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Sed0025965 (gene) of Chayote v1 genome

Gene IDSed0025965
OrganismSechium edule (Chayote v1)
DescriptionRibonuclease H
Genome locationLG13:19103322..19108120
RNA-Seq ExpressionSed0025965
SyntenySed0025965
Gene Ontology termsNA
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022138036.1 uncharacterized protein LOC111009292 [Momordica charantia]3.2e-4056.9Show/hide
Query:  MEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVED-----------RQIAIERSTD-ACRLHQPHNDALVVT
        MEI+D+  LKWP ++KA    R+K +YCLFH DHGHAT DC+DLKE +E LI++  LKEY+ED           +   IE S D A  L  PHNDALV+T
Subjt:  MEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVED-----------RQIAIERSTD-ACRLHQPHNDALVVT

Query:  LTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSVLSF
        L IAN KV +ILVDGGSSA+I+SL AY AM LG   L  ST PLVGFGG  V PEG IEL VTFG G  + L +
Subjt:  LTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSVLSF

XP_022150858.1 uncharacterized protein LOC111018902 [Momordica charantia]4.2e-4048.95Show/hide
Query:  VVPIEQILMEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVEDRQIAIER----------------------
        +VP+EQ+ +EI+D+  LKWP ++KA    R K +YC FH DH HAT DC+DLKE +E LIQ+  LKEYV+D +    +                      
Subjt:  VVPIEQILMEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVEDRQIAIER----------------------

Query:  -STDACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSV
           +   +  PHNDALV+ L IAN KV  ILVDGGSS DI+SL AY  M LG   L  S  PLVGFGG  V PEG IELPVTFG G  S+
Subjt:  -STDACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSV

XP_022155873.1 uncharacterized protein LOC111022886 [Momordica charantia]6.3e-4454.04Show/hide
Query:  KYTSTVVPIEQILMEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVED---------------RQI------
        K T T V +EQ+LMEI+D+  LKWP ++KA    R+K +Y LFHRDHGHAT DC+DLKE +E LI+   LKEYVED               R+I      
Subjt:  KYTSTVVPIEQILMEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVED---------------RQI------

Query:  ---AIERSTD-ACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSVL
            +E S D A  L  PHNDALV+TL IAN KV RILVDGGSS  I+SL AY AM LG + L  S  PLVGFGG  V PEG IELPV FG G  S++
Subjt:  ---AIERSTD-ACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSVL

XP_022156748.1 uncharacterized protein LOC111023587 [Momordica charantia]3.3e-4553.03Show/hide
Query:  YTSTVVPIEQILMEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKE--------------------------YVE
        YT T +P+EQ+LMEI+D+  LKWP ++KA S  R+K +YCLFHRDH HAT DC+DLKE +E LI++  LKE                          Y+ 
Subjt:  YTSTVVPIEQILMEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKE--------------------------YVE

Query:  DRQIAIERSTD-ACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSV
        DR + IE S D A +L   HNDALV+TL IAN+KV RILVDGGSSADI+S  AY AM L  + L  S  PLVGFGG  V  EG IELPVTFG G   V
Subjt:  DRQIAIERSTD-ACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSV

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.8e-5244.95Show/hide
Query:  PTTYVEVLTHAQKYVSAGELLKSRRAPEDKR-------------------------GLPPRKFEKYTSTVVPIEQILMEIQDKERLKWPAKLKAGSHHRN
        P T+ E L+ AQ+Y+SAGE   S+R P+ KR                           PPRKFEKYT T VPIEQ+LMEI+D+  LKWP ++KA S  R+
Subjt:  PTTYVEVLTHAQKYVSAGELLKSRRAPEDKR-------------------------GLPPRKFEKYTSTVVPIEQILMEIQDKERLKWPAKLKAGSHHRN

