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Sed0026068 (gene) of Chayote v1 genome

Gene IDSed0026068
OrganismSechium edule (Chayote v1)
DescriptionC2H2-like zinc finger protein
Genome locationLG08:29754054..29754443
RNA-Seq ExpressionSed0026068
SyntenySed0026068
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588875.1 Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. sororia]4.9e-4265.22Show/hide
Query:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-----HAPPPPPP----------
        MADP IYDFLSQ +A S+S PKTT+RKSQSQYSS R+FPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS ILH     H+ PPPPP          
Subjt:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-----HAPPPPPP----------

Query:  ------SSAFLDEYWFNHNNPYGATT-------SAAASPGGLSPNA----EHVTIDLTLRL
               SA  DE+WF+ NN Y  TT       SA+ASP  LSPNA    EHVTIDLTLRL
Subjt:  ------SSAFLDEYWFNHNNPYGATT-------SAAASPGGLSPNA----EHVTIDLTLRL

KAG7022634.1 Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-4264.81Show/hide
Query:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-------HAPPPPPPS-------
        MADP IYDFLSQ +A S+S PKTT+RKSQSQYSS R+FPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS ILH         PPPPPP+       
Subjt:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-------HAPPPPPPS-------

Query:  --------SAFLDEYWFNHNNPYGATT-------SAAASPGGLSPNA----EHVTIDLTLRL
                SA  DE+WF+ NN Y  TT       SA+ASP  LSPNA    EHVTIDLTLRL
Subjt:  --------SAFLDEYWFNHNNPYGATT-------SAAASPGGLSPNA----EHVTIDLTLRL

XP_022928226.1 protein LATE FLOWERING-like [Cucurbita moschata]2.6e-4367.74Show/hide
Query:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-----HAPPPPPP----------
        MADP IYDFLSQ +A S+S PKTT+RKSQSQYSS R+FPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS ILH     H+ PPPPP          
Subjt:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-----HAPPPPPP----------

Query:  ------SSAFLDEYWFNHNNPY-GATTSAAASPGGLSPNA----EHVTIDLTLRL
               SA  DE+WF+ NN Y G TT+A+ASP  LSPNA    EHVTIDLTLRL
Subjt:  ------SSAFLDEYWFNHNNPY-GATTSAAASPGGLSPNA----EHVTIDLTLRL

XP_022989523.1 protein LATE FLOWERING-like [Cucurbita maxima]4.9e-4266.24Show/hide
Query:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-----HAPPPPPP----------
        MADP IYDFLSQ +A S+S PKTT+RKSQSQYSS R+FPCLYCPRKFYTSQALGGHQNAHKRERAASRK FTS ILH     H+ PPPPP          
Subjt:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-----HAPPPPPP----------

Query:  ------SSAFLDEYWFNHNNPYGATT---SAAASPGGLSPNA----EHVTIDLTLRL
               SA  DE+WF+ NN Y  TT   SA+ASP  LSPNA    EHVTIDLTLRL
Subjt:  ------SSAFLDEYWFNHNNPYGATT---SAAASPGGLSPNA----EHVTIDLTLRL

XP_023530190.1 zinc finger protein 7-like [Cucurbita pepo subsp. pepo]1.4e-4164.2Show/hide
Query:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPI-----LHHAPPPPPPS---------
        MADP IYDFLSQ +A S+S PKTT+RKSQSQYSS R+FPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS I     LHH+ PPPPP+         
Subjt:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPI-----LHHAPPPPPPS---------

Query:  ------SAFLDEYWFNHNNPYGATT---------SAAASPGGLSPNA----EHVTIDLTLRL
              S   DE+WF+ NN Y  TT         SA+ASP  LSPNA    EHVTIDLTLRL
Subjt:  ------SAFLDEYWFNHNNPYGATT---------SAAASPGGLSPNA----EHVTIDLTLRL

TrEMBL top hitse value%identityAlignment
A0A6J1DQT0 zinc finger protein 61.1e-3461.9Show/hide
Query:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-------HAPPPPPPS------S
        MADP IYDFLSQ      +T    +RKSQSQYSS R+FPCLYCPRKFYTSQALGGHQNAHKRERAASRK F S +LH       ++PPPPPPS      +
Subjt:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-------HAPPPPPPS------S

