; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0026092 (gene) of Chayote v1 genome

Gene IDSed0026092
OrganismSechium edule (Chayote v1)
Descriptioncold shock domain-containing protein 3-like
Genome locationLG04:10985499..10986671
RNA-Seq ExpressionSed0026092
SyntenySed0026092
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR002059 - Cold-shock protein, DNA-binding
IPR011129 - Cold shock domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR019844 - Cold-shock (CSD) domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596667.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia]8.5e-11886.94Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG-----G
        MAEERLTGVVQWFNDSKGFGFIKPDV+GPDLFVHQSSIKSDGYRSLVVGD VE+QIA GDD KSKAIEVV LDGSSGNRRDNFG GGGRGGRGG     G
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG-----G

Query:  GWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGG-GGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRG--GGGG
        GWRGGDRRNGSSGAGG GCYQCGEQGHLARDC+RASNRGGGGG GGGCFTCGEVGHLARDC +GNSGGGGGGAGGG CYNCGGFGH+ARDCNRG  GGG 
Subjt:  GWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGG-GGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRG--GGGG

Query:  GGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEA
        GGGGGGGCFNCGEYGHLARDCQNE  + GGGGR+GGGGGGG       ANTCFNCGKSGHFARECP+A
Subjt:  GGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEA

XP_022948847.1 cold shock protein 1-like [Cucurbita moschata]1.9e-11786.89Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG-----G
        M EERLTGVVQWFNDSKGFGFIKPDV+GPDLFVHQSSIKSDGYRSLVVGD VE+QIA GDD KSKAIEVV LDGSSGNRRDNFG GGGRGGRGG     G
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG-----G

Query:  GWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGG-GGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRGG-GGGG
        GWRGGDRRNGSSGAGG GCYQCGEQGHLARDC+RASNRGGGGG GGGCFTCGEVGHLARDC +GNSGGGGGGAGGG CYNCGGFGH+ARDCNRGG GGG 
Subjt:  GWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGG-GGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRGG-GGGG

Query:  GGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEA
        GGGGGGCFNCGEYGHLARDCQNE  + GGGGR+GGGGGGG       ANTCFNCGKSGHFARECP+A
Subjt:  GGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEA

XP_023540854.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]5.5e-11785.93Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG-----G
        MAEERLTGVVQWFNDSKGFGFIKPDV+GPDLFVHQSSIKSDGYRSLVVGD VE+QIA GDD KSKAIEVV LDGSSGNRRDNFG GGGRGGRGG     G
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG-----G

Query:  GWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGG-GGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNR----GGG
        GWRGGDRRNGSSGAGG GCYQCGEQGHLARDC+R SNRGGGGG GGGCFTCGEVGHLARDC +GNSGGGGGGAGGG CYNCGGFGH+ARDCNR    GG 
Subjt:  GWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGG-GGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNR----GGG

Query:  GGGGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEA
        GGGGGGGGGCFNCGEYGHLARDCQNE  + GGGGR+GGGGGGG       ANTCFNCGKSGHFARECP+A
Subjt:  GGGGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEA

XP_023551806.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]3.2e-11786.19Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG------
        MAEERLTGVVQWFNDSKGFGFIKPDV+GPDLFVHQSSIKSDGYRSLVVGD VE+QIAPGDD KSKAIEVV LDGSSGNRRDNFG GGGRGGRGG      
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG------

Query:  -GGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGG-GGGGGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRGG-GG
         GGWRGGDRRNGSSGAGG GCYQCGEQGHLARDC+RASNRGG GGGGGGCFTCGEVGHLARDC +GNSGGGGGGAGGGACYNCGGFGH+ARDCNRGG GG
Subjt:  -GGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGG-GGGGGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRGG-GG

Query:  GGGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPE
        G GGGGGGCFNCGEYGHLARDCQNE    GGGGR+GGGG          ANTCFNCGKSGHFARECP+
Subjt:  GGGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPE

XP_038876618.1 cold shock domain-containing protein 3 [Benincasa hispida]1.2e-11685.66Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG------
        MAEERLTGVVQWFNDSKGFGFIKPDV+GPDLFVHQSSIKSDGYRSLVVGD VE+QIAPGDD KSKAIEVV LDGSSGNRRDNFG GGGRGGRGG      
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG------

