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Sed0026178 (gene) of Chayote v1 genome

Gene IDSed0026178
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG01:56085578..56087103
RNA-Seq ExpressionSed0026178
SyntenySed0026178
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG53376.1 hypothetical protein EZV62_022545 [Acer yangbiense]1.1e-2443.94Show/hide
Query:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG
        RV +  PW F N+L+V E  +G+  VSKL F  + FWV++HD+P  C + + AK L K +G+ V   +E  +   GKF+ +KV IDI +PL+R +K+K G
Subjt:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG

Query:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC
           E   V + YEKLP+FC  CGR+G+ +K+C
Subjt:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC

TXG57113.1 hypothetical protein EZV62_018426 [Acer yangbiense]7.8e-2640.51Show/hide
Query:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG
        RV+   PW F N+L+V E   G   +SKL F  + FWV++HD+P  C + + AK L + +G+ V    E  +   GKF+R+KV IDI +PL+R +++K G
Subjt:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG

Query:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC----SFVVIGEGVPFSFGEELREPLS
           E   V + YE+LPEFC  CG+IGH +K+C    +     EG P  FG  L+ P++
Subjt:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC----SFVVIGEGVPFSFGEELREPLS

TXG57142.1 hypothetical protein EZV62_018455 [Acer yangbiense]3.3e-2438.22Show/hide
Query:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG
        RV+   PW F N+L+V E+  G   +++L F  + FWV++H++P  C + K AK L + +G+ V   +E  +   GK++R+KV IDI +PL+R +++K G
Subjt:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG

Query:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC----SFVVIGEGVPFSFGEELREPL
           E   V + YE+LPEFC  CG+IGH +K C    +  ++ EG    FG  L+ P+
Subjt:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC----SFVVIGEGVPFSFGEELREPL

TXG73549.1 hypothetical protein EZV62_002128 [Acer yangbiense]1.9e-2437.58Show/hide
Query:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG
        RV++  PW F N+L+  E   G   +SKL F  + FW+++H+VP  C + + A+ L   +G+ V   +E  +   GK++R+KV IDI +PL+R ++ K G
Subjt:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG

Query:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIG----EGVPFSFGEELREPL
           E   V + YE+LP+FC  CGRIGH +K+C   V      +G P  +G  L+ P+
Subjt:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIG----EGVPFSFGEELREPL

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]2.9e-2834.75Show/hide
Query:  ISAAKRVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAI
        +S   RV  + PW F+ +LLV  S +   +   ++F F AFW+++H++P  C S + A  LG  +GD    + +G     G F+R++V ID+ +PLRR I
Subjt:  ISAAKRVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAI

Query:  KIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCS--FVVIGEGVPFSFGEELREPL-----------SFFRG---DRGQAVDHGMGGRGRGRGRGY
        K+K+    ++ W  + YEKLP+FC  CG+IGHS ++C     V+    P  +G+ LR  L            F+RG    RG  V+ G GGRG       
Subjt:  KIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCS--FVVIGEGVPFSFGEELREPL-----------SFFRG---DRGQAVDHGMGGRGRGRGRGY

Query:  GWRQVSQNLRDEMGRNDIHHRREEWARQPKPYPEKV
         WR+  +N RD  G    H R  E      P  E V
Subjt:  GWRQVSQNLRDEMGRNDIHHRREEWARQPKPYPEKV

TrEMBL top hitse value%identityAlignment
A0A2Z6NZV1 Uncharacterized protein3.5e-2443.8Show/hide
Query:  AKRVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIK
        A  V    PW FD  LL+   +SG+++ S LD     FWVR++D+P    SE  AK LG +MG+F   D + D    G+FLRLK ++D+R+PL+R  KIK
Subjt:  AKRVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIK

Query:  SGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFV
             +  WV   YE+LP FC  CG+IGH +K+C  V
Subjt:  SGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFV

A0A5C7HB59 Uncharacterized protein5.5e-2543.94Show/hide
Query:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG
        RV +  PW F N+L+V E  +G+  VSKL F  + FWV++HD+P  C + + AK L K +G+ V   +E  +   GKF+ +KV IDI +PL+R +K+K G
Subjt:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG

Query:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC
           E   V + YEKLP+FC  CGR+G+ +K+C
Subjt:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC

A0A5C7HJ97 CCHC-type domain-containing protein3.8e-2640.51Show/hide
Query:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG
        RV+   PW F N+L+V E   G   +SKL F  + FWV++HD+P  C + + AK L + +G+ V    E  +   GKF+R+KV IDI +PL+R +++K G
Subjt:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG

Query:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC----SFVVIGEGVPFSFGEELREPLS
           E   V + YE+LPEFC  CG+IGH +K+C    +     EG P  FG  L+ P++
Subjt:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC----SFVVIGEGVPFSFGEELREPLS

A0A5C7IWT1 CCHC-type domain-containing protein9.3e-2537.58Show/hide
Query:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG
        RV++  PW F N+L+  E   G   +SKL F  + FW+++H+VP  C + + A+ L   +G+ V   +E  +   GK++R+KV IDI +PL+R ++ K G
Subjt:  RVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAIKIKSG

Query:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIG----EGVPFSFGEELREPL
           E   V + YE+LP+FC  CGRIGH +K+C   V      +G P  +G  L+ P+
Subjt:  TMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIG----EGVPFSFGEELREPL

A0A6J1D765 uncharacterized protein LOC1110179021.4e-2834.75Show/hide
Query:  ISAAKRVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAI
        +S   RV  + PW F+ +LLV  S +   +   ++F F AFW+++H++P  C S + A  LG  +GD    + +G     G F+R++V ID+ +PLRR I
Subjt:  ISAAKRVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRAI

Query:  KIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCS--FVVIGEGVPFSFGEELREPL-----------SFFRG---DRGQAVDHGMGGRGRGRGRGY
        K+K+    ++ W  + YEKLP+FC  CG+IGHS ++C     V+    P  +G+ LR  L            F+RG    RG  V+ G GGRG       
Subjt:  KIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCS--FVVIGEGVPFSFGEELREPL-----------SFFRG---DRGQAVDHGMGGRGRGRGRGY

