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Sed0026074 (gene) of Chayote v1 genome

Gene IDSed0026074
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG09:34124637..34126700
RNA-Seq ExpressionSed0026074
SyntenySed0026074
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3622233.1 hypothetical protein FXO38_31400 [Capsicum annuum]3.0e-3163.64Show/hide
Query:  MSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVH
        +   KF++EKFDG +NFG+WQVQVKDVLIQSGLH+ALK RP+   SEK ++D   +ES    SK S+KS +SD+EWEE+D++AAS IRL LAKNVL NV 
Subjt:  MSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVH

Query:  GISTAKELWEKLEAMYQAKGI
        G+ST KELWEKLE +YQ K I
Subjt:  GISTAKELWEKLEAMYQAKGI

KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]6.7e-3162.5Show/hide
Query:  SSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHG
        +S++++VEKFDG +NFGLWQVQVKDVLIQSGLH+ALKGRP    + + S D   T+ +        +S MSD++WE++DLRAASAIRL LAKNVL N+HG
Subjt:  SSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHG

Query:  ISTAKELWEKLEAMYQAKGI
        ISTAK+LWEKLE +YQ KG+
Subjt:  ISTAKELWEKLEAMYQAKGI

KAF7802225.1 cytochrome p450 [Senna tora]2.2e-3466.4Show/hide
Query:  MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVL
        M+ F S+VKFDVEKFDG +NFGLWQVQVKDVLIQSGLH+AL+G+ S  DSEKS                  +S+MSD +WEE+DLRAAS IRL+LAKNVL
Subjt:  MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVL

Query:  TNVHGISTAKELWEKLEAMYQAKGI
         NV GISTAKELW+KLE +YQAKGI
Subjt:  TNVHGISTAKELWEKLEAMYQAKGI

KAF7810708.1 cytochrome p450 [Senna tora]6.1e-3264Show/hide
Query:  MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVL
        M+ F S++KFDVEKFDG +NFG WQVQVKDVLIQSGL +AL+G+ S  DSEKS                  +S+MSD +WEE+DLRAAS IRL LAKNVL
Subjt:  MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVL

Query:  TNVHGISTAKELWEKLEAMYQAKGI
         NV GISTAKELW+KLE +YQAKGI
Subjt:  TNVHGISTAKELWEKLEAMYQAKGI

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]2.4e-4480Show/hide
Query:  MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVL
        M+ FMS VK DVEKFDGM+NFGLWQVQVKDVLIQS LH+ALKGRPS G SEK S DGG  ESSGG S+GSKKS+MS ++WEEMDLRAASAIR +LAKN+L
Subjt:  MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVL

Query:  TNVHGISTAKELWEKLEAMYQAKGI
         NVH ISTAKELWEKLEA+YQAKGI
Subjt:  TNVHGISTAKELWEKLEAMYQAKGI

TrEMBL top hitse value%identityAlignment
A0A2G2YJH4 Uncharacterized protein1.0e-2959.84Show/hide
Query:  FMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNV
        +M   KF++EKFDG +NFGLWQVQVKDVLIQSGLH+ALK RP+ G  +K S+   S+E        S+KS +SD+EWEE+D++  S IRL LAK VLTNV
Subjt:  FMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNV

Query:  HGISTAKELWEKLEAMYQAKGI
         G+ST K+LWEKLE +YQ K I
Subjt:  HGISTAKELWEKLEAMYQAKGI

A0A2G3AMB5 Uncharacterized protein3.0e-2961.48Show/hide
Query:  KFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGIST
        KF++EKFDG +NF LWQVQVKDVLIQSGL++ALK RP+   SEK  +D   ++S    SK S+K  +SD+EWEE+D++AAS IRL LAKNVL NV G+ST
Subjt:  KFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGIST

Query:  AKELWEKLEAMYQAKGIQIGCT
         KELWEKLE +YQ K ++  CT
Subjt:  AKELWEKLEAMYQAKGIQIGCT

A0A444X3K2 Uncharacterized protein1.7e-2755.2Show/hide
Query:  MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVL
        ++ + S+VK ++EKFDG +NFGLWQ+QVKDVLIQSGLH+ALK + SG                           + D+EWEE+DLRAASAIRL LAKNVL
Subjt:  MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVL

Query:  TNVHGISTAKELWEKLEAMYQAKGI
         NV G+  AKELW+KLE +YQAKGI
Subjt:  TNVHGISTAKELWEKLEAMYQAKGI

A0A6A3CWI3 CCHC-type domain-containing protein2.2e-2759.66Show/hide
Query:  SVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGI
        S +FD+EKFDG +NFGLWQVQVKD+LIQSGL++ALKG+P+      S  +G   +     S    KS MS++EWEE+D+RAAS IRL LAKNVL NV   
Subjt:  SVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGI

Query:  STAKELWEKLEAMYQAKGI
        S+ KELWEKLE MYQAK +
Subjt:  STAKELWEKLEAMYQAKGI

A0A6J1CG82 uncharacterized protein LOC1110105211.1e-4480Show/hide
Query:  MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVL
        M+ FMS VK DVEKFDGM+NFGLWQVQVKDVLIQS LH+ALKGRPS G SEK S DGG  ESSGG S+GSKKS+MS ++WEEMDLRAASAIR +LAKN+L
Subjt:  MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVL

Query:  TNVHGISTAKELWEKLEAMYQAKGI
         NVH ISTAKELWEKLEA+YQAKGI
Subjt:  TNVHGISTAKELWEKLEAMYQAKGI

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-948.5e-1334.45Show/hide
Query:  MSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVH
        MS VK++V KF+G   F  WQ +++D+LIQ GLH+ L                             K   M  ++W ++D RAASAIRL+L+ +V+ N+ 
Subjt:  MSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVH

Query:  GISTAKELWEKLEAMYQAK
           TA+ +W +LE++Y +K
Subjt:  GISTAKELWEKLEAMYQAK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGAATGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGATT
ACACCAGGCTTTGAAAGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCCGTGATGGTGGTTCAACAGAGTCTAGTGGTGGTTATAGCAAAGGTTCTAAGAAGTCCA
ACATGAGTGATGACGAATGGGAGGAAATGGATTTGAGAGCTGCAAGTGCCATCAGATTAAATTTGGCTAAAAATGTTCTTACGAATGTGCATGGAATATCAACAGCCAAA
GAGCTTTGGGAGAAGCTTGAAGCGATGTATCAGGCAAAGGGAATTCAAATCGGTTGTACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGAATGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGATT
ACACCAGGCTTTGAAAGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCCGTGATGGTGGTTCAACAGAGTCTAGTGGTGGTTATAGCAAAGGTTCTAAGAAGTCCA
ACATGAGTGATGACGAATGGGAGGAAATGGATTTGAGAGCTGCAAGTGCCATCAGATTAAATTTGGCTAAAAATGTTCTTACGAATGTGCATGGAATATCAACAGCCAAA
GAGCTTTGGGAGAAGCTTGAAGCGATGTATCAGGCAAAGGGAATTCAAATCGGTTGTACCTGA
Protein sequenceShow/hide protein sequence
MASFMSSVKFDVEKFDGMMNFGLWQVQVKDVLIQSGLHQALKGRPSGGDSEKSSRDGGSTESSGGYSKGSKKSNMSDDEWEEMDLRAASAIRLNLAKNVLTNVHGISTAK
ELWEKLEAMYQAKGIQIGCT