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Sed0026112 (gene) of Chayote v1 genome

Gene IDSed0026112
OrganismSechium edule (Chayote v1)
DescriptionCarbamoyl-phosphate synthase small chain
Genome locationLG07:35300494..35303517
RNA-Seq ExpressionSed0026112
SyntenySed0026112
Gene Ontology termsGO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process (biological process)
GO:0006526 - arginine biosynthetic process (biological process)
GO:0006541 - glutamine metabolic process (biological process)
GO:0005951 - carbamoyl-phosphate synthase complex (cellular component)
GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity (molecular function)
InterPro domainsIPR002474 - Carbamoyl-phosphate synthase small subunit, N-terminal domain
IPR036480 - Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035263.1 Carbamoyl-phosphate synthase small chain, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]2.8e-3991.4Show/hide
Query:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        MA RVMDLVSGA+LNCFHFKN N GFVKSRDFT+RCSVPLSS+ +ATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Subjt:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

XP_022947190.1 carbamoyl-phosphate synthase small chain, chloroplastic-like [Cucurbita moschata]2.8e-3991.4Show/hide
Query:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        MA RVMDLVSGA+LNCFHFKN N GFVKSRDFT+RCSVPLSS+ +ATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Subjt:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

XP_023007174.1 carbamoyl-phosphate synthase small chain, chloroplastic-like [Cucurbita maxima]3.0e-3889.25Show/hide
Query:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        MA RVMDLVSGA+LNCFHFKN N GF KSRDFT+RCSVPL S+ +ATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Subjt:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

XP_023532073.1 LOW QUALITY PROTEIN: carbamoyl-phosphate synthase small chain, chloroplastic-like [Cucurbita pepo subsp. pepo]2.8e-3991.4Show/hide
Query:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        MA RVMDLVSGA+LNCFHFKN N GFVKSRDFT+RCSVPLSS+ +ATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Subjt:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

XP_038893406.1 carbamoyl-phosphate synthase small chain, chloroplastic isoform X2 [Benincasa hispida]2.9e-3686.17Show/hide
Query:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSS-NASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        MA RVMDLVSGA+ NCFHFKN   G+VKSRDF++RCSVPLSS + +ATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Subjt:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSS-NASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

TrEMBL top hitse value%identityAlignment
A0A0A0KV57 Glutamine amidotransferase type-1 domain-containing protein3.1e-3686.17Show/hide
Query:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSN-ASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        MA RVMDLVSGA+LNCFHFKNP  G VKSR F++RCSVPLSS+  +ATIDLGERPWKVSDARLVLEDGSIW+AKSFGASGTQVGEVVFNTSLTG
Subjt:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSN-ASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

A0A5D3CV98 Carbamoyl-phosphate synthase small chain3.1e-3685.11Show/hide
Query:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSN-ASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        MA RVMDLVSGA+LNCFHFKNP  G VKSR F++RCSVPLSS+  +ATIDLGERPWKVSDARLVLEDGS+W+AKSFGASGTQVGEVVFNTSLTG
Subjt:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSN-ASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

A0A6J1G657 carbamoyl-phosphate synthase small chain, chloroplastic-like1.3e-3991.4Show/hide
Query:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        MA RVMDLVSGA+LNCFHFKN N GFVKSRDFT+RCSVPLSS+ +ATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Subjt:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

A0A6J1H064 carbamoyl-phosphate synthase small chain, chloroplastic-like2.4e-3686.17Show/hide
Query:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPL-SSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        MA RVMDLVSG +LNCFHFKNP  G  KSRDF++RCSVPL SS+ +ATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Subjt:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPL-SSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

A0A6J1L483 carbamoyl-phosphate synthase small chain, chloroplastic-like1.5e-3889.25Show/hide
Query:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        MA RVMDLVSGA+LNCFHFKN N GF KSRDFT+RCSVPL S+ +ATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
Subjt:  MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

SwissProt top hitse value%identityAlignment
C5BQ30 Carbamoyl-phosphate synthase small chain2.7e-0570.59Show/hide
Query:  ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        A LVLEDGS++R  S GA+G  VGEVVFNTS+TG
Subjt:  ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

Q6YV23 Carbamoyl-phosphate synthase small chain, chloroplastic1.5e-1670.97Show/hide
Query:  VRCSVPLSSNASATI--DLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        VR +  +S   S T+  D  +RPWK+SDARLVLEDGS+W+AKSFGASGTQVGEVVFNTSLTG
Subjt:  VRCSVPLSSNASATI--DLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

Q8DKU5 Carbamoyl-phosphate synthase small chain4.6e-0567.65Show/hide
Query:  ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        A LVL DGS++R  SFGA GT +GEVVFNT +TG
Subjt:  ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

Q8K9Z6 Carbamoyl-phosphate synthase small chain1.3e-0467.65Show/hide
Query:  ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        A LVLEDG+ +  +S GA GT VGEVVFNTS+TG
Subjt:  ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

Q9LVW7 Carbamoyl-phosphate synthase small chain, chloroplastic3.5e-1349.47Show/hide
Query:  MATRVMDLVSGAALNCF-HFKNPNIGFVKSRDFTVRCSV-PLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        MATR +  V   +L+    F     GF   R   +RCS  PL+   S  +   E+PW   +ARLVLEDGSIW AKSFGA GT++ E+VFNTSLTG
Subjt:  MATRVMDLVSGAALNCF-HFKNPNIGFVKSRDFTVRCSV-PLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

Arabidopsis top hitse value%identityAlignment
AT3G27740.1 carbamoyl phosphate synthetase A2.5e-1449.47Show/hide
Query:  MATRVMDLVSGAALNCF-HFKNPNIGFVKSRDFTVRCSV-PLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        MATR +  V   +L+    F     GF   R   +RCS  PL+   S  +   E+PW   +ARLVLEDGSIW AKSFGA GT++ E+VFNTSLTG
Subjt:  MATRVMDLVSGAALNCF-HFKNPNIGFVKSRDFTVRCSV-PLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG

AT3G27740.2 carbamoyl phosphate synthetase A2.5e-1449.47Show/hide
Query:  MATRVMDLVSGAALNCF-HFKNPNIGFVKSRDFTVRCSV-PLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG
        MATR +  V   +L+    F     GF   R   +RCS  PL+   S  +   E+PW   +ARLVLEDGSIW AKSFGA GT++ E+VFNTSLTG
Subjt:  MATRVMDLVSGAALNCF-HFKNPNIGFVKSRDFTVRCSV-PLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCAGAGTTATGGACTTGGTGTCCGGAGCCGCTCTCAATTGTTTCCATTTCAAAAACCCCAACATAGGATTTGTCAAATCTAGGGATTTCACTGTCAGATGCTC
TGTTCCACTCTCTTCCAATGCCTCTGCCACCATTGATTTGGGAGAGCGGCCATGGAAGGTGTCGGATGCTCGTTTGGTGCTTGAAGATGGATCAATCTGGAGGGCCAAGT
CTTTTGGCGCTTCCGGAACCCAAGTTGGTGAAGTGGTTTTCAATACTTCTTTGACTGGTGAAACAGACCAACCGCTCAAGGACGCGGAGAGCAGCAATAATGACGTGGTT
GAACTGCCTCCATTTGGGAGTGAGGAAACTCAAGGCACCAAACCATCCCAAAGGAAACTTGCTCATGAACCGAAAACGGTTAAGGATAAAGTCGACTTAAGAGGGAAGAA
GTCCTTAAACGCTGCACCAAGAAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCAGAGTTATGGACTTGGTGTCCGGAGCCGCTCTCAATTGTTTCCATTTCAAAAACCCCAACATAGGATTTGTCAAATCTAGGGATTTCACTGTCAGATGCTC
TGTTCCACTCTCTTCCAATGCCTCTGCCACCATTGATTTGGGAGAGCGGCCATGGAAGGTGTCGGATGCTCGTTTGGTGCTTGAAGATGGATCAATCTGGAGGGCCAAGT
CTTTTGGCGCTTCCGGAACCCAAGTTGGTGAAGTGGTTTTCAATACTTCTTTGACTGGTGAAACAGACCAACCGCTCAAGGACGCGGAGAGCAGCAATAATGACGTGGTT
GAACTGCCTCCATTTGGGAGTGAGGAAACTCAAGGCACCAAACCATCCCAAAGGAAACTTGCTCATGAACCGAAAACGGTTAAGGATAAAGTCGACTTAAGAGGGAAGAA
GTCCTTAAACGCTGCACCAAGAAAGAAATAG
Protein sequenceShow/hide protein sequence
MATRVMDLVSGAALNCFHFKNPNIGFVKSRDFTVRCSVPLSSNASATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGETDQPLKDAESSNNDVV
ELPPFGSEETQGTKPSQRKLAHEPKTVKDKVDLRGKKSLNAAPRKK