Query:  AFLDEYW-FNHNNPYGATTSAAASP-GGLSPNA---EHVTIDLTLRL
        +FLDE+W   H N + A  S+A++P   LSPNA   E+VTIDLTLRL
Subjt:  AFLDEYW-FNHNNPYGATTSAAASP-GGLSPNA---EHVTIDLTLRL

A0A6J1EJQ6 protein LATE FLOWERING-like1.3e-4367.74Show/hide
Query:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-----HAPPPPPP----------
        MADP IYDFLSQ +A S+S PKTT+RKSQSQYSS R+FPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS ILH     H+ PPPPP          
Subjt:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-----HAPPPPPP----------

Query:  ------SSAFLDEYWFNHNNPY-GATTSAAASPGGLSPNA----EHVTIDLTLRL
               SA  DE+WF+ NN Y G TT+A+ASP  LSPNA    EHVTIDLTLRL
Subjt:  ------SSAFLDEYWFNHNNPY-GATTSAAASPGGLSPNA----EHVTIDLTLRL

A0A6J1F843 protein LATE FLOWERING-like2.5e-3657.83Show/hide
Query:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH--HAPPPPPPSSA----------
        MADP IYDFL+Q +  S+S PK  +RK QSQYSS R+FPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF S ILH    PPPPPP++           
Subjt:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH--HAPPPPPPSSA----------

Query:  ----------------FLDEYWFNHNNPYGATT-----SAAASPGGLSPNA----EHVTIDLTLRL
                        FL ++WFN N+    TT     SA+ASP  LSPNA    EHVTIDLTLRL
Subjt:  ----------------FLDEYWFNHNNPYGATT-----SAAASPGGLSPNA----EHVTIDLTLRL

A0A6J1J5R2 protein LATE FLOWERING-like6.3e-3557.32Show/hide
Query:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-----------------------
        MADP IYDFL+Q +  S+S PK  +RK QSQYSS R+FPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF S ILH                       
Subjt:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-----------------------

Query:  --HAPPPPPPSSAFLDEYWFNHNNPYGA------TTSAAASPGGLSPN----AEHVTIDLTLRL
           AP P P  + FL ++WFN N+ Y A      T SA+ASP  LSPN     EHVTIDLTLRL
Subjt:  --HAPPPPPPSSAFLDEYWFNHNNPYGA------TTSAAASPGGLSPN----AEHVTIDLTLRL

A0A6J1JQI7 protein LATE FLOWERING-like2.4e-4266.24Show/hide
Query:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-----HAPPPPPP----------
        MADP IYDFLSQ +A S+S PKTT+RKSQSQYSS R+FPCLYCPRKFYTSQALGGHQNAHKRERAASRK FTS ILH     H+ PPPPP          
Subjt:  MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILH-----HAPPPPPP----------

Query:  ------SSAFLDEYWFNHNNPYGATT---SAAASPGGLSPNA----EHVTIDLTLRL
               SA  DE+WF+ NN Y  TT   SA+ASP  LSPNA    EHVTIDLTLRL
Subjt:  ------SSAFLDEYWFNHNNPYGATT---SAAASPGGLSPNA----EHVTIDLTLRL

SwissProt top hitse value%identityAlignment
Q39263 Zinc finger protein 43.3e-0952.38Show/hide
Query:  SQASAPSDSTPKTTTRKSQSQYS---SPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        S  + P  ST +++  + Q Q     S RVF C YC RKFY+SQALGGHQNAHKRER  +++A
Subjt:  SQASAPSDSTPKTTTRKSQSQYS---SPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA

Q39266 Zinc finger protein 71.5e-0956.14Show/hide
Query:  KSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPIL---HHAP
        KS    ++PRVF C YC RKFY+SQALGGHQNAHKRER  +++A     +   HH P
Subjt:  KSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPIL---HHAP

Q42485 Zinc finger protein 12.6e-0953.57Show/hide
Query:  SAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRK
        S  + S+  +  +  Q Q + PRVF C YC RKFY+SQALGGHQNAHKRER  +++
Subjt:  SAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRK

Q9FFX4 Zinc finger protein KNUCKLES1.5e-1446.6Show/hide
Query:  PTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILHHAPPPPPPSSAFLDEYWFNHNNPYGA
        P+   F+  A   S S  K  +  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRERAA+R+     +L ++PP    ++ FL  Y   + NP+  
Subjt:  PTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILHHAPPPPPPSSAFLDEYWFNHNNPYGA

Query:  TTS
        +TS
Subjt:  TTS

Q9FKA9 Protein LATE FLOWERING1.0e-1060Show/hide
Query:  PKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        P     K+    SS R+FPCL+C RKF++SQALGGHQNAHK+ER A+R+A
Subjt:  PKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 71.1e-1056.14Show/hide
Query:  KSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPIL---HHAP
        KS    ++PRVF C YC RKFY+SQALGGHQNAHKRER  +++A     +   HH P
Subjt:  KSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPIL---HHAP

AT1G66140.1 zinc finger protein 42.4e-1052.38Show/hide
Query:  SQASAPSDSTPKTTTRKSQSQYS---SPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        S  + P  ST +++  + Q Q     S RVF C YC RKFY+SQALGGHQNAHKRER  +++A
Subjt:  SQASAPSDSTPKTTTRKSQSQYS---SPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA

AT1G80730.1 zinc-finger protein 11.8e-1053.57Show/hide
Query:  SAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRK
        S  + S+  +  +  Q Q + PRVF C YC RKFY+SQALGGHQNAHKRER  +++
Subjt:  SAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRK

AT5G14010.1 C2H2 and C2HC zinc fingers superfamily protein1.1e-1546.6Show/hide
Query:  PTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILHHAPPPPPPSSAFLDEYWFNHNNPYGA
        P+   F+  A   S S  K  +  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRERAA+R+     +L ++PP    ++ FL  Y   + NP+  
Subjt:  PTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILHHAPPPPPPSSAFLDEYWFNHNNPYGA

Query:  TTS
        +TS
Subjt:  TTS

AT5G48890.1 C2H2-like zinc finger protein7.4e-1260Show/hide
Query:  PKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        P     K+    SS R+FPCL+C RKF++SQALGGHQNAHK+ER A+R+A
Subjt:  PKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATCCAACCATCTACGACTTCCTCAGCCAAGCATCCGCTCCTTCCGATTCAACCCCGAAAACGACGACGAGAAAATCGCAGTCTCAATACTCTTCCCCTCGCGT
TTTCCCATGCCTCTACTGTCCTCGCAAATTCTACACCTCTCAAGCCCTCGGCGGCCATCAAAACGCCCACAAGAGGGAACGAGCCGCCTCTCGCAAGGCCTTCACCTCTC
CCATTCTCCACCACGCTCCGCCGCCGCCGCCGCCTTCCTCGGCGTTTCTCGATGAGTATTGGTTCAATCACAACAATCCATATGGAGCTACTACTTCCGCCGCCGCTTCG
CCCGGCGGTCTCTCTCCCAATGCTGAACATGTAACGATCGATCTCACTCTTCGTTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGATCCAACCATCTACGACTTCCTCAGCCAAGCATCCGCTCCTTCCGATTCAACCCCGAAAACGACGACGAGAAAATCGCAGTCTCAATACTCTTCCCCTCGCGT
TTTCCCATGCCTCTACTGTCCTCGCAAATTCTACACCTCTCAAGCCCTCGGCGGCCATCAAAACGCCCACAAGAGGGAACGAGCCGCCTCTCGCAAGGCCTTCACCTCTC
CCATTCTCCACCACGCTCCGCCGCCGCCGCCGCCTTCCTCGGCGTTTCTCGATGAGTATTGGTTCAATCACAACAATCCATATGGAGCTACTACTTCCGCCGCCGCTTCG
CCCGGCGGTCTCTCTCCCAATGCTGAACATGTAACGATCGATCTCACTCTTCGTTTATGA
Protein sequenceShow/hide protein sequence
MADPTIYDFLSQASAPSDSTPKTTTRKSQSQYSSPRVFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSPILHHAPPPPPPSSAFLDEYWFNHNNPYGATTSAAAS
PGGLSPNAEHVTIDLTLRL