Query:  GWRQVSQNLRDEMGRNDIHHRREEWARQPKPYPEKV
         WR+  +N RD  G    H R  E      P  E V
Subjt:  GWRQVSQNLRDEMGRNDIHHRREEWARQPKPYPEKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTTGAGCTTGATGATAAGGTTATTGCGGATTTCAGCAGCGAAGAGAGTGTTTGAGGCTAGCCCCTGGATTTTTGACAATGCTCTCTTGGTCTTTGAGTCAATGAG
CGGGGATAAGAGAGTATCGAAGCTCGATTTTGGCTTTTCGGCTTTCTGGGTTAGGCTTCATGATGTCCCACCGGCCTGTCATTCTGAAAAATGTGCTAAAGGATTAGGGA
AATTGATGGGGGATTTTGTGGGATGGGATAATGAAGGGGATAAAAGAAATAGGGGAAAGTTCCTAAGATTGAAGGTGAATATTGACATTAGGCAACCATTAAGGAGAGCT
ATAAAAATTAAGAGTGGTACCATGGCTGAGGAGAAATGGGTTAGAATCTCCTATGAGAAGCTTCCTGAATTCTGTTCAGGGTGTGGGAGAATTGGTCACTCAGTTAAAAA
ATGCAGCTTCGTGGTGATTGGGGAAGGAGTCCCGTTTTCTTTTGGTGAGGAGCTTCGTGAACCTCTGAGCTTCTTCAGAGGGGATCGTGGTCAGGCGGTTGACCATGGGA
TGGGAGGTCGAGGGAGAGGAAGGGGAAGGGGCTATGGTTGGAGGCAGGTATCACAAAATCTCCGAGATGAAATGGGGAGGAACGATATTCATCACAGAAGAGAGGAGTGG
GCTCGCCAGCCGAAGCCCTATCCGGAGAAGGTTAAAGGGTGCAGCAACGGCTCACCGACGACGAATTCTGTGGGGAAGGAAGCTTCGGCGTCCTGTCAAAATCAAAGTCA
GAAGGGGGCGGTGGAGGTGCAGAGAAAAGAGCCAGCCAGGGCTTCAGGTAGTACGGGGGACTTATTGGAATTGGAAATATTGCAGAAAGTTATCGCTGAGTCGGCTAAAG
AAGCAGGAAGTGGGCCTAATGGGCTTCAACGAGTTGAGGATAAGGTGGGTAATGGTCAGAAGGTGGAAAATGGGGCAAAAATCGTTAGTGGGCCAATTGTAATGGATATT
TCAACAGGGATGGAGAATTTTAAAGAGGGTGTTGGGCCAGTTAGTATTAAAGAAGATCGGGGAGATGGTTGTCGTAGTAGATGTAAGACAAGTATTGATAAAAAGGGAAA
GGGGATTTGTATAGATGCTGAGACATATGGGTTTGAGGAGCAGACGACTCTTAAGAAGTTTGAGGCTATAGCGGTTAAGGAATCGAATGGGAATGTTAAGGTCGATAATA
AAGATATCTCTAAAAGGGAAGAGGAAGTTGAGGCCGTTATTAAGGATCAGCCGCTATCTTTAGTGGCGGGTTATGGGACGGAAGTTTTGAGAGCGAAGACGGGTGGGGGG
AAATGGAAGTGTAGAGCAAGGCTTGGAGATAGTAAAGATTGCTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTTTGAGCTTGATGATAAGGTTATTGCGGATTTCAGCAGCGAAGAGAGTGTTTGAGGCTAGCCCCTGGATTTTTGACAATGCTCTCTTGGTCTTTGAGTCAATGAG
CGGGGATAAGAGAGTATCGAAGCTCGATTTTGGCTTTTCGGCTTTCTGGGTTAGGCTTCATGATGTCCCACCGGCCTGTCATTCTGAAAAATGTGCTAAAGGATTAGGGA
AATTGATGGGGGATTTTGTGGGATGGGATAATGAAGGGGATAAAAGAAATAGGGGAAAGTTCCTAAGATTGAAGGTGAATATTGACATTAGGCAACCATTAAGGAGAGCT
ATAAAAATTAAGAGTGGTACCATGGCTGAGGAGAAATGGGTTAGAATCTCCTATGAGAAGCTTCCTGAATTCTGTTCAGGGTGTGGGAGAATTGGTCACTCAGTTAAAAA
ATGCAGCTTCGTGGTGATTGGGGAAGGAGTCCCGTTTTCTTTTGGTGAGGAGCTTCGTGAACCTCTGAGCTTCTTCAGAGGGGATCGTGGTCAGGCGGTTGACCATGGGA
TGGGAGGTCGAGGGAGAGGAAGGGGAAGGGGCTATGGTTGGAGGCAGGTATCACAAAATCTCCGAGATGAAATGGGGAGGAACGATATTCATCACAGAAGAGAGGAGTGG
GCTCGCCAGCCGAAGCCCTATCCGGAGAAGGTTAAAGGGTGCAGCAACGGCTCACCGACGACGAATTCTGTGGGGAAGGAAGCTTCGGCGTCCTGTCAAAATCAAAGTCA
GAAGGGGGCGGTGGAGGTGCAGAGAAAAGAGCCAGCCAGGGCTTCAGGTAGTACGGGGGACTTATTGGAATTGGAAATATTGCAGAAAGTTATCGCTGAGTCGGCTAAAG
AAGCAGGAAGTGGGCCTAATGGGCTTCAACGAGTTGAGGATAAGGTGGGTAATGGTCAGAAGGTGGAAAATGGGGCAAAAATCGTTAGTGGGCCAATTGTAATGGATATT
TCAACAGGGATGGAGAATTTTAAAGAGGGTGTTGGGCCAGTTAGTATTAAAGAAGATCGGGGAGATGGTTGTCGTAGTAGATGTAAGACAAGTATTGATAAAAAGGGAAA
GGGGATTTGTATAGATGCTGAGACATATGGGTTTGAGGAGCAGACGACTCTTAAGAAGTTTGAGGCTATAGCGGTTAAGGAATCGAATGGGAATGTTAAGGTCGATAATA
AAGATATCTCTAAAAGGGAAGAGGAAGTTGAGGCCGTTATTAAGGATCAGCCGCTATCTTTAGTGGCGGGTTATGGGACGGAAGTTTTGAGAGCGAAGACGGGTGGGGGG
AAATGGAAGTGTAGAGCAAGGCTTGGAGATAGTAAAGATTGCTCCTAG
Protein sequenceShow/hide protein sequence
MCLSLMIRLLRISAAKRVFEASPWIFDNALLVFESMSGDKRVSKLDFGFSAFWVRLHDVPPACHSEKCAKGLGKLMGDFVGWDNEGDKRNRGKFLRLKVNIDIRQPLRRA
IKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIGEGVPFSFGEELREPLSFFRGDRGQAVDHGMGGRGRGRGRGYGWRQVSQNLRDEMGRNDIHHRREEW
ARQPKPYPEKVKGCSNGSPTTNSVGKEASASCQNQSQKGAVEVQRKEPARASGSTGDLLELEILQKVIAESAKEAGSGPNGLQRVEDKVGNGQKVENGAKIVSGPIVMDI
STGMENFKEGVGPVSIKEDRGDGCRSRCKTSIDKKGKGICIDAETYGFEEQTTLKKFEAIAVKESNGNVKVDNKDISKREEEVEAVIKDQPLSLVAGYGTEVLRAKTGGG
KWKCRARLGDSKDCS