; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0026166 (gene) of Chayote v1 genome

Gene IDSed0026166
OrganismSechium edule (Chayote v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG09:31355516..31358043
RNA-Seq ExpressionSed0026166
SyntenySed0026166
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063823.1 uncharacterized protein E6C27_scaffold827G00420 [Cucumis melo var. makuwa]2.4e-1025.91Show/hide
Query:  MIGSVSTNFSDIMTIGERTKYGVKHGKIADAVGSSTIKKTPTKKKEEEVKDVACMLT--------------SKEELFEILFNH--GYIEMEPFQFDLVMN
        M+GS STNFSD++ IG+  ++GVK+G+I D+  S T +   +KKK+EE+ +++                  S + L ++L +H    +  EP Q    + 
Subjt:  MIGSVSTNFSDIMTIGERTKYGVKHGKIADAVGSSTIKKTPTKKKEEEVKDVACMLT--------------SKEELFEILFNH--GYIEMEPFQFDLVMN

Query:  GYNDDLTCSYHAEAKGNSIDHCL-------CLKIHDSLDSRFLAVSQKMNEYPQEEVQIDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQKKNIPHLHNS
         Y+ +  C YHA A G+S ++C        CL     L  +       +N+ P    + D   E               KI ++     Q+  +    N 
Subjt:  GYNDDLTCSYHAEAKGNSIDHCL-------CLKIHDSLDSRFLAVSQKMNEYPQEEVQIDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQKKNIPHLHNS

Query:  FKFGGVVHLGDQSPTVMVVVKDKEEADPLVYLCPDNFELNNWTMMEL
                      +++V+ ++   + PLVY CP  FELNNW + ++
Subjt:  FKFGGVVHLGDQSPTVMVVVKDKEEADPLVYLCPDNFELNNWTMMEL

KAA0066013.1 uncharacterized protein E6C27_scaffold32G00020 [Cucumis melo var. makuwa]2.4e-1024.56Show/hide
Query:  MIGSVSTNFSDIMTIGERTKYGVKHGKIADAVG--SSTIKKTPTKKKEEEV-------------------------------------------------
        M G+ STNFS+I+ IGER +YG+KHGK+A+A        K T +KKKE EV                                                 
Subjt:  MIGSVSTNFSDIMTIGERTKYGVKHGKIADAVG--SSTIKKTPTKKKEEEV-------------------------------------------------

Query:  --------------------------KDVACMLTSKEELFEILFNHGYIEMEPFQFDLVMNGYNDDLTCSYHAEAKGNSIDHCLCLKIHDSLDSRFLAVS
                                   +V  ++   E LFE LF  GY+  E    D+   G        Y + A  N +     +K H S        +
Subjt:  --------------------------KDVACMLTSKEELFEILFNHGYIEMEPFQFDLVMNGYNDDLTCSYHAEAKGNSIDHCLCLKIHDSLDSRFLAVS

Query:  QKMNEYPQEEVQIDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQKKN----------------IPHLHNSFKFGGV---VHLGD---------QSPTVMV
             Y   +  ++ + +   N  RFGLGYK +  D +R+++++KK                 IP L+++FK  G+    H  D         +S ++  
Subjt:  QKMNEYPQEEVQIDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQKKN----------------IPHLHNSFKFGGV---VHLGD---------QSPTVMV

Query:  VVKDKEEADPLVYLCPDNFELNNWTMMELPTIINEISK
        V ++    D  +Y  PD FELNNW +++LPT   +  K
Subjt:  VVKDKEEADPLVYLCPDNFELNNWTMMELPTIINEISK

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]6.6e-1335.09Show/hide
Query:  IDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQK----------------KNIPHLHNSFKFGGVVHLG-DQSPTVMVVVKDKEEADPLVYLCPDNFELNN
        +D +  +++N  +FGLGYKP++ D++RV   +K                + +P L +SF+  G +H   D+S  V  V +++E+  P VYLCPD FEL+N
Subjt:  IDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQK----------------KNIPHLHNSFKFGGVVHLG-DQSPTVMVVVKDKEEADPLVYLCPDNFELNN

Query:  WTMMELPTIINEIS
        W++++LP+ +N  S
Subjt:  WTMMELPTIINEIS

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]4.3e-0457.41Show/hide
Query:  MIGSVSTNFSDIMTIGERTKYGVKHGKIADAVGS--STIKKTPTKKKEEEVKDV
        MIGS STNFSDIMTIGER +YGV+HG+I        +  K + +KKKE EV+ V
Subjt:  MIGSVSTNFSDIMTIGERTKYGVKHGKIADAVGS--STIKKTPTKKKEEEVKDV

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]8.6e-1333.9Show/hide
Query:  EEVQIDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQK----------------KNIPHLHNSFKFGGVVHLG-DQSPTVMVVVKDKEEADPLVYLCPDNF
        +   +D +  +++N  +FGLGYKP++ D++RV   +K                + +P L +SF+  G++H   D+S  V  V +++E+  P VY CPD F
Subjt:  EEVQIDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQK----------------KNIPHLHNSFKFGGVVHLG-DQSPTVMVVVKDKEEADPLVYLCPDNF

Query:  ELNNWTMMELPTIINEIS
        EL+NW+++ELP+ +N  S
Subjt:  ELNNWTMMELPTIINEIS

XP_022155744.1 uncharacterized protein LOC111022791 [Momordica charantia]2.5e-1234.78Show/hide
Query:  IDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQK----------------KNIPHLHNSFKFGGVVHLG-DQSPTVMVVVKDKEEADPLVYLCPDNFELNN
        +D +  +++N  +FGLGYK ++ D++RV   +K                + +P L +SF+  G +H   D+S  V  V +++E+  P VYLCPD FEL+N
Subjt:  IDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQK----------------KNIPHLHNSFKFGGVVHLG-DQSPTVMVVVKDKEEADPLVYLCPDNFELNN

Query:  WTMMELPTIINEISK
        W+++ELP+ +N   K
Subjt:  WTMMELPTIINEISK

TrEMBL top hitse value%identityAlignment
A0A5A7V6U2 Uncharacterized protein1.1e-1025.91Show/hide
Query:  MIGSVSTNFSDIMTIGERTKYGVKHGKIADAVGSSTIKKTPTKKKEEEVKDVACMLT--------------SKEELFEILFNH--GYIEMEPFQFDLVMN
        M+GS STNFSD++ IG+  ++GVK+G+I D+  S T +   +KKK+EE+ +++                  S + L ++L +H    +  EP Q    + 
Subjt:  MIGSVSTNFSDIMTIGERTKYGVKHGKIADAVGSSTIKKTPTKKKEEEVKDVACMLT--------------SKEELFEILFNH--GYIEMEPFQFDLVMN

Query:  GYNDDLTCSYHAEAKGNSIDHCL-------CLKIHDSLDSRFLAVSQKMNEYPQEEVQIDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQKKNIPHLHNS
         Y+ +  C YHA A G+S ++C        CL     L  +       +N+ P    + D   E               KI ++     Q+  +    N 
Subjt:  GYNDDLTCSYHAEAKGNSIDHCL-------CLKIHDSLDSRFLAVSQKMNEYPQEEVQIDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQKKNIPHLHNS

Query:  FKFGGVVHLGDQSPTVMVVVKDKEEADPLVYLCPDNFELNNWTMMEL
                      +++V+ ++   + PLVY CP  FELNNW + ++
Subjt:  FKFGGVVHLGDQSPTVMVVVKDKEEADPLVYLCPDNFELNNWTMMEL