Query:  --GGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNR-GGGGGGGGCFTCGEVGHLARDCSQGNSGGGGGGAGG--GACYNCGGFGHMARDCNRGG
          GGWRGGDRRNG+SGAGG  CYQCGEQGHLARDC+RASNR GGGGGGGGCFTCGEVGHLARDC +GNSGGGGGG GG  GACYNCGGFGH+ARDCNRGG
Subjt:  --GGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNR-GGGGGGGGCFTCGEVGHLARDCSQGNSGGGGGGAGG--GACYNCGGFGHMARDCNRGG

Query:  GGGGGGGGGGCFNCGEYGHLARDCQNE-RSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEA
         GGG GGGGGCFNCGEYGH+ARDCQNE R SGGGGGR+GGGG     GGGG  NTCFNCGKSGHFARECP+A
Subjt:  GGGGGGGGGGCFNCGEYGHLARDCQNE-RSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEA

TrEMBL top hitse value%identityAlignment
A0A0A0L4X7 Uncharacterized protein2.1e-11483.81Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNF-GAGGGRGGRGG-----
        MAEERLTGVVQWFNDSKGFGFIKPDV+GPDLFVHQSSIKSDGYRSLVVGD VE+QIAPGDD KSKAIEVV LDGSSGNRRDNF G GGGRGGRGG     
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNF-GAGGGRGGRGG-----

Query:  ---GGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNR-GGGGGGGGCFTCGEVGHLARDCSQGNS--GGGGGGAGGGACYNCGGFGHMARDCNR-
           GGWRGGDRRNG+SGAGG GCYQCGEQGHLARDC+R SNR GGGGGGGGCFTCGEVGHLARDC +GNS  GGGGGG GGGACYNCGGFGH+ARDCNR 
Subjt:  ---GGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNR-GGGGGGGGCFTCGEVGHLARDCSQGNS--GGGGGGAGGGACYNCGGFGHMARDCNR-

Query:  --GGGGGGGGGGGGCFNCGEYGHLARDCQNER--SSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEAA
          GGG GGGGGGGGCFNCGEYGH+ARDCQNE   S GGGGGR+GGGG     GGGG +NTCFNCGKSGHFARECP+A+
Subjt:  --GGGGGGGGGGGGCFNCGEYGHLARDCQNER--SSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEAA

A0A5D3CJR2 Cold shock domain-containing protein 34.7e-11483.15Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNF----GAGGGRGGRGG--
        MAEERLTGVVQWFNDSKGFGFIKPDV+GPDLFVHQSSIKSDGYRSLVVGD VE+QIAPGDD KSKAIEVV LDGSSGNRRDNF    G GGGRGGRGG  
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNF----GAGGGRGGRGG--

Query:  ------GGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNR--GGGGGGGGCFTCGEVGHLARDCSQGNS-GGGGGGAGGGACYNCGGFGHMARDC
              GGWRGGDRRNG+SG GG GCYQCGEQGHLARDC+R SNR  GGGGGGGGCFTCGEVGHLARDC +GNS GGGGGG+GGGACYNCGGFGH+ARDC
Subjt:  ------GGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNR--GGGGGGGGCFTCGEVGHLARDCSQGNS-GGGGGGAGGGACYNCGGFGHMARDC

Query:  NRG--GGGGGGGGGGGCFNCGEYGHLARDCQNE-RSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEAA
        NRG  GGG GGGGGGGCFNCGEYGH+ARDCQNE R SGGGGGR+GGGGGGG       +NTCFNCGKSGHFARECP+A+
Subjt:  NRG--GGGGGGGGGGGCFNCGEYGHLARDCQNE-RSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEAA

A0A6J1E5N5 cold shock domain-containing protein 3-like1.3e-11686.57Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG------
        MAEERLTGVVQWFNDSKGFGFIKPDV+GPDLFVHQSSIKSDGYRSLVVGD VE+QIAPGDD KSKAIEVV LDGSSGNRRDNFG GGGRGGRGG      
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG------

