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Sed0026173 (gene) of Chayote v1 genome

Gene IDSed0026173
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S20
Genome locationLG05:37440411..37443056
RNA-Seq ExpressionSed0026173
SyntenySed0026173
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR002583 - Ribosomal protein S20
IPR036510 - Ribosomal protein S20 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607892.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.4e-5773.91Show/hide
Query:  MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKS
        MAA S +CFALPSKF NLS                LKSLSFSSNIS SAFSNGC+SMS AQRPLRY VVCEA               AEKRR YNKARKS
Subjt:  MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKS

Query:  EIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA
        EI+TR+KKA+EALDDLKKKPEAQSEEVLPIEKLI EA+SVIDKAVKVGTL+RNTAA RKSRLARRKKAVEI HGWYTPASPAAA
Subjt:  EIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA

XP_022935732.1 30S ribosomal protein S20, chloroplastic-like [Cucurbita moschata]3.2e-5673.08Show/hide
Query:  AAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA--------------AEKRRLYNKARKSEI
        A   I+CFALPSKF NLS                L+SLSFSSN+S SAFSNGC+S+SKAQRP RY VVCEA              AEKRR+YNKARKSEI
Subjt:  AAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA--------------AEKRRLYNKARKSEI

Query:  KTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA
        KTR+KK +EALDDLKKKPEAQSEEVLPIEKLI EAFSVIDKAVKVGTL+RNTAARRKSRLARRKKAVEI HGWYTPASPAAA
Subjt:  KTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA

XP_022941386.1 30S ribosomal protein S20, chloroplastic [Cucurbita moschata]8.4e-5773.91Show/hide
Query:  MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKS
        MAA S +CFALPSKF NLS                LKSLSFSSNIS SAFSNGC+SMS AQRPLRY VVCEA               AEKRR YNKARKS
Subjt:  MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKS

Query:  EIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA
        EI+TR+KKA+EALDDLKKKPEAQSEEVLPIEKLI EA+SVIDKAVKVGTL+RNTAA RKSRLARRKKAVEI HGWYTPASPAAA
Subjt:  EIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA

XP_022976587.1 30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima]3.2e-5673.08Show/hide
Query:  AAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA--------------AEKRRLYNKARKSEI
        A   I+CFALPSKF NLS                L+SLSFSSN+S SAFSNGC+S+SKAQRP RY VVCEA              AEKRR+YNKARKSEI
Subjt:  AAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA--------------AEKRRLYNKARKSEI

Query:  KTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA
        KTR+KK +EALDDLKKKPEAQSEEVLPIEKLI EAFSVIDKAVKVGTL+RNTAARRKSRLARRKKAVEI HGWYTPASPAAA
Subjt:  KTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA

XP_022981947.1 30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima]1.2e-5571.74Show/hide
Query:  MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKS
        MAA S +CFALPSKF NLS                L+SLSFSSN+S SAFS+GC+SMS AQRPLRY VVCEA               AEKRR YNKARKS
Subjt:  MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKS

Query:  EIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA
        EI+TR+KKA+EALDDLKKKPEAQSEEVLP+EKLI EA+SVIDKAVKVGTL+RNTAA RKSRLARRKKAVEI HGWYTPASPAAA
Subjt:  EIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA

TrEMBL top hitse value%identityAlignment
A0A6J1CG14 30S ribosomal protein S20, chloroplastic5.0e-5571.2Show/hide
Query:  MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKS
        MAA +ITCF++ SKF NLS                LKSL+FSSN+S  AFSNGC+SMS+AQRPLRY VVCEA               AEKRR+YNKARKS
Subjt:  MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKS

Query:  EIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA
        EIKTR+KK LEALDDLKKKPEAQSEEVL IEKLI EA+SVIDKAVKVGTL+RNTAARRKSRLARRKKAVEI HGWY PASPAAA
Subjt:  EIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA

A0A6J1F6F1 30S ribosomal protein S20, chloroplastic-like1.5e-5673.08Show/hide
Query:  AAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA--------------AEKRRLYNKARKSEI
        A   I+CFALPSKF NLS                L+SLSFSSN+S SAFSNGC+S+SKAQRP RY VVCEA              AEKRR+YNKARKSEI
Subjt:  AAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA--------------AEKRRLYNKARKSEI

Query:  KTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA
        KTR+KK +EALDDLKKKPEAQSEEVLPIEKLI EAFSVIDKAVKVGTL+RNTAARRKSRLARRKKAVEI HGWYTPASPAAA
Subjt:  KTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA

A0A6J1FKZ1 30S ribosomal protein S20, chloroplastic4.1e-5773.91Show/hide
Query:  MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKS
        MAA S +CFALPSKF NLS                LKSLSFSSNIS SAFSNGC+SMS AQRPLRY VVCEA               AEKRR YNKARKS
Subjt:  MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKS

Query:  EIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA
        EI+TR+KKA+EALDDLKKKPEAQSEEVLPIEKLI EA+SVIDKAVKVGTL+RNTAA RKSRLARRKKAVEI HGWYTPASPAAA
Subjt:  EIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA

A0A6J1IG57 30S ribosomal protein S20, chloroplastic-like1.5e-5673.08Show/hide
Query:  AAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA--------------AEKRRLYNKARKSEI
        A   I+CFALPSKF NLS                L+SLSFSSN+S SAFSNGC+S+SKAQRP RY VVCEA              AEKRR+YNKARKSEI
Subjt:  AAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA--------------AEKRRLYNKARKSEI

Query:  KTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA
        KTR+KK +EALDDLKKKPEAQSEEVLPIEKLI EAFSVIDKAVKVGTL+RNTAARRKSRLARRKKAVEI HGWYTPASPAAA
Subjt:  KTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA

A0A6J1IVC5 30S ribosomal protein S20, chloroplastic-like5.8e-5671.74Show/hide
Query:  MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKS
        MAA S +CFALPSKF NLS                L+SLSFSSN+S SAFS+GC+SMS AQRPLRY VVCEA               AEKRR YNKARKS
Subjt:  MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKS

Query:  EIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA
        EI+TR+KKA+EALDDLKKKPEAQSEEVLP+EKLI EA+SVIDKAVKVGTL+RNTAA RKSRLARRKKAVEI HGWYTPASPAAA
Subjt:  EIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA

SwissProt top hitse value%identityAlignment
B0C2C8 30S ribosomal protein S202.0e-0848.15Show/hide
Query:  AEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKA
        AE+ RL NKA KS IKT  K+   A+DD K  P    +++  I+  ++  +S IDKAVKVG  +RNT AR+K+ LAR  KA
Subjt:  AEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKA

B1XHW6 30S ribosomal protein S207.5e-0842.68Show/hide
Query:  EAAEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKK
        + AE+ RL NK+ KS +KT  KK L+A++     P A ++     +K ++  +S IDKAVK G  + NTAAR+K+RLA+  K
Subjt:  EAAEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKK

B7KG02 30S ribosomal protein S201.3e-0741.67Show/hide
Query:  EAAEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAV
        + AE+ RL NK+ KS +KT +KK   A++D K  P  ++++   +++ ++ A+S IDKAVK   L+RN  AR+KS+LA   K V
Subjt:  EAAEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAV

P82130 30S ribosomal protein S20, chloroplastic7.2e-3553.76Show/hide
Query:  MAAPSITCFALPSK----------FTNLSLKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKSEIKTRI
        MA  S  C ++ SK          F N SLK L+FS+N+S   FS GC S+   QR   + VVCE                AE RRL NKARKSE+KTR+
Subjt:  MAAPSITCFALPSK----------FTNLSLKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEA---------------AEKRRLYNKARKSEIKTRI

Query:  KKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPA
        +K  EALD LKKK  A +EE++PI+ LI EA+S IDKAV  GTL+RNTAARRKSRLAR KK VEI HGWYTP+
Subjt:  KKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPA

Q9ASV6 30S ribosomal protein S20, chloroplastic4.6e-3450.29Show/hide
Query:  MAAPSITCFALPSKFTNLSLKSLSFSSNISDSAFSNGCVSMSK----AQRPLRYFVVCEA----------------AEKRRLYNKARKSEIKTRIKKALE
        ++   I+C +  S F+N    S + SS++S S   + CV+ S      Q+P+R  +VCEA                AEKRR+YNK++KSE +TR+KK LE
Subjt:  MAAPSITCFALPSKFTNLSLKSLSFSSNISDSAFSNGCVSMSK----AQRPLRYFVVCEA----------------AEKRRLYNKARKSEIKTRIKKALE

Query:  ALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA
        AL+ LKKK +AQ++E++ +EKLI EA+S IDKAVKV  L++NT ARRKSRLARRKKAVEI HGWY P + AAA
Subjt:  ALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA

Arabidopsis top hitse value%identityAlignment
AT3G15190.1 chloroplast 30S ribosomal protein S20, putative3.3e-3550.29Show/hide
Query:  MAAPSITCFALPSKFTNLSLKSLSFSSNISDSAFSNGCVSMSK----AQRPLRYFVVCEA----------------AEKRRLYNKARKSEIKTRIKKALE
        ++   I+C +  S F+N    S + SS++S S   + CV+ S      Q+P+R  +VCEA                AEKRR+YNK++KSE +TR+KK LE
Subjt:  MAAPSITCFALPSKFTNLSLKSLSFSSNISDSAFSNGCVSMSK----AQRPLRYFVVCEA----------------AEKRRLYNKARKSEIKTRIKKALE

Query:  ALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA
        AL+ LKKK +AQ++E++ +EKLI EA+S IDKAVKV  L++NT ARRKSRLARRKKAVEI HGWY P + AAA
Subjt:  ALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCACCTTCAATTACTTGCTTCGCTCTTCCTTCTAAGTTCACAAATCTTTCCCTCAAATCTCTCAGTTTCTCCTCCAACATTTCAGATTCTGCCTTCTCCAATGG
GTGCGTGTCCATGAGTAAAGCTCAGAGGCCACTTCGTTACTTTGTGGTTTGCGAGGCGGCTGAGAAACGGCGGCTTTACAACAAAGCCAGGAAATCTGAAATCAAAACCA
GGATCAAGAAGGCTTTGGAAGCTTTGGATGACCTCAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCTTGCCGATCGAGAAGCTCATCACAGAAGCATTCTCAGTGATC
GACAAAGCCGTGAAAGTGGGAACATTGTACCGGAACACTGCAGCACGTCGAAAATCTCGGCTTGCCAGACGAAAGAAAGCTGTAGAAATCCAGCATGGATGGTACACCCC
TGCTTCACCAGCAGCTGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCACCTTCAATTACTTGCTTCGCTCTTCCTTCTAAGTTCACAAATCTTTCCCTCAAATCTCTCAGTTTCTCCTCCAACATTTCAGATTCTGCCTTCTCCAATGG
GTGCGTGTCCATGAGTAAAGCTCAGAGGCCACTTCGTTACTTTGTGGTTTGCGAGGCGGCTGAGAAACGGCGGCTTTACAACAAAGCCAGGAAATCTGAAATCAAAACCA
GGATCAAGAAGGCTTTGGAAGCTTTGGATGACCTCAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCTTGCCGATCGAGAAGCTCATCACAGAAGCATTCTCAGTGATC
GACAAAGCCGTGAAAGTGGGAACATTGTACCGGAACACTGCAGCACGTCGAAAATCTCGGCTTGCCAGACGAAAGAAAGCTGTAGAAATCCAGCATGGATGGTACACCCC
TGCTTCACCAGCAGCTGCCTAA
Protein sequenceShow/hide protein sequence
MAAPSITCFALPSKFTNLSLKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEAAEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVI
DKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA