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Sed0026086 (gene) of Chayote v1 genome

Gene IDSed0026086
OrganismSechium edule (Chayote v1)
Descriptiontranscription factor PRE5-like
Genome locationLG01:17766285..17767009
RNA-Seq ExpressionSed0026086
SyntenySed0026086
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584448.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia]1.5e-1657.65Show/hide
Query:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLL
        M SS L D++++NL+ +LQTLLP LN      ++++  +  EILKETCDYIKKLQREVDDLS RLW  L+SM  G+DF+++KHLL
Subjt:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLL

TYJ98875.1 transcription factor PRE5-like [Cucumis melo var. makuwa]1.7e-1763.75Show/hide
Query:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDI
        M SSKLGD E++NLV KL+TLLP LN +     NS+ ++ GEILKETCDYIKKLQ+EVDDLS RLW  L+SM  G+DF++
Subjt:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDI

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]5.4e-1962.79Show/hide
Query:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLLL
        M SSKLGD E++NLV KL+TLLP LN +     NS+ ++ GEILKETCDYIKKLQ+EVDDLS RLW  L+SM  G+DF+++K LL+
Subjt:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLLL

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]3.7e-2067.06Show/hide
Query:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLL
        M SSKLGD+E++NLV KLQTLLP LN +     NS+  +AGEILKETCDYIKKLQREVDDLS RLW  L+SM  G+DF+++K LL
Subjt:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLL

XP_038895474.1 transcription factor PRE5-like [Benincasa hispida]4.1e-1962.79Show/hide
Query:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLLL
        M SSKL D+++QNLV KLQTLLPHLN RK  + ++   +A +ILKETCDYIKKLQREVDDLS RLW  L+SM  G+D +++K L+L
Subjt:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLLL

TrEMBL top hitse value%identityAlignment
A0A0A0LQ05 DNA binding protein1.8e-2067.06Show/hide
Query:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLL
        M SSKLGD+E++NLV KLQTLLP LN +     NS+  +AGEILKETCDYIKKLQREVDDLS RLW  L+SM  G+DF+++K LL
Subjt:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLL

A0A1S3B0J1 transcription factor PRE5-like2.6e-1962.79Show/hide
Query:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLLL
        M SSKLGD E++NLV KL+TLLP LN +     NS+ ++ GEILKETCDYIKKLQ+EVDDLS RLW  L+SM  G+DF+++K LL+
Subjt:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLLL

A0A438BUK7 Transcription factor PRE56.9e-1251.76Show/hide
Query:  SSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD--PGLDFDILKHLL
        +S++ D+EI +L+LKLQ LLPH N R+     STG++A  ILKETC YIK+L REV DLS RL   L+S+D   G++ + L+ LL
Subjt:  SSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD--PGLDFDILKHLL

A0A5A7SZP9 Transcription factor PRE5-like2.6e-1962.79Show/hide
Query:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLLL
        M SSKLGD E++NLV KL+TLLP LN +     NS+ ++ GEILKETCDYIKKLQ+EVDDLS RLW  L+SM  G+DF+++K LL+
Subjt:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLLL

A0A5D3BKI2 Transcription factor PRE5-like8.4e-1863.75Show/hide
Query:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDI
        M SSKLGD E++NLV KL+TLLP LN +     NS+ ++ GEILKETCDYIKKLQ+EVDDLS RLW  L+SM  G+DF++
Subjt:  MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDI

SwissProt top hitse value%identityAlignment
A2XD15 Transcription factor ILI31.6e-1050Show/hide
Query:  GSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD
        G  ++ DEEI  L+ KLQ LLP  + R  G   ++ S+A ++LKETC YIK L REVDDLS RL   + +MD
Subjt:  GSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD

F4JCN9 Transcription factor PRE44.7e-1049.32Show/hide
Query:  GSSKLGDEEIQNLVLKLQTLLPHL-NGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD
        G+S + DE+I +LVL+L  LLP L N R+ G +     +A  +L+ETC YI+ L +EVDDLS RL   LES D
Subjt:  GSSKLGDEEIQNLVLKLQTLLPHL-NGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD

Q10R47 Transcription factor ILI31.6e-1050Show/hide
Query:  GSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD
        G  ++ DEEI  L+ KLQ LLP  + R  G   ++ S+A ++LKETC YIK L REVDDLS RL   + +MD
Subjt:  GSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD

Q8GW32 Transcription factor PRE62.1e-1048.61Show/hide
Query:  GSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD
        GSS++ D++I +LV KLQ L+P L  R+     S   +A ++L+ETC+YI+ L REVDDLS RL   L S D
Subjt:  GSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD

Q9CA64 Transcription factor PRE31.8e-0943.06Show/hide
Query:  GSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD
        G+S++ +++I +L++KLQ LLP L   +  D  S    A  +L++TC+YI+ L REVDDLS RL   L + D
Subjt:  GSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.5e-1148.61Show/hide
Query:  GSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD
        GSS++ D++I +LV KLQ L+P L  R+     S   +A ++L+ETC+YI+ L REVDDLS RL   L S D
Subjt:  GSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.3e-1043.06Show/hide
Query:  GSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD
        G+S++ +++I +L++KLQ LLP L   +  D  S    A  +L++TC+YI+ L REVDDLS RL   L + D
Subjt:  GSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.7e-1043.66Show/hide
Query:  SSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD
        +S++ D+++ +LV KL+  LP ++ R+  D  S    A ++L+ETC+YI+KL REVD+LS RL   L+S+D
Subjt:  SSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD

AT3G47710.1 BANQUO 33.4e-1149.32Show/hide
Query:  GSSKLGDEEIQNLVLKLQTLLPHL-NGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD
        G+S + DE+I +LVL+L  LLP L N R+ G +     +A  +L+ETC YI+ L +EVDDLS RL   LES D
Subjt:  GSSKLGDEEIQNLVLKLQTLLPHL-NGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMD

AT5G15160.1 BANQUO 24.9e-1040.28Show/hide
Query:  SSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDP
        SS++ D++I +L+ KL+  +P +   +     S   +A ++L+ETC+YI+ L +E DDLS RL   LES+DP
Subjt:  SSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCCTCGAAATTAGGCGACGAGGAGATTCAAAATCTAGTGTTGAAATTACAAACCTTGCTACCTCACCTCAACGGTCGTAAGCTGGGCGACATGAACTCTACGGG
ATCGGCGGCGGGGGAGATTTTGAAGGAGACGTGTGATTATATAAAGAAATTGCAGAGGGAGGTGGATGATCTAAGTCACAGGCTGTGGAGCCACCTGGAATCAATGGATC
CTGGCCTTGACTTTGACATCCTTAAACATCTTCTTCTTACTAATTTCCAAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCCTCGAAATTAGGCGACGAGGAGATTCAAAATCTAGTGTTGAAATTACAAACCTTGCTACCTCACCTCAACGGTCGTAAGCTGGGCGACATGAACTCTACGGG
ATCGGCGGCGGGGGAGATTTTGAAGGAGACGTGTGATTATATAAAGAAATTGCAGAGGGAGGTGGATGATCTAAGTCACAGGCTGTGGAGCCACCTGGAATCAATGGATC
CTGGCCTTGACTTTGACATCCTTAAACATCTTCTTCTTACTAATTTCCAAATTTAA
Protein sequenceShow/hide protein sequence
MGSSKLGDEEIQNLVLKLQTLLPHLNGRKLGDMNSTGSAAGEILKETCDYIKKLQREVDDLSHRLWSHLESMDPGLDFDILKHLLLTNFQI