAAGAAGATGATGGTGATGATGAAGACGACAGTGCACATGAGAAAGACGACGGA
GATAGAGATGAAAACGAGCAATCGAATGAGCTAGACGAAGATGGATATGATGATCATGAAGATGACATTGAGCGCGAGGAAAAAGAAGATGAGGAATTGGAGAAGAGGAT
AGAAGAATTCATAGCTAAGGTGAATAAGAGATGGAGAGAAGAGAAATTAAGAGACAATTTCCTTATTCAAATTTGTTCTCGCAATAATGGTTGTACCTAA
Protein sequenceShow/hide protein sequence
MGMRIMVGLVPVLVVVVLLVTSKSSQLFPNTQLFGSPHFMFSIFNSIILLIAMTNHEPPPQQQLEIIEQVLQSPYYKSHDQEYIEFHARDEGEEDDGDDEDDSAHEKDDG
DRDENEQSNELDEDGYDDHEDDIEREEKEDEELEKRIEEFIAKVNKRWREEKLRDNFLIQICSRNNGCT