Query:  -GGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGGGGGCFTCGEVGHLARDCSQGNS-GGGGGGAGGGACYNCGGFGHMARDCNRGG-GG
         GGWRGGDRRNGSSGAGG GCYQCGEQGHLARDC+RASNRGGGGGGGGCFTCGEVGHLARDC +GNS GGGGGGAGGGACYNCGGFGH+ARDCNRGG GG
Subjt:  -GGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGGGGGCFTCGEVGHLARDCSQGNS-GGGGGGAGGGACYNCGGFGHMARDCNRGG-GG

Query:  GGGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPE
        G GGGGGGCFNCGEYGHLARDCQNE S G GGGR+GGGG          ANTCFNCGKSGHFARECP+
Subjt:  GGGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPE

A0A6J1GAE9 cold shock protein 1-like9.2e-11886.89Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG-----G
        M EERLTGVVQWFNDSKGFGFIKPDV+GPDLFVHQSSIKSDGYRSLVVGD VE+QIA GDD KSKAIEVV LDGSSGNRRDNFG GGGRGGRGG     G
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG-----G

Query:  GWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGG-GGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRGG-GGGG
        GWRGGDRRNGSSGAGG GCYQCGEQGHLARDC+RASNRGGGGG GGGCFTCGEVGHLARDC +GNSGGGGGGAGGG CYNCGGFGH+ARDCNRGG GGG 
Subjt:  GWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGG-GGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRGG-GGGG

Query:  GGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEA
        GGGGGGCFNCGEYGHLARDCQNE  + GGGGR+GGGGGGG       ANTCFNCGKSGHFARECP+A
Subjt:  GGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEA

A0A6J1KVQ4 cold shock domain-containing protein 3-like6.6e-11685.87Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG-----G
        MAEERLTGVVQWFNDSKGFGFIKPDV+GPDLFVHQSSIKSDGYRSLVVGD VE+QIA GDD KSKAIEVV LDGSSGNRRDNFG GGGRGGRGG     G
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGG-----G

Query:  GWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGG-GGGCFTCGEVGHLARDCSQGN-SGGGGGGAGGGACYNCGGFGHMARDCNRG--GGG
        GWRGGDRRNGSSGAGG GCYQCGEQGHLARDC+R SNRGGGGG GGGCFTCGEVGHLARDC +GN  GGGGGGAGGG CYNCGGFGH+ARDCNRG  GGG
Subjt:  GWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGG-GGGCFTCGEVGHLARDCSQGN-SGGGGGGAGGGACYNCGGFGHMARDCNRG--GGG

Query:  GGGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEA
        GGGGGGGGCFNCGEYGHLARDCQNE  +  GGGR+GGGGGGG       ANTCFNCGKSGHFARECP+A
Subjt:  GGGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEA

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 12.8e-4748.3Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNF-GAGGGRGGRG----------
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VE+ I  G D K+KA+ V    G S  + +N  G G  RGG G          
Subjt:  RLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNF-GAGGGRGGRG----------

Query:  --------GGGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASN---RGG-GGGGGGCFTCGEVGHLARDCSQGNSGGGG--GGAGGG--ACYNCGG
                GGG  GG+RR+     GG GCY CG+ GH ARDC+ A N   RG   GG  GC+TCG+VGH+ARDC+Q + G G   G   GG   CY CG 
Subjt:  --------GGGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASN---RGG-GGGGGGCFTCGEVGHLARDCSQGNSGGGG--GGAGGG--ACYNCGG

Query:  FGHMARDCNR----GGGGGGGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGR------FGGGGSANTCFNCGKSGHFARECPEAA
         GH ARDC +    G    GGGG G C++CG  GH+ARDC  +R    G  + GG G   R       GGGG+ N C+ CGK GHFAREC   A
Subjt:  FGHMARDCNR----GGGGGGGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGR------FGGGGSANTCFNCGKSGHFARECPEAA

P27484 Glycine-rich protein 24.1e-3848.85Show/hide
Query:  MAEE---RLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSS--GNRRDNFGAGGGRGGRGGG
        MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VE+++  G D ++KA++V   DG++  G R    G GGG GGRGGG
Subjt:  MAEE---RLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSS--GNRRDNFGAGGGRGGRGGG

Query:  GWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGGGGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRGGGGGGGG
        G+ GG    G  G GG+  Y  G+ G+           GGGGG GG                   GGGGGG GGG     GG+           GGGG G
Subjt:  GWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGGGGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRGGGGGGGG

Query:  GGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFAREC
        GG GCF CGE GH ARDC ++   GGGGGR+GGGGGGG  GGGG    C+ CG+ GHFAREC
Subjt:  GGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFAREC

Q38896 Cold shock domain-containing protein 41.4e-3347.98Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEV-----VPLDGSSGNRRDNFGAGGGRGGRGGGGWR
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VE+ +   +  + KAIEV      P+ G+SG      G+ GGRGG GGGG R
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEV-----VPLDGSSGNRRDNFGAGGGRGGRGGGGWR

Query:  GGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGGGGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRGGGGGGGGGGG
        GG R  GS G G  G                +  RGGGGG   CF CGE GH+AR+CSQG  GGG  G GGG  Y              GGGGGGGGGG 
Subjt:  GGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGGGGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRGGGGGGGGGGG

Query:  GCFNCGEYGHLARDCQNERSSGG
         C++CGE GH ARDC    +SGG
Subjt:  GCFNCGEYGHLARDCQNERSSGG

Q41188 Cold shock protein 23.2e-3550Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGGGGWRGGDRR
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VE+++   ++++ KAI+V   DG+        G+ GGRGG GGG  RGG R 
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGGGGWRGGDRR

Query:  NGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGGGGGCFTCGEVGHLARDCSQGNS--GGGGGGAGGGACYNCGGFGHMARDCNRGGGGGGGGGGGGCF
        +G    GG G Y  G +G            GGG GG  C+ CGE GH+ARDCS+G    GGGGGG GGG  Y  GG G+       GGG GGGGGGG C+
Subjt:  NGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGGGGGCFTCGEVGHLARDCSQGNS--GGGGGGAGGGACYNCGGFGHMARDCNRGGGGGGGGGGGGCF

Query:  NCGEYGHLARDCQNERSSGG
        +CGE GH ARDC    +SGG
Subjt:  NCGEYGHLARDCQNERSSGG

Q94C69 Cold shock domain-containing protein 37.4e-5650.67Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAG------------------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VEY+IA G D K+KAIEV    G S N+++N   G                  
Subjt:  RLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAG------------------

Query:  -GGRGGRGGGGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDC--SRASNRGGGGGGG-GCFTCGEVGHLARDCSQGN-----SGGGGGGAGGGACYNCGG
         GG GG+  GG  GG RR+G  G     CY CG+ GH ARDC  S   N GGGGGGG  C++CGEVGHLA+DC  G+      GGGG G+GG  CY CGG
Subjt:  -GGRGGRGGGGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDC--SRASNRGGGGGGG-GCFTCGEVGHLARDCSQGN-----SGGGGGGAGGGACYNCGG

Query:  FGHMARDCNRGGGGGGGGGGGGCFNCGEYGHLARDCQNERSSGGGGG-----RYGGGG---------GGGRFGGGGSANTCFNCGKSGHFARECPEAA
         GH ARDC + GGG  GGGG  C+ CG  GH+A+ C ++  SGGGGG       GG G         G G  GGGG +N CF CGK GHFAREC   A
Subjt:  FGHMARDCNRGGGGGGGGGGGGCFNCGEYGHLARDCQNERSSGGGGG-----RYGGGG---------GGGRFGGGGSANTCFNCGKSGHFARECPEAA

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 35.2e-5750.67Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAG------------------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VEY+IA G D K+KAIEV    G S N+++N   G                  
Subjt:  RLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAG------------------

Query:  -GGRGGRGGGGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDC--SRASNRGGGGGGG-GCFTCGEVGHLARDCSQGN-----SGGGGGGAGGGACYNCGG
         GG GG+  GG  GG RR+G  G     CY CG+ GH ARDC  S   N GGGGGGG  C++CGEVGHLA+DC  G+      GGGG G+GG  CY CGG
Subjt:  -GGRGGRGGGGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDC--SRASNRGGGGGGG-GCFTCGEVGHLARDCSQGN-----SGGGGGGAGGGACYNCGG

Query:  FGHMARDCNRGGGGGGGGGGGGCFNCGEYGHLARDCQNERSSGGGGG-----RYGGGG---------GGGRFGGGGSANTCFNCGKSGHFARECPEAA
         GH ARDC + GGG  GGGG  C+ CG  GH+A+ C ++  SGGGGG       GG G         G G  GGGG +N CF CGK GHFAREC   A
Subjt:  FGHMARDCNRGGGGGGGGGGGGCFNCGEYGHLARDCQNERSSGGGGG-----RYGGGG---------GGGRFGGGGSANTCFNCGKSGHFARECPEAA

AT2G21060.1 glycine-rich protein 2B9.6e-3547.98Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEV-----VPLDGSSGNRRDNFGAGGGRGGRGGGGWR
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VE+ +   +  + KAIEV      P+ G+SG      G+ GGRGG GGGG R
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEV-----VPLDGSSGNRRDNFGAGGGRGGRGGGGWR

Query:  GGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGGGGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRGGGGGGGGGGG
        GG R  GS G G  G                +  RGGGGG   CF CGE GH+AR+CSQG  GGG  G GGG  Y              GGGGGGGGGG 
Subjt:  GGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGGGGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRGGGGGGGGGGG

Query:  GCFNCGEYGHLARDCQNERSSGG
         C++CGE GH ARDC    +SGG
Subjt:  GCFNCGEYGHLARDCQNERSSGG

AT4G36020.1 cold shock domain protein 12.0e-4848.3Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNF-GAGGGRGGRG----------
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VE+ I  G D K+KA+ V    G S  + +N  G G  RGG G          
Subjt:  RLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNF-GAGGGRGGRG----------

Query:  --------GGGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASN---RGG-GGGGGGCFTCGEVGHLARDCSQGNSGGGG--GGAGGG--ACYNCGG
                GGG  GG+RR+     GG GCY CG+ GH ARDC+ A N   RG   GG  GC+TCG+VGH+ARDC+Q + G G   G   GG   CY CG 
Subjt:  --------GGGWRGGDRRNGSSGAGGAGCYQCGEQGHLARDCSRASN---RGG-GGGGGGCFTCGEVGHLARDCSQGNSGGGG--GGAGGG--ACYNCGG

Query:  FGHMARDCNR----GGGGGGGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGR------FGGGGSANTCFNCGKSGHFARECPEAA
         GH ARDC +    G    GGGG G C++CG  GH+ARDC  +R    G  + GG G   R       GGGG+ N C+ CGK GHFAREC   A
Subjt:  FGHMARDCNR----GGGGGGGGGGGGCFNCGEYGHLARDCQNERSSGGGGGRYGGGGGGGR------FGGGGSANTCFNCGKSGHFARECPEAA

AT4G38680.1 glycine rich protein 22.3e-3650Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGGGGWRGGDRR
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VE+++   ++++ KAI+V   DG+        G+ GGRGG GGG  RGG R 
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGGGGWRGGDRR

Query:  NGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGGGGGCFTCGEVGHLARDCSQGNS--GGGGGGAGGGACYNCGGFGHMARDCNRGGGGGGGGGGGGCF
        +G    GG G Y  G +G            GGG GG  C+ CGE GH+ARDCS+G    GGGGGG GGG  Y  GG G+       GGG GGGGGGG C+
Subjt:  NGSSGAGGAGCYQCGEQGHLARDCSRASNRGGGGGGGGCFTCGEVGHLARDCSQGNS--GGGGGGAGGGACYNCGGFGHMARDCNRGGGGGGGGGGGGCF

