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Sed0026089 (gene) of Chayote v1 genome

Gene IDSed0026089
OrganismSechium edule (Chayote v1)
DescriptionTumor necrosis factor receptor family protein
Genome locationLG01:66683078..66685266
RNA-Seq ExpressionSed0026089
SyntenySed0026089
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145885.1 uncharacterized protein LOC101211684 [Cucumis sativus]1.1e-5976.77Show/hide
Query:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG
        MW RSIQR GN A+GGGG AGLVF+T AR FSR+++EN+RKINPK    E SL+A+DLYGVV+QHGPLTI NAWIKAQESGV+GL SKTHMK LLKWMRG
Subjt:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG

Query:  RKILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK
        RK+L LFCH VGSNK+FLLCTPDDPRA+ELK+SSE G QRKKR KSP  RRK SK
Subjt:  RKILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK

XP_008437479.1 PREDICTED: uncharacterized protein LOC103482888 [Cucumis melo]2.9e-5772.9Show/hide
Query:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG
        MW RSIQR GN  +GGGG  GLVF+T AR FSR+++EN+RKINPK    E SL+A+DLYGV++QHGPLT+ NAWIKAQESGV+GL SKTHMK LLKWMRG
Subjt:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG

Query:  RKILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK
        R++L LFCH VGSNK+FLLCTPDDPRA+ELK+ SE G QRKKR KSP  RRK SK
Subjt:  RKILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK

XP_022159821.1 uncharacterized protein LOC111026127 [Momordica charantia]7.7e-5876.28Show/hide
Query:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG
        MWLR  QR G+ A+GGGGSAGLVFST AR FSR+++EN+RKINPK    E SL+A+DLYGVVKQHGPL+I NAWIKAQE GVSGL SKTHMK +LKWMRG
Subjt:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG

Query:  RKILKLFCHQVGSNKEFLLCT-PDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK
        RK+LKL C+QVGSNK+FLL T PDDP+AD+LKSSSELGVQR+KRVK P  RRKPSK
Subjt:  RKILKLFCHQVGSNKEFLLCT-PDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK

XP_023534502.1 uncharacterized protein LOC111796041 [Cucurbita pepo subsp. pepo]4.7e-5572.9Show/hide
Query:  WLRSIQRFGNG-ANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG
        WLR IQ   N    GGGGSAGLVFST AR FSR ++EN+RKINPK   HE SL+A+DLYGVVKQHGPLT+ NAWIKAQESGV GL SKTHMK LLKWMRG
Subjt:  WLRSIQRFGNG-ANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG

Query:  RKILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK
        RK+L+LFC+QVGSNK+FLL TPDDPRA+ELKS+SE  VQR+K+ K+ + RRK SK
Subjt:  RKILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK

XP_038876162.1 uncharacterized protein LOC120068455 [Benincasa hispida]3.0e-6280Show/hide
Query:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG
        MWLRSIQR GN A+GGGGSAGLVFST AR FSR+++EN+RKINPK    E SL+A+DLYGVVKQHGPLT+ NAWIKAQESGV+GL SKTHMK LLKWMRG
Subjt:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG

Query:  RKILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK
        RK+L LFC+QVGSNK+FLLCTPDDPRA++LKSSSE GVQRKKR KSPV RRK SK
Subjt:  RKILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK

TrEMBL top hitse value%identityAlignment
A0A0A0KK52 Uncharacterized protein5.2e-6076.77Show/hide
Query:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG
        MW RSIQR GN A+GGGG AGLVF+T AR FSR+++EN+RKINPK    E SL+A+DLYGVV+QHGPLTI NAWIKAQESGV+GL SKTHMK LLKWMRG
Subjt:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG

Query:  RKILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK
        RK+L LFCH VGSNK+FLLCTPDDPRA+ELK+SSE G QRKKR KSP  RRK SK
Subjt:  RKILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK

A0A1S3ATS9 uncharacterized protein LOC1034828881.4e-5772.9Show/hide
Query:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG
        MW RSIQR GN  +GGGG  GLVF+T AR FSR+++EN+RKINPK    E SL+A+DLYGV++QHGPLT+ NAWIKAQESGV+GL SKTHMK LLKWMRG
Subjt:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG

Query:  RKILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK
        R++L LFCH VGSNK+FLLCTPDDPRA+ELK+ SE G QRKKR KSP  RRK SK
Subjt:  RKILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK

A0A6J1E538 uncharacterized protein LOC1110261273.7e-5876.28Show/hide
Query:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG
        MWLR  QR G+ A+GGGGSAGLVFST AR FSR+++EN+RKINPK    E SL+A+DLYGVVKQHGPL+I NAWIKAQE GVSGL SKTHMK +LKWMRG
Subjt:  MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG

Query:  RKILKLFCHQVGSNKEFLLCT-PDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK
        RK+LKL C+QVGSNK+FLL T PDDP+AD+LKSSSELGVQR+KRVK P  RRKPSK
Subjt:  RKILKLFCHQVGSNKEFLLCT-PDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK

A0A6J1H3U5 uncharacterized protein LOC1114598521.1e-5472.73Show/hide
Query:  WLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRGR
        WLR IQ   N A+GGGGSAGLVFST  R FSR ++EN+RKINPK    E SL+A+DLYGVVKQHGPLT+ NAWIKAQESGV GL SKTHMK LLKWMRGR
Subjt:  WLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRGR

Query:  KILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK
        K+L+LFC+QVGSNK+FLL TPDDPRA+ELKS+SE  VQR+K+ K+ + RRK SK
Subjt:  KILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK

A0A6J1K817 uncharacterized protein LOC1114914954.2e-5472.08Show/hide
Query:  WLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRGR
        WLR IQ   N A+GGGGSAGLVFST AR FSR ++EN+RKINPK    E SL+A+DLYGVVKQHGPLT+ NAWIKAQESGV GL SKTHMK LLKWMRGR
Subjt:  WLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRGR

Query:  KILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK
        K+L+LFC+QVGSNK+FLL TP+DPRA+ELKS+SE  VQR+K+ K+ + R+K SK
Subjt:  KILKLFCHQVGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73940.1 unknown protein9.4e-3048.3Show/hide
Query:  ANGGGG-----SAGLVF-------STIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG
        A GGGG      A  +F       S + R  SRE++ NVRKINPK    E   I+  LY + K HGPL++PN W++AQE+GVSGL SKTHMK LLKWMRG
Subjt:  ANGGGG-----SAGLVF-------STIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRG

Query:  RKILKLFCHQVGSNKEFL-LCTPDDPRADELKSSSELGVQRKKRVKS
        +K+LKL C+QVGS+K+F     P+DP  ++  +  E   Q  K+ +S
Subjt:  RKILKLFCHQVGSNKEFL-LCTPDDPRADELKSSSELGVQRKKRVKS

AT5G49410.1 unknown protein2.4e-1739.39Show/hide
Query:  VFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRGRKILKLFCHQVGSNKEFLLCT
        V   + R F+ +    ++ I   +   +   I R ++ ++K HGPLTI   W + +E G+ GLTSK HMK +L+WMR R+ LKL C+ VG +K+FL  T
Subjt:  VFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRGRKILKLFCHQVGSNKEFLLCT

AT5G49410.2 unknown protein2.4e-1739.39Show/hide
Query:  VFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRGRKILKLFCHQVGSNKEFLLCT
        V   + R F+ +    ++ I   +   +   I R ++ ++K HGPLTI   W + +E G+ GLTSK HMK +L+WMR R+ LKL C+ VG +K+FL  T
Subjt:  VFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRGRKILKLFCHQVGSNKEFLLCT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCTACGCAGCATCCAGAGATTTGGAAATGGTGCTAATGGAGGCGGAGGTTCTGCGGGCCTCGTTTTCAGCACAATCGCTAGGGATTTCTCGAGGGAACAATCTGA
GAATGTTAGGAAGATCAATCCCAAGTCGGCCTCTCATGAACCTTCTTTGATTGCTCGAGATCTCTATGGCGTCGTCAAGCAGCACGGCCCTCTCACTATTCCCAATGCTT
GGATTAAAGCCCAGGAATCTGGCGTGAGTGGTTTGACGAGCAAAACACACATGAAGCAATTGCTGAAATGGATGAGGGGAAGGAAGATTCTGAAGCTTTTCTGCCACCAA
GTTGGTTCCAACAAGGAATTTCTGCTTTGTACTCCGGACGATCCTCGGGCGGATGAGTTGAAGAGTTCTTCAGAATTAGGAGTCCAGAGAAAGAAGAGAGTGAAGTCACC
GGTAAATAGAAGAAAGCCATCAAAATGA
mRNA sequenceShow/hide mRNA sequence
TAAAGAAAAAAAAAAAAATCCTCGATAGGACAAAAAAACGAACCGGTTCGTTTAGATCGTGATGAACCAATTCACAACACAACTGAGTCTGTCGACTCTCTTCGAACTTT
AGAGTCCTGGCGGCAGCCGCTTACCAGTGGCGACGGCGCGTAGAAGTAGCCGGAGGCGAACGGCGGCAGAAATTTGTGCCACAAATTCGATATGTGGCTACGCAGCATCC
AGAGATTTGGAAATGGTGCTAATGGAGGCGGAGGTTCTGCGGGCCTCGTTTTCAGCACAATCGCTAGGGATTTCTCGAGGGAACAATCTGAGAATGTTAGGAAGATCAAT
CCCAAGTCGGCCTCTCATGAACCTTCTTTGATTGCTCGAGATCTCTATGGCGTCGTCAAGCAGCACGGCCCTCTCACTATTCCCAATGCTTGGATTAAAGCCCAGGAATC
TGGCGTGAGTGGTTTGACGAGCAAAACACACATGAAGCAATTGCTGAAATGGATGAGGGGAAGGAAGATTCTGAAGCTTTTCTGCCACCAAGTTGGTTCCAACAAGGAAT
TTCTGCTTTGTACTCCGGACGATCCTCGGGCGGATGAGTTGAAGAGTTCTTCAGAATTAGGAGTCCAGAGAAAGAAGAGAGTGAAGTCACCGGTAAATAGAAGAAAGCCA
TCAAAATGAACCTTTGCTCACGTCTGTTACTCAGCCATGCACTGGCCGAGCTATGATGAATTTGTGAGTTTTTGCCGAAATTTCAACTCTTTTTGGTCTTTTTTTTTTTG
AATATTTCACATTGACTTGTTTCCATGCATTGATATATATTTTTTGATATCCCTACGTTTGACCAGCTTGTGTATCTTGACTAGTGTCATGAGACAACCGTCTGACTTTA
TAATATTTGGATGTCAAGGAAAGTTGTAGGAAATTACTTTCTAGATAGGCAGTCATCATTGATTGAATGCAGTACCTCTTAACTCTTCAATGCCTCTTGACCGCGTGTAG
Protein sequenceShow/hide protein sequence
MWLRSIQRFGNGANGGGGSAGLVFSTIARDFSREQSENVRKINPKSASHEPSLIARDLYGVVKQHGPLTIPNAWIKAQESGVSGLTSKTHMKQLLKWMRGRKILKLFCHQ
VGSNKEFLLCTPDDPRADELKSSSELGVQRKKRVKSPVNRRKPSK