Query:  KDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVED--------------------------------------------------------RQIA
        K +YCLFHRDHGHAT DC+DLKE +E LI++  LKEYVE+                                                        R + 
Subjt:  KDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVED--------------------------------------------------------RQIA

Query:  IERSTD-ACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFG
        IE S D A  L  PHNDALV+ L IAN+KV R+LVDGGSSADI+S  AY AM L  + L  S  PLVGFG   V PEG IELPVTFG
Subjt:  IERSTD-ACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFG

TrEMBL top hitse value%identityAlignment
A0A6J1C8I1 uncharacterized protein LOC1110092921.6e-4056.9Show/hide
Query:  MEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVED-----------RQIAIERSTD-ACRLHQPHNDALVVT
        MEI+D+  LKWP ++KA    R+K +YCLFH DHGHAT DC+DLKE +E LI++  LKEY+ED           +   IE S D A  L  PHNDALV+T
Subjt:  MEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVED-----------RQIAIERSTD-ACRLHQPHNDALVVT

Query:  LTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSVLSF
        L IAN KV +ILVDGGSSA+I+SL AY AM LG   L  ST PLVGFGG  V PEG IEL VTFG G  + L +
Subjt:  LTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSVLSF

A0A6J1DAK4 uncharacterized protein LOC1110189022.1e-4048.95Show/hide
Query:  VVPIEQILMEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVEDRQIAIER----------------------
        +VP+EQ+ +EI+D+  LKWP ++KA    R K +YC FH DH HAT DC+DLKE +E LIQ+  LKEYV+D +    +                      
Subjt:  VVPIEQILMEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVEDRQIAIER----------------------

Query:  -STDACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSV
           +   +  PHNDALV+ L IAN KV  ILVDGGSS DI+SL AY  M LG   L  S  PLVGFGG  V PEG IELPVTFG G  S+
Subjt:  -STDACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSV

A0A6J1DP33 uncharacterized protein LOC1110228863.1e-4454.04Show/hide
Query:  KYTSTVVPIEQILMEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVED---------------RQI------
        K T T V +EQ+LMEI+D+  LKWP ++KA    R+K +Y LFHRDHGHAT DC+DLKE +E LI+   LKEYVED               R+I      
Subjt:  KYTSTVVPIEQILMEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVED---------------RQI------

Query:  ---AIERSTD-ACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSVL
            +E S D A  L  PHNDALV+TL IAN KV RILVDGGSS  I+SL AY AM LG + L  S  PLVGFGG  V PEG IELPV FG G  S++
Subjt:  ---AIERSTD-ACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSVL

A0A6J1DRG9 uncharacterized protein LOC1110235871.6e-4553.03Show/hide
Query:  YTSTVVPIEQILMEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKE--------------------------YVE
        YT T +P+EQ+LMEI+D+  LKWP ++KA S  R+K +YCLFHRDH HAT DC+DLKE +E LI++  LKE                          Y+ 
Subjt:  YTSTVVPIEQILMEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKE--------------------------YVE

Query:  DRQIAIERSTD-ACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSV
        DR + IE S D A +L   HNDALV+TL IAN+KV RILVDGGSSADI+S  AY AM L  + L  S  PLVGFGG  V  EG IELPVTFG G   V
Subjt:  DRQIAIERSTD-ACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSV

A0A6J1DWY0 uncharacterized protein LOC1110252931.0e-5245.3Show/hide
Query:  PTTYVEVLTHAQKYVSAGELLKSRRAPEDKR-------------------------GLPPRKFEKYTSTVVPIEQILMEIQDKERLKWPAKLKAGSHHRN
        P T+ E L+ AQ+Y+SAGE   S+R P+ KR                           PPRKFEKYT T VPIEQ+LMEI+D+  LKWP ++KA S  R+
Subjt:  PTTYVEVLTHAQKYVSAGELLKSRRAPEDKR-------------------------GLPPRKFEKYTSTVVPIEQILMEIQDKERLKWPAKLKAGSHHRN