A0A5D3C619 Gag-pro-like protein1.1e-1024.56Show/hide
Query:  MIGSVSTNFSDIMTIGERTKYGVKHGKIADAVG--SSTIKKTPTKKKEEEV-------------------------------------------------
        M G+ STNFS+I+ IGER +YG+KHGK+A+A        K T +KKKE EV                                                 
Subjt:  MIGSVSTNFSDIMTIGERTKYGVKHGKIADAVG--SSTIKKTPTKKKEEEV-------------------------------------------------

Query:  --------------------------KDVACMLTSKEELFEILFNHGYIEMEPFQFDLVMNGYNDDLTCSYHAEAKGNSIDHCLCLKIHDSLDSRFLAVS
                                   +V  ++   E LFE LF  GY+  E    D+   G        Y + A  N +     +K H S        +
Subjt:  --------------------------KDVACMLTSKEELFEILFNHGYIEMEPFQFDLVMNGYNDDLTCSYHAEAKGNSIDHCLCLKIHDSLDSRFLAVS

Query:  QKMNEYPQEEVQIDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQKKN----------------IPHLHNSFKFGGV---VHLGD---------QSPTVMV
             Y   +  ++ + +   N  RFGLGYK +  D +R+++++KK                 IP L+++FK  G+    H  D         +S ++  
Subjt:  QKMNEYPQEEVQIDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQKKN----------------IPHLHNSFKFGGV---VHLGD---------QSPTVMV

Query:  VVKDKEEADPLVYLCPDNFELNNWTMMELPTIINEISK
        V ++    D  +Y  PD FELNNW +++LPT   +  K
Subjt:  VVKDKEEADPLVYLCPDNFELNNWTMMELPTIINEISK

A0A6J1D099 Ribonuclease H3.2e-1335.09Show/hide
Query:  IDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQK----------------KNIPHLHNSFKFGGVVHLG-DQSPTVMVVVKDKEEADPLVYLCPDNFELNN
        +D +  +++N  +FGLGYKP++ D++RV   +K                + +P L +SF+  G +H   D+S  V  V +++E+  P VYLCPD FEL+N
Subjt:  IDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQK----------------KNIPHLHNSFKFGGVVHLG-DQSPTVMVVVKDKEEADPLVYLCPDNFELNN

Query:  WTMMELPTIINEIS
        W++++LP+ +N  S
Subjt:  WTMMELPTIINEIS

A0A6J1D099 Ribonuclease H2.1e-0457.41Show/hide
Query:  MIGSVSTNFSDIMTIGERTKYGVKHGKIADAVGS--STIKKTPTKKKEEEVKDV
        MIGS STNFSDIMTIGER +YGV+HG+I        +  K + +KKKE EV+ V
Subjt:  MIGSVSTNFSDIMTIGERTKYGVKHGKIADAVGS--STIKKTPTKKKEEEVKDV

A0A6J1D099 Ribonuclease H4.2e-1333.9Show/hide
Query:  EEVQIDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQK----------------KNIPHLHNSFKFGGVVHLG-DQSPTVMVVVKDKEEADPLVYLCPDNF
        +   +D +  +++N  +FGLGYKP++ D++RV   +K                + +P L +SF+  G++H   D+S  V  V +++E+  P VY CPD F
Subjt:  EEVQIDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQK----------------KNIPHLHNSFKFGGVVHLG-DQSPTVMVVVKDKEEADPLVYLCPDNF

Query:  ELNNWTMMELPTIINEIS
        EL+NW+++ELP+ +N  S
Subjt:  ELNNWTMMELPTIINEIS

A0A6J1DR66 uncharacterized protein LOC1110227911.2e-1234.78Show/hide
Query:  IDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQK----------------KNIPHLHNSFKFGGVVHLG-DQSPTVMVVVKDKEEADPLVYLCPDNFELNN
        +D +  +++N  +FGLGYK ++ D++RV   +K                + +P L +SF+  G +H   D+S  V  V +++E+  P VYLCPD FEL+N
Subjt:  IDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQK----------------KNIPHLHNSFKFGGVVHLG-DQSPTVMVVVKDKEEADPLVYLCPDNFELNN