Query:  NCGEYGHLARDCQNERSSGG
        +CGE GH ARDC    +SGG
Subjt:  NCGEYGHLARDCQNERSSGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAAGAGAGATTGACTGGTGTGGTTCAGTGGTTCAACGATTCCAAGGGATTTGGCTTCATCAAGCCAGATGTTGATGGCCCAGATCTGTTTGTTCATCAATCCTC
CATTAAATCCGATGGCTACCGGAGCCTCGTCGTCGGAGATCGTGTCGAGTATCAGATCGCTCCGGGCGATGATGACAAATCCAAAGCTATCGAGGTTGTCCCGCTCGATG
GATCTTCCGGAAATCGGAGGGATAACTTTGGTGCTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGCGGCTGGAGGGGCGGCGATAGGCGGAACGGCAGCAGTGGAGCCGGT
GGGGCTGGGTGCTATCAGTGTGGTGAGCAAGGCCATTTGGCTAGGGATTGTTCTCGTGCTAGTAACCGCGGCGGTGGCGGAGGCGGTGGTGGGTGTTTTACCTGCGGTGA
AGTTGGTCACTTAGCGAGGGATTGTTCTCAAGGAAACAGCGGCGGAGGTGGCGGTGGTGCCGGTGGTGGGGCTTGCTATAACTGTGGTGGCTTTGGGCATATGGCTAGGG
ATTGCAATAGGGGTGGTGGAGGCGGCGGCGGCGGCGGCGGTGGTGGTTGTTTTAATTGTGGTGAATATGGACATTTAGCCAGAGATTGCCAGAATGAACGTAGCAGTGGC
GGCGGTGGTGGAAGATATGGAGGTGGTGGTGGAGGTGGCCGGTTTGGTGGCGGCGGCAGCGCAAATACTTGCTTCAATTGTGGGAAATCAGGGCATTTTGCTAGGGAGTG
TCCTGAAGCAGCTTAA
mRNA sequenceShow/hide mRNA sequence
TACAGGTTGAGCGGATTAGGGTTTTGCAAGCGCTAGAAATCCGATAGATCTCGTTGTCTCCGCCTTCTATATATTCCGAAACCCTTCTTCTTCCTTCACTCTCAGTCGCC
ATTTTGCTCTGAAATTTCTTCCTTTTTTGAACATGGCCGAAGAGAGATTGACTGGTGTGGTTCAGTGGTTCAACGATTCCAAGGGATTTGGCTTCATCAAGCCAGATGTT
GATGGCCCAGATCTGTTTGTTCATCAATCCTCCATTAAATCCGATGGCTACCGGAGCCTCGTCGTCGGAGATCGTGTCGAGTATCAGATCGCTCCGGGCGATGATGACAA
ATCCAAAGCTATCGAGGTTGTCCCGCTCGATGGATCTTCCGGAAATCGGAGGGATAACTTTGGTGCTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGCGGCTGGAGGGGCG
GCGATAGGCGGAACGGCAGCAGTGGAGCCGGTGGGGCTGGGTGCTATCAGTGTGGTGAGCAAGGCCATTTGGCTAGGGATTGTTCTCGTGCTAGTAACCGCGGCGGTGGC
GGAGGCGGTGGTGGGTGTTTTACCTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTTCTCAAGGAAACAGCGGCGGAGGTGGCGGTGGTGCCGGTGGTGGGGCTTGCTA
TAACTGTGGTGGCTTTGGGCATATGGCTAGGGATTGCAATAGGGGTGGTGGAGGCGGCGGCGGCGGCGGCGGTGGTGGTTGTTTTAATTGTGGTGAATATGGACATTTAG
CCAGAGATTGCCAGAATGAACGTAGCAGTGGCGGCGGTGGTGGAAGATATGGAGGTGGTGGTGGAGGTGGCCGGTTTGGTGGCGGCGGCAGCGCAAATACTTGCTTCAAT
TGTGGGAAATCAGGGCATTTTGCTAGGGAGTGTCCTGAAGCAGCTTAAGAAGGGGAAAAAGAGTAATAGTATATAATTTTTCCTTTTTATCTTAATATTGTCCTTTTGTT
ATGTTCTTCTTTTGGTGTGTATGGTGGCTATACGTAGCTTACTTGAGAGTTTTTCTTAATCAATTTTTATTCCATGGTTGTTTCGCTCTTCTAGGAGCAAATTTTCTGGT
TAACACATGATATGCTAATTCGGTTATTTGATGCATTTTATTCTAAATTCCTTGTTTTGCTATCATCCCAATG
Protein sequenceShow/hide protein sequence
MAEERLTGVVQWFNDSKGFGFIKPDVDGPDLFVHQSSIKSDGYRSLVVGDRVEYQIAPGDDDKSKAIEVVPLDGSSGNRRDNFGAGGGRGGRGGGGWRGGDRRNGSSGAG
GAGCYQCGEQGHLARDCSRASNRGGGGGGGGCFTCGEVGHLARDCSQGNSGGGGGGAGGGACYNCGGFGHMARDCNRGGGGGGGGGGGGCFNCGEYGHLARDCQNERSSG
GGGGRYGGGGGGGRFGGGGSANTCFNCGKSGHFARECPEAA