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Sed0026056 (gene) of Chayote v1 genome

Gene IDSed0026056
OrganismSechium edule (Chayote v1)
DescriptionSmall nuclear ribonucleoprotein family protein
Genome locationLG01:16996734..16998813
RNA-Seq ExpressionSed0026056
SyntenySed0026056
Gene Ontology termsGO:0031417 - NatC complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034110 - LSM domain containing 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011649337.1 uncharacterized protein LOC101206200 [Cucumis sativus]5.2e-4890.18Show/hide
Query:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES   +VQ GSNVESN + LD IGKVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_022140017.1 uncharacterized protein LOC111010777 [Momordica charantia]6.1e-4992.86Show/hide
Query:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESE P VQVGSNVESN   LD I KVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STI EQLALLSV
Subjt:  STIDEQLALLSV

XP_022927243.1 uncharacterized protein LOC111434149 [Cucurbita moschata]6.1e-4990.18Show/hide
Query:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES   +VQVG NVESN D LDR+GKVRKLLFRRMLIGIKDGRFFLG+F+C+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023001494.1 uncharacterized protein LOC111495614 [Cucurbita maxima]5.2e-4888.39Show/hide
Query:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        M+QES   +VQVGSNVESN D LDR+GKVRKLLFRRML+GIKDGRFFLG+F+C+DKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023520042.1 uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]1.6e-4991.07Show/hide
Query:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES   +VQVGSNVESN D LDR+GKVRKLLFRRMLIGIKDGRFFLG+F+C+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ5 Sm domain-containing protein2.5e-4890.18Show/hide
Query:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES   +VQ GSNVESN + LD IGKVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A5D3DAS2 Small nuclear ribonucleoprotein family protein isoform 21.2e-4789.29Show/hide
Query:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES   +VQ GSN ESN++ LD IGKVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1CFL8 uncharacterized protein LOC1110107773.0e-4992.86Show/hide
Query:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESE P VQVGSNVESN   LD I KVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STI EQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1EKG3 uncharacterized protein LOC1114341493.0e-4990.18Show/hide
Query:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES   +VQVG NVESN D LDR+GKVRKLLFRRMLIGIKDGRFFLG+F+C+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1KMW6 uncharacterized protein LOC1114956142.5e-4888.39Show/hide
Query:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        M+QES   +VQVGSNVESN D LDR+GKVRKLLFRRML+GIKDGRFFLG+F+C+DKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

SwissProt top hitse value%identityAlignment
P63162 Small nuclear ribonucleoprotein-associated protein N6.7e-0638.27Show/hide
Query:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

P63163 Small nuclear ribonucleoprotein-associated protein N6.7e-0638.27Show/hide
Query:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Q17QN3 Small nuclear ribonucleoprotein-associated protein N6.7e-0638.27Show/hide
Query:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Q55A45 Small nuclear ribonucleoprotein-associated protein B5.1e-0632.95Show/hide
Query:  LDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL
        + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+ILI     VS  V++   E+  L
Subjt:  LDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL

Q60HD3 Small nuclear ribonucleoprotein-associated protein N6.7e-0638.27Show/hide
Query:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  IGKVRKLLFR---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Arabidopsis top hitse value%identityAlignment
AT4G18372.1 Small nuclear ribonucleoprotein family protein1.6e-3969.64Show/hide
Query:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQ +E     V S  E +  D D I ++RKLLFR+ML+GIKDGRFFLG FHCIDKQGNIILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD
Subjt:  MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
         +IDEQL+L+ +
Subjt:  STIDEQLALLSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAAGAATCAGAAGAGCCTATAGTTCAGGTTGGGAGCAATGTCGAGTCCAATACAGACGATTTAGATCGCATAGGAAAGGTGAGAAAGCTGTTGTTCCGTCGAAT
GCTCATAGGCATTAAAGATGGAAGGTTTTTCTTGGGTACCTTTCACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTA
GCTCGCCTTCTCCAATGGAACAGCGGTGCCTCGGTCTTATTCTTATCCCCAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTAGCCCTGCTA
TCAGTCTAG
mRNA sequenceShow/hide mRNA sequence
CGCAGGTGAATCGTTTCTTTTTCACTCTGAAAACGTCCGATTTGGGCGAAATGCGATTCAAAATTACGATGTGAATCGATTTCTTCACGATTCGTTTCGAATCGTACGTT
TTGAATCGCAAAACGCACGTTTTTGATAACCATGTTTAGAACAGTGATTCCTCCTCAAAAGCTTAAATCTTGAAACTAGCAGTCTCACTTTTGAGCTGTTCTATTTGACT
TGGGGATACTGAATTCCCTTTAGGTGCTTGAATGGGATCATTTTGAAGTAACCAAACATGGAACAAGAATCAGAAGAGCCTATAGTTCAGGTTGGGAGCAATGTCGAGTC
CAATACAGACGATTTAGATCGCATAGGAAAGGTGAGAAAGCTGTTGTTCCGTCGAATGCTCATAGGCATTAAAGATGGAAGGTTTTTCTTGGGTACCTTTCACTGCATTG
ACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCGCCTTCTCCAATGGAACAGCGGTGCCTCGGTCTTATTCTTATCCCCAAC
TCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTAGCCCTGCTATCAGTCTAGCAAATAAGATCAAGCCCAAGGTTAAGATAGGAGGGGGGAAAAAA
ACTTTAAACACATGTTTGGAATATATGATCTATGAAAATCAAGACCATTCTCATTTTCTTTGTTAATTTGAAGAGTGCATGCAAGTTGAACCATGAAAACAAAAAATGGA
AGAAATCTCAAGA
Protein sequenceShow/hide protein sequence
MEQESEEPIVQVGSNVESNTDDLDRIGKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL
SV