Query:  WTMMELPTIINEISK
        W+++ELP+ +N   K
Subjt:  WTMMELPTIINEISK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGGGAGTGTCTCAACGAATTTTTCAGACATAATGACAATTGGTGAGAGGACTAAATATGGAGTAAAGCATGGAAAAATAGCTGATGCAGTTGGGTCATCGACGAT
AAAAAAAACACCTACAAAGAAAAAAGAGGAAGAGGTAAAAGATGTTGCATGTATGCTGACATCCAAGGAGGAGCTTTTTGAAATCTTGTTTAATCATGGATATATTGAAA
TGGAACCTTTTCAATTTGATTTAGTTATGAATGGTTATAATGACGATTTAACTTGCTCATACCATGCTGAGGCAAAAGGCAATTCTATTGACCACTGTTTGTGCTTAAAA
ATCCATGATTCGTTGGATTCACGCTTTTTGGCAGTCTCTCAAAAGATGAACGAATATCCTCAAGAGGAAGTTCAAATTGATGCGGTGGAAGAGCTTTCTCGAAACATGAT
GAGGTTTGGTCTAGGATATAAACCAAATAAAATAGATATGGTTAGAGTTCACAAACAGCAAAAAAAGAATATTCCCCATCTTCATAATTCTTTCAAGTTTGGTGGTGTAG
TCCATCTAGGAGATCAAAGCCCAACAGTTATGGTCGTGGTTAAAGATAAAGAAGAAGCAGATCCTTTGGTCTACTTATGCCCAGATAATTTTGAGCTTAACAACTGGACC
ATGATGGAACTTCCAACTATTATAAATGAAATTTCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCGGGAGTGTCTCAACGAATTTTTCAGACATAATGACAATTGGTGAGAGGACTAAATATGGAGTAAAGCATGGAAAAATAGCTGATGCAGTTGGGTCATCGACGAT
AAAAAAAACACCTACAAAGAAAAAAGAGGAAGAGGTAAAAGATGTTGCATGTATGCTGACATCCAAGGAGGAGCTTTTTGAAATCTTGTTTAATCATGGATATATTGAAA
TGGAACCTTTTCAATTTGATTTAGTTATGAATGGTTATAATGACGATTTAACTTGCTCATACCATGCTGAGGCAAAAGGCAATTCTATTGACCACTGTTTGTGCTTAAAA
ATCCATGATTCGTTGGATTCACGCTTTTTGGCAGTCTCTCAAAAGATGAACGAATATCCTCAAGAGGAAGTTCAAATTGATGCGGTGGAAGAGCTTTCTCGAAACATGAT
GAGGTTTGGTCTAGGATATAAACCAAATAAAATAGATATGGTTAGAGTTCACAAACAGCAAAAAAAGAATATTCCCCATCTTCATAATTCTTTCAAGTTTGGTGGTGTAG
TCCATCTAGGAGATCAAAGCCCAACAGTTATGGTCGTGGTTAAAGATAAAGAAGAAGCAGATCCTTTGGTCTACTTATGCCCAGATAATTTTGAGCTTAACAACTGGACC
ATGATGGAACTTCCAACTATTATAAATGAAATTTCAAAGTAA
Protein sequenceShow/hide protein sequence
MIGSVSTNFSDIMTIGERTKYGVKHGKIADAVGSSTIKKTPTKKKEEEVKDVACMLTSKEELFEILFNHGYIEMEPFQFDLVMNGYNDDLTCSYHAEAKGNSIDHCLCLK
IHDSLDSRFLAVSQKMNEYPQEEVQIDAVEELSRNMMRFGLGYKPNKIDMVRVHKQQKKNIPHLHNSFKFGGVVHLGDQSPTVMVVVKDKEEADPLVYLCPDNFELNNWT
MMELPTIINEISK