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Sed0026034 (gene) of Chayote v1 genome

Gene IDSed0026034
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationLG12:32946151..32946867
RNA-Seq ExpressionSed0026034
SyntenySed0026034
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146667.1 uncharacterized protein LOC101206545 [Cucumis sativus]7.5e-4076.86Show/hide
Query:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSD--SSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDL
        M++VDSSFIF G S +P+P + NNNNGRK   TSAKR  DSDSD  SS+Q +Q KFPSL VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAI+KE EDL
Subjt:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSD--SSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDL

Query:  LKIGAFFVVPFCVFLIFSFSE
        LKIGA  VVPFCVFL+FSFS+
Subjt:  LKIGAFFVVPFCVFLIFSFSE

XP_008443827.1 PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]5.2e-4176.86Show/hide
Query:  MSIVDSSFIFTGLSAIPNPQIFN--NNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDL
        M++VDSSFIF G+SA+P+P + N  NNNGRK   TSAKR  DSDS SS+Q +Q KFPSL VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAI+KE E+L
Subjt:  MSIVDSSFIFTGLSAIPNPQIFN--NNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDL

Query:  LKIGAFFVVPFCVFLIFSFSE
        LKIGAF VVPFCVFL+FSFS+
Subjt:  LKIGAFFVVPFCVFLIFSFSE

XP_022933449.1 uncharacterized protein LOC111440861 [Cucurbita moschata]1.2e-4278.23Show/hide
Query:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLK
        M I DSSFIFTGLSA+P+P + +NNN RK  TTSAKR  DSDS SS   +QLKFPSL V+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAI+KE EDLLK
Subjt:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLK

Query:  IGAFFVVPFCVFLIFSFSEKAESS
        IGAF VVPFCVFLIFSFSE+ +SS
Subjt:  IGAFFVVPFCVFLIFSFSEKAESS

XP_023004836.1 uncharacterized protein LOC111498016 [Cucurbita maxima]9.5e-4379.03Show/hide
Query:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLK
        M I DSSFIFTGLSA+P+P I +NNN RK  TTSAKR  DSDS SS   +QLKFPSL VSNPLLARSVV+VLGLGFVDAGYSGDWSRIGAI+KE ED LK
Subjt:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLK

Query:  IGAFFVVPFCVFLIFSFSEKAESS
        IGAF VVPFCVFLIFSFSE+ +SS
Subjt:  IGAFFVVPFCVFLIFSFSEKAESS

XP_023531156.1 uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]2.5e-4378.23Show/hide
Query:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLK
        M I DS+FIFTGLSA+P+P + +NNN RK  TTSAKR  DSDSDS S ++QLKFPSL V+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAI+KE EDLLK
Subjt:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLK

Query:  IGAFFVVPFCVFLIFSFSEKAESS
        IGAF VVPFCVFLIFSFSE+ +SS
Subjt:  IGAFFVVPFCVFLIFSFSEKAESS

TrEMBL top hitse value%identityAlignment
A0A0A0LWH4 Uncharacterized protein3.6e-4076.86Show/hide
Query:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSD--SSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDL
        M++VDSSFIF G S +P+P + NNNNGRK   TSAKR  DSDSD  SS+Q +Q KFPSL VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAI+KE EDL
Subjt:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSD--SSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDL

Query:  LKIGAFFVVPFCVFLIFSFSE
        LKIGA  VVPFCVFL+FSFS+
Subjt:  LKIGAFFVVPFCVFLIFSFSE

A0A1S3B903 uncharacterized protein LOC1034873292.5e-4176.86Show/hide
Query:  MSIVDSSFIFTGLSAIPNPQIFN--NNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDL
        M++VDSSFIF G+SA+P+P + N  NNNGRK   TSAKR  DSDS SS+Q +Q KFPSL VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAI+KE E+L
Subjt:  MSIVDSSFIFTGLSAIPNPQIFN--NNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDL

Query:  LKIGAFFVVPFCVFLIFSFSE
        LKIGAF VVPFCVFL+FSFS+
Subjt:  LKIGAFFVVPFCVFLIFSFSE

A0A6J1C0R6 uncharacterized protein LOC1110073011.3e-3467.21Show/hide
Query:  IVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIG
        + DS+FIF+G SA+ +  +FN NN R  RT  AKR DDS +  S+Q +Q +FPSL V NPL+AR VVSVLGLGFVDAGYSGDWSRIGAI+KE+EDLLKIG
Subjt:  IVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIG

Query:  AFFVVPFCVFLIFSFSEKAESS
        AF VVPFCVFLI SF+++ +SS
Subjt:  AFFVVPFCVFLIFSFSEKAESS

A0A6J1EZT4 uncharacterized protein LOC1114408616.0e-4378.23Show/hide
Query:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLK
        M I DSSFIFTGLSA+P+P + +NNN RK  TTSAKR  DSDS SS   +QLKFPSL V+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAI+KE EDLLK
Subjt:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLK

Query:  IGAFFVVPFCVFLIFSFSEKAESS
        IGAF VVPFCVFLIFSFSE+ +SS
Subjt:  IGAFFVVPFCVFLIFSFSEKAESS

A0A6J1KT82 uncharacterized protein LOC1114980164.6e-4379.03Show/hide
Query:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLK
        M I DSSFIFTGLSA+P+P I +NNN RK  TTSAKR  DSDS SS   +QLKFPSL VSNPLLARSVV+VLGLGFVDAGYSGDWSRIGAI+KE ED LK
Subjt:  MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLK

Query:  IGAFFVVPFCVFLIFSFSEKAESS
        IGAF VVPFCVFLIFSFSE+ +SS
Subjt:  IGAFFVVPFCVFLIFSFSEKAESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30845.1 unknown protein1.3e-1853Show/hide
Query:  NGRKLR------TTSAKRADDSD-SDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFS
        N  KLR      T  +KR D S+ S+      ++K P     N ++ARS ++VL LGF+DAGYSGDWSRIG ISKE E+LLKI AF VVP C+FL  SFS
Subjt:  NGRKLR------TTSAKRADDSD-SDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFCVFLIFSFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATCGTAGATTCAAGTTTTATCTTCACGGGTCTCTCTGCCATACCAAATCCCCAAATTTTCAACAACAACAATGGCCGAAAACTCAGAACCACATCGGCAAAACG
AGCAGACGATTCCGATTCCGATTCATCGTCGCAAGCTAGTCAACTCAAGTTTCCATCGCTGATCGTTTCGAATCCACTTCTCGCCCGATCTGTCGTTTCGGTACTCGGAT
TAGGGTTCGTCGATGCAGGGTACAGTGGAGATTGGTCTAGAATTGGAGCGATTTCGAAGGAGAATGAAGATTTGTTGAAGATTGGCGCTTTCTTCGTGGTTCCGTTTTGC
GTATTTCTCATTTTTTCTTTCTCTGAAAAGGCGGAGTCCTCCTAG
mRNA sequenceShow/hide mRNA sequence
AAAAATAATGGTATTGTACCATACAAAAAAGGATGTGGCTATAGTTAACTTTATGGAAAATTATTTAAGACTTTTCACAATTGTGTCTCGTGATAGGAAATGTCGATCGT
AGATTCAAGTTTTATCTTCACGGGTCTCTCTGCCATACCAAATCCCCAAATTTTCAACAACAACAATGGCCGAAAACTCAGAACCACATCGGCAAAACGAGCAGACGATT
CCGATTCCGATTCATCGTCGCAAGCTAGTCAACTCAAGTTTCCATCGCTGATCGTTTCGAATCCACTTCTCGCCCGATCTGTCGTTTCGGTACTCGGATTAGGGTTCGTC
GATGCAGGGTACAGTGGAGATTGGTCTAGAATTGGAGCGATTTCGAAGGAGAATGAAGATTTGTTGAAGATTGGCGCTTTCTTCGTGGTTCCGTTTTGCGTATTTCTCAT
TTTTTCTTTCTCTGAAAAGGCGGAGTCCTCCTAGCTGTACTCCACTACCAAGCTTACATTATGTTTATGGCTGTTTTTCATATTTTTGGAAACTATGTTTTTATTTTTAA
AATAGATGAAGGTAAACTACTATATTTGGCAGTTAAAAATGGAGAATTATGCCAAAAATTCGCTTGGAGCTA
Protein sequenceShow/hide protein sequence
MSIVDSSFIFTGLSAIPNPQIFNNNNGRKLRTTSAKRADDSDSDSSSQASQLKFPSLIVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAISKENEDLLKIGAFFVVPFC
VFLIFSFSEKAESS