Query:  KDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVED--------------------------------------------------------RQIA
        K +YCLFHRDHGHAT DC+DLKE +E LI++  LKEYVE+                                                        R + 
Subjt:  KDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVED--------------------------------------------------------RQIA

Query:  IERSTD-ACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFG
        IE S D A  L  PHNDALV+ L IAN+KV R+LVDGGSSADILS  AY AM L  + L  S  PLVGFG   V PEG IELPVTFG
Subjt:  IERSTD-ACRLHQPHNDALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTCAAACCGAAGATCGATTTTCGGCTGCACAATGCAGTCCGTGTAGGCCCAAAGGCCAGCCCGAGAATGAGGCCCAACAAGGAAACCCGAAAGGCCAGATTGGG
CCCGGTCCCGCGAGTCCGATCCTTGGGAGGAGTACTGGACACGTGGGGGGACCCTCACATGCAAGGGGTACTAGCTAGGCACGAGGAGGCAGAAAACCCTGAGATCCAGC
CTGTGGTCGAAATGGAACAGAGACCGGTAATGGAAAACTGGGAGGACCCGAAGGTGGCAGCACTAGAGCGAAAAGTGCAAGAGATGGTCGAGACCATCAATCAACTGCGG
AATTTAATCAGCCCATCCGTAGCTATTGCTGCAGTGGGCGGAGATATGCCCCCGGCAAGGGTTCTGCCTCGAAACGAGACAGACCCTCAGGCCAGGGGCGAACCGCGAGT
AAGGCCACGACCCCCTCCTAGGGGGGAGCCCACTGCTAGAGAGAAACGCTCAACGCTCGAGAGGTCAGTCAAGACAAGGTCGAATGCGACACGTCAACGTGCGGGTCATG
ACTTAGAGCCTCGCTCCGAGGCGCCATCGCTTGCCCCTACGACCTATGTAGAGGTGCTTACCCATGCTCAAAAGTATGTGAGCGCTGGGGAACTTCTCAAATCTAGGCGC
GCACCGGAAGACAAACGGGGATTACCCCCAAGAAAATTTGAAAAATACACTTCTACTGTGGTACCCATAGAACAGATCTTGATGGAGATCCAAGATAAAGAACGACTAAA
ATGGCCGGCTAAATTGAAAGCAGGGTCTCATCACCGTAACAAGGATAAGTACTGCCTATTCCATCGGGATCATGGGCACGCAACCTCTGACTGTTATGACCTGAAAGAAA
CCATTGAGGCTCTGATCCAAAAGGTACGGTTAAAGGAATATGTTGAAGATAGGCAAATAGCCATCGAACGTTCGACTGATGCGTGTAGGTTGCACCAACCTCACAATGAC
GCATTGGTGGTGACTCTAACGATAGCCAATATTAAAGTTCGAAGAATATTGGTTGACGGTGGAAGCTCGGCAGACATTCTGTCACTACAAGCATATGATGCTATGAAGCT
TGGGCGGGAGAAGTTATCCCCGAGCACCACCCCACTGGTTGGGTTCGGGGGCAGCACTGTATACCCTGAAGGTTGCATCGAGCTCCCAGTAACGTTTGGTGAAGGAGACC
ACTCGGTGCTTTCCTTCTCACCGAGGAGAATCGACCGAACAGTTGGAAAAAGTGCAACTGCTATCCGAGGGGCAAGTGGTACAGATAGGGTCAAGTTTAAGCCCCGAGCA
