; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0026118 (gene) of Chayote v1 genome

Gene IDSed0026118
OrganismSechium edule (Chayote v1)
DescriptionGag/pol protein
Genome locationLG09:25820503..25821076
RNA-Seq ExpressionSed0026118
SyntenySed0026118
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047411.1 gag/pol protein [Cucumis melo var. makuwa]9.3e-1238.25Show/hide
Query:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE------------------------------------------
        ILV DD +F L EE P A A N  RNVRE +D W  ANEKA +YILAS+SD+LAKK E                                          
Subjt:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE------------------------------------------

Query:  ------NMIVFNPTAILNELQTFESMMKIKDKEGEESVVTKNK-----SSGTTGLGT-----KPKGWTFKEKFEKKKKICGSK
              N I F  T +LNELQ F+++ K K KE E +V T  K     SS  T +GT     K KG T   K  K KK+  SK
Subjt:  ------NMIVFNPTAILNELQTFESMMKIKDKEGEESVVTKNK-----SSGTTGLGT-----KPKGWTFKEKFEKKKKICGSK

KAA0055498.1 gag-pol fusion protein [Cucumis melo var. makuwa]5.8e-1435.16Show/hide
Query:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE------------------------------------------
        +L+ DD +FVL+EECP     N TR +RE ++ W  ANEKAR YIL S+S++LAKK E                                          
Subjt:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE------------------------------------------

Query:  -------NMIVFNPTAILNELQTFESMMKIKDKEGEESVVTKNKS---SGTTGLGTKPKGWTFKEKFEKKKKICGSKNKVNL
               N I +  T +LNELQTFES+MKIK ++GE +V T  +      T+G  + P     K   + KKK  G  NK NL
Subjt:  -------NMIVFNPTAILNELQTFESMMKIKDKEGEESVVTKNKS---SGTTGLGTKPKGWTFKEKFEKKKKICGSKNKVNL

XP_022158791.1 uncharacterized protein LOC111025258 [Momordica charantia]2.2e-1366.67Show/hide
Query:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM
        ILV DD +FVL EECP ALAPN+ + VR+AHD W  ANEKAR+YILAS+SD+L+KK E +
Subjt:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM

XP_038888109.1 uncharacterized protein LOC120078009 [Benincasa hispida]7.1e-1239.46Show/hide
Query:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE------------NMIVFNPTAILNEL-------QTFESMMKI
        IL+ DD  FVLME+CP   APN T+NV+EA++ W   NEKAR+YILAS+S++LAKK E              +   P+A L  +        TF+S+MK+
Subjt:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE------------NMIVFNPTAILNEL-------QTFESMMKI

Query:  KDKEGEESVVTKNK------SSGTTGL----GT----KPKGWTFKEK
        K ++ E +V + +K      +SGT  +    GT    K KG T +E+
Subjt:  KDKEGEESVVTKNK------SSGTTGL----GT----KPKGWTFKEK

XP_038889092.1 uncharacterized protein LOC120079003 [Benincasa hispida]9.3e-1260.66Show/hide
Query:  MILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM
        MILV DD +FVLMEECP +L PN  R VR+ +D W  ANEKA++YILA++SD+L+KK E +
Subjt:  MILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein3.8e-1131.67Show/hide
Query:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM----------------------------------------
        +L+ DD +FVL+EECP   A N TR VRE ++ W  ANEKAR YILAS+S++LAKK E+M                                        
Subjt:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM----------------------------------------

Query:  -------------------------------------------------IVFNPTAILNELQTFESMMKIKDKEGEESVVTKNKS--SGTTGLGTKPKGW
                                                         I +  T +LNELQTFES+MKIK ++GE +V T  +    G+T  GTK    
Subjt:  -------------------------------------------------IVFNPTAILNELQTFESMMKIKDKEGEESVVTKNKS--SGTTGLGTKPKGW

Query:  TFKEKFEKKKKICGSKNKVNL
        +   K  KKKK  G  NK NL
Subjt:  TFKEKFEKKKKICGSKNKVNL

A0A5A7T706 Gag/pol protein2.2e-1133.33Show/hide
Query:  KFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM-----------------------------------------------
        +FVL+EECP   A N TR VREA++ W  ANEKAR YILAS+S++LAKK E+M                                               
Subjt:  KFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM-----------------------------------------------

Query:  -------------------IVFNPTAILNELQTFESMMKIKDKEGEESVVTKNKS---SGTTGLGTKPKGWTFKEKFEKKKKICGSKNKVNL
                           I +  T +LNELQTFES+MKIK ++GE +V T  +       +G    P   +  +K++KKK   G  NK NL
Subjt:  -------------------IVFNPTAILNELQTFESMMKIKDKEGEESVVTKNKS---SGTTGLGTKPKGWTFKEKFEKKKKICGSKNKVNL

A0A5A7UKD1 Gag-pol fusion protein2.8e-1435.16Show/hide
Query:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE------------------------------------------
        +L+ DD +FVL+EECP     N TR +RE ++ W  ANEKAR YIL S+S++LAKK E                                          
Subjt:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE------------------------------------------

Query:  -------NMIVFNPTAILNELQTFESMMKIKDKEGEESVVTKNKS---SGTTGLGTKPKGWTFKEKFEKKKKICGSKNKVNL
               N I +  T +LNELQTFES+MKIK ++GE +V T  +      T+G  + P     K   + KKK  G  NK NL
Subjt:  -------NMIVFNPTAILNELQTFESMMKIKDKEGEESVVTKNKS---SGTTGLGTKPKGWTFKEKFEKKKKICGSKNKVNL

A0A5D3CUK8 Gag/pol protein4.5e-1238.25Show/hide
Query:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE------------------------------------------
        ILV DD +F L EE P A A N  RNVRE +D W  ANEKA +YILAS+SD+LAKK E                                          
Subjt:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLE------------------------------------------

Query:  ------NMIVFNPTAILNELQTFESMMKIKDKEGEESVVTKNK-----SSGTTGLGT-----KPKGWTFKEKFEKKKKICGSK
              N I F  T +LNELQ F+++ K K KE E +V T  K     SS  T +GT     K KG T   K  K KK+  SK
Subjt:  ------NMIVFNPTAILNELQTFESMMKIKDKEGEESVVTKNK-----SSGTTGLGT-----KPKGWTFKEKFEKKKKICGSK

A0A6J1E205 uncharacterized protein LOC1110252581.1e-1366.67Show/hide
Query:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM
        ILV DD +FVL EECP ALAPN+ + VR+AHD W  ANEKAR+YILAS+SD+L+KK E +
Subjt:  ILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACTTGTCAACGATGACAAGAAGTTTGTTCTCATGGAGGAATGTCCTTTGGCACTGGCACCTAATACGACACGAAATGTTCGTGAAGCGCATGATAGTTGGCATAA
TGCTAACGAAAAGGCAAGAATCTATATCTTGGCAAGTGTCTCGGACATTCTGGCCAAAAAACTAGAGAACATGATTGTATTTAACCCCACTGCTATTCTTAATGAACTTC
AAACCTTCGAGTCCATGATGAAAATCAAAGACAAAGAGGGGGAGGAAAGTGTTGTCACCAAGAATAAGAGTTCTGGAACCACGGGTTTAGGGACCAAGCCTAAAGGTTGG
ACCTTCAAGGAAAAGTTTGAAAAGAAGAAGAAGATTTGTGGGAGTAAGAATAAGGTAAATCTCATTTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGATACTTGTCAACGATGACAAGAAGTTTGTTCTCATGGAGGAATGTCCTTTGGCACTGGCACCTAATACGACACGAAATGTTCGTGAAGCGCATGATAGTTGGCATAA
TGCTAACGAAAAGGCAAGAATCTATATCTTGGCAAGTGTCTCGGACATTCTGGCCAAAAAACTAGAGAACATGATTGTATTTAACCCCACTGCTATTCTTAATGAACTTC
AAACCTTCGAGTCCATGATGAAAATCAAAGACAAAGAGGGGGAGGAAAGTGTTGTCACCAAGAATAAGAGTTCTGGAACCACGGGTTTAGGGACCAAGCCTAAAGGTTGG
ACCTTCAAGGAAAAGTTTGAAAAGAAGAAGAAGATTTGTGGGAGTAAGAATAAGGTAAATCTCATTTACTAG
Protein sequenceShow/hide protein sequence
MILVNDDKKFVLMEECPLALAPNTTRNVREAHDSWHNANEKARIYILASVSDILAKKLENMIVFNPTAILNELQTFESMMKIKDKEGEESVVTKNKSSGTTGLGTKPKGW
TFKEKFEKKKKICGSKNKVNLIY