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Sed0025910 (gene) of Chayote v1 genome

Gene IDSed0025910
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG12:24475600..24476256
RNA-Seq ExpressionSed0025910
SyntenySed0025910
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021763631.1 uncharacterized protein LOC110728264 [Chenopodium quinoa]2.1e-2133.98Show/hide
Query:  INLLFDWSYCVNYIQKFREAN----SSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLE
        ++ L   S  +N+  ++  AN    +++I RS+++          WIPPT++ YKLN DASI KD   GG+G ++R+N  + M+T      G      +E
Subjt:  INLLFDWSYCVNYIQKFREAN----SSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLE

Query:  AITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLY
        A+ +  G+  V D GF+ L V SD   +I  LN      S    I+ +I      +  V F +C R  + VA+++ANL++ L +E FWME+ P SV PL 
Subjt:  AITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLY

Query:  CYEKMA
         ++K+A
Subjt:  CYEKMA

XP_023920779.1 uncharacterized protein LOC112032247 [Quercus suber]1.9e-1730.85Show/hide
Query:  YIQKFREANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGF
        ++ +FR+A     LR    C      E  W PP+   +KLN DA++  +    G+GA++RN+  E M  ++     +    V E +  R  +    + GF
Subjt:  YIQKFREANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGF

Query:  QHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEE-VPISVAPLYCYE
          LVVE D+  ++  L    L+RS LG I+++I  L R +  ++F +  R A+ VA+ LA  A  + ++M+WME+  P  V    CY+
Subjt:  QHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEE-VPISVAPLYCYE

XP_023928118.1 uncharacterized protein LOC112039474 [Quercus suber]2.9e-1834.18Show/hide
Query:  WIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRI
        W PP ++++KLN DA +       GVGA++RN   E M T+      +   +V E I  R  +      GF  LVVE D+  ++  L     + S LG I
Subjt:  WIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRI

Query:  LEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLYCYE
        +++I  LTR +  V+F +  R A+ VAY LA  A  + ++M+WME+ P  V     Y+
Subjt:  LEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLYCYE

XP_030930636.1 uncharacterized protein LOC115956377 [Quercus lobata]2.2e-1833.54Show/hide
Query:  WIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRI
        W PP ++++KLN DA++  +    GVGA++RN K E M  ++     +    V E I  R  L    + GF  LVVE D+  ++  L     + S LG I
Subjt:  WIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRI

Query:  LEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLYCYE
        +++I  LTR +  V F +  R A+ VA+ LA  A  + ++M+W+E+ P  V     Y+
Subjt:  LEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLYCYE

XP_030968337.1 uncharacterized protein LOC115988853 [Quercus lobata]3.7e-1833.15Show/hide
Query:  NYIQKFREANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMG
        +++++FREA    + R        V RE+ W P   N +KLN DA+I  +  A G GA++RN + E M  +A     ++     E +  R  L    D G
Subjt:  NYIQKFREANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMG

Query:  FQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVP
        F  L+VE D+  ++  + +   N S LG + E+I  L      V+ +W +R  ++VAY LA  A  L DE  W+EE P
Subjt:  FQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVP

TrEMBL top hitse value%identityAlignment
A0A2P5EYY2 Ribonuclease H-like domain containing protein2.9e-1629.57Show/hide
Query:  WSYCVNYIQKFREANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLM
        +++C+NY+++F+ A      R++   T +  R I W PP+ + YKLN DA+I +     G GAI+R+     +  +A  F     P   E   +  G+  
Subjt:  WSYCVNYIQKFREANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLM

Query:  VADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISV
           +      VE+D+  +++ L      RSELG  L+++  L      V+  +  R+ ++  Y LA LA+ L DE+FWME++  S+
Subjt:  VADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISV

A0A5B6V4L7 Reverse transcriptase1.3e-1630.99Show/hide
Query:  KLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIAGLN
        +L T N      W PP N+  K+N DAS  +       G I RN +  +M     P++ I  P++ EA    + ++M  +MGFQ + +E D+  +I  L 
Subjt:  KLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIAGLN

Query:  KQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLYCYEK
            +RS +  +++EI G    + SV+F++  R+A+ VA+A+A      +   +W+EE P +V  L   EK
Subjt:  KQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLYCYEK

A0A7J8YG77 RNase H domain-containing protein2.9e-1630.21Show/hide
Query:  VNYIQKF-REANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVAD
        VN+I+ + RE         T+L      RE+FW P   +  K N DA+  +  +    G I+RN++   M     P   I  P   EA      ++   +
Subjt:  VNYIQKF-REANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVAD

Query:  MGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLYCYEKM
        MGF+ LVVE DS  +I  L    ++RS +G I+ EI      + +++F++  RK S+ A+ALA     L +  +W+EEVP  + P+   +++
Subjt:  MGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLYCYEKM

A0A7N2LST3 RNase H domain-containing protein5.8e-1735.14Show/hide
Query:  WIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRI
        W PPT  SYK+N DA++  +  A G G ++RN + E M +LA     +      + +  R+ L    D GF  +V+E DS  ++  ++    NRS LG I
Subjt:  WIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRI

Query:  LEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVP
         E+I  L   + S +  +  R A+ VA+ALA  A  + DE+ W+EE P
Subjt:  LEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVP

A0A803L9N8 Uncharacterized protein2.3e-2133.66Show/hide
Query:  INLLFDWSYCVNYIQKFREAN----SSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLE
        ++ L   S  +N+  ++  AN    +++I RS+++          WIPPT++ YKLN DASI KD   GG+G ++R+N  + M+T      G      +E
Subjt:  INLLFDWSYCVNYIQKFREAN----SSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLE

Query:  AITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLY
        A+ +  G+  V D GF+ L V SD   +I  LN      S    I+ +I      +  V F +C R  + VA+++ANL++ L +E FWME+ P SV PL 
Subjt:  AITVREGLLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLY

Query:  CYEKM
         ++K+
Subjt:  CYEKM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAATAATAATGAAACGATCAATTTGCTATTTGATTGGTCCTACTGCGTTAATTATATTCAAAAGTTTCGAGAAGCAAATAGTTCTACCATTCTACGCTCGACAAA
GCTTTGTACAAATAATGTAAAAAGAGAAATTTTTTGGATTCCTCCAACTAATAACTCTTATAAACTAAATTGTGATGCATCAATTAGAAAGGATTTCTTGGCAGGTGGTG
TTGGAGCTATTTTACGAAATAATAAAAGGGAATCGATGCTGACCTTGGCGACACCCTTTCAAGGGATAACATACCCTCTAGTGCTTGAAGCAATAACTGTTCGAGAAGGC
CTTTTGATGGTGGCTGACATGGGATTTCAACACCTGGTGGTGGAATCAGACTCGGCTGGATTAATCGCAGGCTTAAATAAGCAACTTCTGAATCGTTCAGAATTAGGTAG
AATCCTTGAAGAAATTGCAGGTCTCACAAGGAAGTATTCTTCTGTTACTTTTCAATGGTGCAATCGAAAGGCCAGCGACGTTGCTTATGCACTGGCGAACTTGGCGATTA
TACTTCAAGATGAAATGTTTTGGATGGAGGAGGTGCCGATATCTGTGGCACCTTTGTATTGCTATGAAAAGATGGCATGTGGCCATTCTATTTCTTTGTCCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAATAATAATGAAACGATCAATTTGCTATTTGATTGGTCCTACTGCGTTAATTATATTCAAAAGTTTCGAGAAGCAAATAGTTCTACCATTCTACGCTCGACAAA
GCTTTGTACAAATAATGTAAAAAGAGAAATTTTTTGGATTCCTCCAACTAATAACTCTTATAAACTAAATTGTGATGCATCAATTAGAAAGGATTTCTTGGCAGGTGGTG
TTGGAGCTATTTTACGAAATAATAAAAGGGAATCGATGCTGACCTTGGCGACACCCTTTCAAGGGATAACATACCCTCTAGTGCTTGAAGCAATAACTGTTCGAGAAGGC
CTTTTGATGGTGGCTGACATGGGATTTCAACACCTGGTGGTGGAATCAGACTCGGCTGGATTAATCGCAGGCTTAAATAAGCAACTTCTGAATCGTTCAGAATTAGGTAG
AATCCTTGAAGAAATTGCAGGTCTCACAAGGAAGTATTCTTCTGTTACTTTTCAATGGTGCAATCGAAAGGCCAGCGACGTTGCTTATGCACTGGCGAACTTGGCGATTA
TACTTCAAGATGAAATGTTTTGGATGGAGGAGGTGCCGATATCTGTGGCACCTTTGTATTGCTATGAAAAGATGGCATGTGGCCATTCTATTTCTTTGTCCTTTTAA
Protein sequenceShow/hide protein sequence
MSNNNETINLLFDWSYCVNYIQKFREANSSTILRSTKLCTNNVKREIFWIPPTNNSYKLNCDASIRKDFLAGGVGAILRNNKRESMLTLATPFQGITYPLVLEAITVREG
LLMVADMGFQHLVVESDSAGLIAGLNKQLLNRSELGRILEEIAGLTRKYSSVTFQWCNRKASDVAYALANLAIILQDEMFWMEEVPISVAPLYCYEKMACGHSISLSF