CTGGGCGAACCTTATTGCGTTCCTCTAGAACACCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTTCAAACCGAAGATCGATTTTCGGCTGCACAATGCAGTCCGTGTAGGCCCAAAGGCCAGCCCGAGAATGAGGCCCAACAAGGAAACCCGAAAGGCCAGATTGGG
CCCGGTCCCGCGAGTCCGATCCTTGGGAGGAGTACTGGACACGTGGGGGGACCCTCACATGCAAGGGGTACTAGCTAGGCACGAGGAGGCAGAAAACCCTGAGATCCAGC
CTGTGGTCGAAATGGAACAGAGACCGGTAATGGAAAACTGGGAGGACCCGAAGGTGGCAGCACTAGAGCGAAAAGTGCAAGAGATGGTCGAGACCATCAATCAACTGCGG
AATTTAATCAGCCCATCCGTAGCTATTGCTGCAGTGGGCGGAGATATGCCCCCGGCAAGGGTTCTGCCTCGAAACGAGACAGACCCTCAGGCCAGGGGCGAACCGCGAGT
AAGGCCACGACCCCCTCCTAGGGGGGAGCCCACTGCTAGAGAGAAACGCTCAACGCTCGAGAGGTCAGTCAAGACAAGGTCGAATGCGACACGTCAACGTGCGGGTCATG
ACTTAGAGCCTCGCTCCGAGGCGCCATCGCTTGCCCCTACGACCTATGTAGAGGTGCTTACCCATGCTCAAAAGTATGTGAGCGCTGGGGAACTTCTCAAATCTAGGCGC
GCACCGGAAGACAAACGGGGATTACCCCCAAGAAAATTTGAAAAATACACTTCTACTGTGGTACCCATAGAACAGATCTTGATGGAGATCCAAGATAAAGAACGACTAAA
ATGGCCGGCTAAATTGAAAGCAGGGTCTCATCACCGTAACAAGGATAAGTACTGCCTATTCCATCGGGATCATGGGCACGCAACCTCTGACTGTTATGACCTGAAAGAAA
CCATTGAGGCTCTGATCCAAAAGGTACGGTTAAAGGAATATGTTGAAGATAGGCAAATAGCCATCGAACGTTCGACTGATGCGTGTAGGTTGCACCAACCTCACAATGAC
GCATTGGTGGTGACTCTAACGATAGCCAATATTAAAGTTCGAAGAATATTGGTTGACGGTGGAAGCTCGGCAGACATTCTGTCACTACAAGCATATGATGCTATGAAGCT
TGGGCGGGAGAAGTTATCCCCGAGCACCACCCCACTGGTTGGGTTCGGGGGCAGCACTGTATACCCTGAAGGTTGCATCGAGCTCCCAGTAACGTTTGGTGAAGGAGACC
ACTCGGTGCTTTCCTTCTCACCGAGGAGAATCGACCGAACAGTTGGAAAAAGTGCAACTGCTATCCGAGGGGCAAGTGGTACAGATAGGGTCAAGTTTAAGCCCCGAGCA
CTGGGCGAACCTTATTGCGTTCCTCTAGAACACCAGTGA
Protein sequenceShow/hide protein sequence
MSFKPKIDFRLHNAVRVGPKASPRMRPNKETRKARLGPVPRVRSLGGVLDTWGDPHMQGVLARHEEAENPEIQPVVEMEQRPVMENWEDPKVAALERKVQEMVETINQLR
NLISPSVAIAAVGGDMPPARVLPRNETDPQARGEPRVRPRPPPRGEPTAREKRSTLERSVKTRSNATRQRAGHDLEPRSEAPSLAPTTYVEVLTHAQKYVSAGELLKSRR
APEDKRGLPPRKFEKYTSTVVPIEQILMEIQDKERLKWPAKLKAGSHHRNKDKYCLFHRDHGHATSDCYDLKETIEALIQKVRLKEYVEDRQIAIERSTDACRLHQPHND
ALVVTLTIANIKVRRILVDGGSSADILSLQAYDAMKLGREKLSPSTTPLVGFGGSTVYPEGCIELPVTFGEGDHSVLSFSPRRIDRTVGKSATAIRGASGTDRVKFKPRA
LGEPYCVPLEHQ