CuGenDBv2

Gene ID	Sed0026190
Organism	Sechium edule (Chayote v1)
Description	S4 RNA-binding domain-containing protein
Genome location	LG04:30623321..30629634
RNA-Seq Expression	Sed0026190
Synteny	Sed0026190
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR017506 - Photosystem II S4 IPR036986 - RNA-binding S4 domain superfamily IPR040591 - YlmH, putative RNA-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6600381.1 hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia]

7.9e-150

87.31

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Query:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLH
        MAA T SIGALWSLRRAA  SSSFR  L +NL  +SFH ARF   PSSPL +SG+CQL QAVKGDIDVLLNGV DKGVIVDVKHILVM KRSLSRREVLH
Subjt:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLH

Query:  TNFLTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVV
        TNFLTPPVVKESMLAIQKLA+VKAIAQGGYPEAERCRISVGHADELT+DPD++SALSITGNF+FH C+HGDFLG+ILGTGIAREKLGDIILQE+KGAQVV
Subjt:  TNFLTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVV

Query:  IAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKG
        I PELVDFL SSLRKVGNVTVSCTRIPL+ LDYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWTTITKNGTILKTGDIVSVSGKG
Subjt:  IAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKG

Query:  RLKIGEINSTKKGKFGVELIRYV
        RLKIGEIN TKKGKF +ELI+YV
Subjt:  RLKIGEINSTKKGKFGVELIRYV

XP_004146247.1 uncharacterized protein LOC101221944 [Cucumis sativus]

6.5e-152

90.31

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Query:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNF
        MAAT TSI ALWSLRRAA   SSFR  L +NLN L F+ ARFPSSPL +SGICQL QAVKGDIDVLLNGV DKGVIVDVK ILVM KRSLSRREVLHTNF
Subjt:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNF

Query:  LTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAP
        LTPPVVKESMLAIQKLA+VKAIAQGGYPEAERCRISVGHADELT+DPDIISALSITGNF FHPCSHGDFLGSILGTGIAREKLGDI+LQE+ GAQVVI P
Subjt:  LTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAP

Query:  ELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK
        ELVDFL SSLRKVGNVTVSCTRIPL+AL+YEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT+ITKNGTILKTGDIVSVSGKGRLK
Subjt:  ELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFGVELIRYV
        IGEINSTKKGKF VELIRYV
Subjt:  IGEINSTKKGKFGVELIRYV

XP_008456024.1 PREDICTED: putative RNA-binding protein YlmH isoform X2 [Cucumis melo]

1.7e-152

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Query:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNF
        MAATTT+IGALWSL R A+  SSFR  LPVNLN L FH  RFPSSPL +SGICQL QAVKGDIDVLLNGV DKGVIVDVK ILVM KRSLSRREVLHTNF
Subjt:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNF

Query:  LTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAP
        LTPPVVKESMLAIQKLA+VKAIAQGGYPEAERCRISVGH+DELT+DPDIISALSITGNF FHPCSHGDFLGSILGTGIAREKLGDII+QE+ GAQVVI P
Subjt:  LTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAP

Query:  ELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK
        ELVDFL SSLRKVGNVTVSCTRIPL+AL+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLK
Subjt:  ELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFGVELIRYV
        IGEINSTKKGKF VELIRYV
Subjt:  IGEINSTKKGKFGVELIRYV

XP_022981895.1 uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima]

4.6e-150

88.24

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Query:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLH
        MAA T SIGALWSLRRAA  SSS R  L VNL+ +SFH ARF   PSSPL SSG+CQL QAVKGDIDVLLNGV DKGVIVDVKHILVM KRSLSRREVLH
Subjt:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLH

Query:  TNFLTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVV
        TNFLTPPVVKESMLAI+KLA+VKAIAQGGYPEAERCRISVGHADELT+DPD++SALSITGNFMFH C+HGDFLG+ILGTGIAREKLGDIILQE+KGAQVV
Subjt:  TNFLTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVV

Query:  IAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKG
        I PELVDFL SSL KVGNVTVSCTRIPL+ LDYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWTTITKNGTILKTGDIVSVSGKG
Subjt:  IAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKG

Query:  RLKIGEINSTKKGKFGVELIRYV
        RLKIGEIN TKKGKF VELIRYV
Subjt:  RLKIGEINSTKKGKFGVELIRYV

XP_038899605.1 putative RNA-binding protein YlmH [Benincasa hispida]

6.5e-152

90.57

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Query:  TSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLT
        TSIGA WSLRRAA  SSSFR+ L VNLN LSFH ARF   PSSPL SSGICQL QAVKGDIDVLLNGV DKGVIVDVKHILVM KRSLSRR VLHTNFLT
Subjt:  TSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAPEL
        PPVVKES+LA+QKLA+VKAIAQGGYPEAERCRISVGHADEL +DPDI+SALSITGNFMFHPCSHGDFLG+ILGTGIAREKLGDIILQE+KGAQVV+ PEL
Subjt:  PPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAPEL

Query:  VDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIG
        VDFLASSLRKVGNVTVSCTRIPL+ALDYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKIG
Subjt:  VDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFGVELIRYV
        EINSTKKGKF VELIRYV
Subjt:  EINSTKKGKFGVELIRYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC56 S4 RNA-binding domain-containing protein

3.1e-152

90.31

Show/hide

Query:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNF
        MAAT TSI ALWSLRRAA   SSFR  L +NLN L F+ ARFPSSPL +SGICQL QAVKGDIDVLLNGV DKGVIVDVK ILVM KRSLSRREVLHTNF
Subjt:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNF

Query:  LTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAP
        LTPPVVKESMLAIQKLA+VKAIAQGGYPEAERCRISVGHADELT+DPDIISALSITGNF FHPCSHGDFLGSILGTGIAREKLGDI+LQE+ GAQVVI P
Subjt:  LTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAP

Query:  ELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK
        ELVDFL SSLRKVGNVTVSCTRIPL+AL+YEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT+ITKNGTILKTGDIVSVSGKGRLK
Subjt:  ELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFGVELIRYV
        IGEINSTKKGKF VELIRYV
Subjt:  IGEINSTKKGKFGVELIRYV

A0A1S3C3I2 putative RNA-binding protein YlmH isoform X2

8.2e-153

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Query:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNF
        MAATTT+IGALWSL R A+  SSFR  LPVNLN L FH  RFPSSPL +SGICQL QAVKGDIDVLLNGV DKGVIVDVK ILVM KRSLSRREVLHTNF
Subjt:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNF

Query:  LTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAP
        LTPPVVKESMLAIQKLA+VKAIAQGGYPEAERCRISVGH+DELT+DPDIISALSITGNF FHPCSHGDFLGSILGTGIAREKLGDII+QE+ GAQVVI P
Subjt:  LTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAP

Query:  ELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK
        ELVDFL SSLRKVGNVTVSCTRIPL+AL+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLK
Subjt:  ELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFGVELIRYV
        IGEINSTKKGKF VELIRYV
Subjt:  IGEINSTKKGKFGVELIRYV

A0A6J1FSF6 uncharacterized protein LOC111446880 isoform X1

2.1e-148

87.35

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Query:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLH
        MAA T SIGALWSLRRAA  SSSFR  L VNL  +SFH ARF   PSSPL +SG+CQL QAVKGDIDVLLNGV DKGVIVDVKHILVM KRSLSRREVLH
Subjt:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLH

Query:  TNFLTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVV
        TNFLTPPVVKESMLAIQKLA+VKAIAQGGYPEAERCRISVGHADELT+DPD++SALSITGNF+F  C+HGDFLG+ILGTGIAREKLGDIILQE+KGAQVV
Subjt:  TNFLTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVV

Query:  IAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISS-GDVRVNWTTITKNGTILKTGDIVSVSGK
        I PELVDFL SSLRKVGNVTVSCTRIPL+ LDYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD ISS GDVRVNWTTITKNGTILKTGDIVSVSGK
Subjt:  IAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISS-GDVRVNWTTITKNGTILKTGDIVSVSGK

Query:  GRLKIGEINSTKKGKFGVELIRYV
        GRLKIGEIN TKKGKF +ELI+YV
Subjt:  GRLKIGEINSTKKGKFGVELIRYV

A0A6J1FU11 uncharacterized protein LOC111446880 isoform X2

2.5e-149

87.31

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Query:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLH
        MAA T SIGALWSLRRAA  SSSFR  L VNL  +SFH ARF   PSSPL +SG+CQL QAVKGDIDVLLNGV DKGVIVDVKHILVM KRSLSRREVLH
Subjt:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLH

Query:  TNFLTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVV
        TNFLTPPVVKESMLAIQKLA+VKAIAQGGYPEAERCRISVGHADELT+DPD++SALSITGNF+F  C+HGDFLG+ILGTGIAREKLGDIILQE+KGAQVV
Subjt:  TNFLTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVV

Query:  IAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKG
        I PELVDFL SSLRKVGNVTVSCTRIPL+ LDYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWTTITKNGTILKTGDIVSVSGKG
Subjt:  IAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKG

Query:  RLKIGEINSTKKGKFGVELIRYV
        RLKIGEIN TKKGKF +ELI+YV
Subjt:  RLKIGEINSTKKGKFGVELIRYV

A0A6J1J103 uncharacterized protein LOC111480897 isoform X1

2.2e-150

88.24

Show/hide

Query:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLH
        MAA T SIGALWSLRRAA  SSS R  L VNL+ +SFH ARF   PSSPL SSG+CQL QAVKGDIDVLLNGV DKGVIVDVKHILVM KRSLSRREVLH
Subjt:  MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARF---PSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLH

Query:  TNFLTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVV
        TNFLTPPVVKESMLAI+KLA+VKAIAQGGYPEAERCRISVGHADELT+DPD++SALSITGNFMFH C+HGDFLG+ILGTGIAREKLGDIILQE+KGAQVV
Subjt:  TNFLTPPVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVV

Query:  IAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKG
        I PELVDFL SSL KVGNVTVSCTRIPL+ LDYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWTTITKNGTILKTGDIVSVSGKG
Subjt:  IAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKG

Query:  RLKIGEINSTKKGKFGVELIRYV
        RLKIGEIN TKKGKF VELIRYV
Subjt:  RLKIGEINSTKKGKFGVELIRYV

SwissProt top hits

e value

%identity

Alignment

P71020 Putative RNA-binding protein YlmH

1.8e-19

30.67

Show/hide

Query:  TNFLTPPVVKESML--AIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDI-ISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGA
        T+FL P   +E ++  A+   A+V     GGY  AER R  +        + D  + A ++     F    H   LG+++G G+ R+K GDI+  E    
Subjt:  TNFLTPPVVKESML--AIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDI-ISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGA

Query:  QVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVS
        Q++++ +  DF+A+ L + G   VS  +I LS L+      +      +SLR+DA+ ++  + SR K   L+ +G V+VNW  +     I+  GD++S+ 
Subjt:  QVVIAPELVDFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVS

Query:  GKGRLKIGEI-NSTKKGKFGVELIR
        G GR  + +I   TKK K+ V   R
Subjt:  GKGRLKIGEI-NSTKKGKFGVELIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G53120.1 RNA-binding S4 domain-containing protein

2.7e-116

66.25

Show/hide

Query:  TSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGI--CQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTP
        TS+   W + R A  S +  + L  N   L  + +   S PLR S +  C  A+A+KGD+D LL GV D+ V  +VK IL M +R+ S+REVLHT+FLTP
Subjt:  TSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGI--CQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTP

Query:  PVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAPELV
        P+VKES+  ++K A+VK +AQGGYPEAERCRIS+GH D LT+DPDI++ALSITGNF F PCSHGDFLG+ILGTGI+REKLGDI++QE+KGAQV+I PELV
Subjt:  PVVKESMLAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAPELV

Query:  DFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIGE
        DF+ ++L KVGNV V+C++IPL AL+YEPP+T +FKT+EASLR+DA+ASAGFKISRSKLVDLISS DVRVNW T+TKNGTI+KTGD+VSVSGKGRLKIGE
Subjt:  DFLASSLRKVGNVTVSCTRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIGE

Query:  INSTKKGKFGVELIRYV
        IN TKKGKF VE+IRY+
Subjt:  INSTKKGKFGVELIRYV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGCAACGACGACAAGCATTGGGGCTCTGTGGAGTCTAAGAAGAGCAGCAACTCATTCTTCCAGTTTCCGAAATCATCTTCCCGTTAACCTCAACAACCTCTCCTT
CCACGGCGCTCGCTTTCCATCTTCTCCTCTGCGCTCCTCAGGAATATGCCAATTAGCACAAGCTGTAAAGGGAGACATTGATGTTTTACTCAATGGAGTTGCAGATAAAG
GTGTTATTGTAGACGTGAAACATATTCTTGTGATGGTCAAACGTTCATTATCAAGACGGGAAGTTCTTCATACGAACTTTCTCACCCCACCTGTGGTTAAAGAGTCAATG
CTAGCTATTCAAAAACTAGCTGAAGTGAAGGCAATAGCTCAGGGAGGTTACCCAGAGGCAGAGCGCTGCCGGATTTCAGTTGGACATGCAGATGAACTTACAACTGATCC
AGACATCATTTCAGCATTGAGTATTACAGGAAATTTTATGTTTCACCCTTGCTCACATGGAGACTTCCTTGGATCAATTCTTGGTACAGGCATTGCTAGGGAAAAGCTTG
GTGATATCATACTCCAGGAAGACAAGGGAGCTCAAGTAGTTATTGCTCCAGAACTTGTCGACTTCCTTGCATCATCTCTGCGCAAGGTTGGCAATGTCACAGTTTCTTGT
ACAAGGATTCCATTGTCAGCTCTTGATTACGAACCACCAAAGACTAAGACATTTAAAACGATTGAGGCATCTCTTAGGGTGGATGCCATTGCAAGTGCTGGCTTCAAGAT
TTCACGGTCTAAACTAGTGGACTTGATCAGTAGCGGCGATGTTCGTGTCAATTGGACGACAATTACAAAAAACGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTA
GCGGGAAAGGGAGACTAAAGATTGGAGAAATAAATTCTACAAAAAAGGGGAAATTTGGTGTTGAGCTTATCAGGTATGTATAA

mRNA sequence

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AAATAAGCAGATAATAAAATGTGAGAAAACCTGGCGCACATAAGAAGTTGAGAGCTCAAAGCCCTAACCATGGCGGCAACGACGACAAGCATTGGGGCTCTGTGGAGTCT
AAGAAGAGCAGCAACTCATTCTTCCAGTTTCCGAAATCATCTTCCCGTTAACCTCAACAACCTCTCCTTCCACGGCGCTCGCTTTCCATCTTCTCCTCTGCGCTCCTCAG
GAATATGCCAATTAGCACAAGCTGTAAAGGGAGACATTGATGTTTTACTCAATGGAGTTGCAGATAAAGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGTCAAA
CGTTCATTATCAAGACGGGAAGTTCTTCATACGAACTTTCTCACCCCACCTGTGGTTAAAGAGTCAATGCTAGCTATTCAAAAACTAGCTGAAGTGAAGGCAATAGCTCA
GGGAGGTTACCCAGAGGCAGAGCGCTGCCGGATTTCAGTTGGACATGCAGATGAACTTACAACTGATCCAGACATCATTTCAGCATTGAGTATTACAGGAAATTTTATGT
TTCACCCTTGCTCACATGGAGACTTCCTTGGATCAATTCTTGGTACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGACAAGGGAGCTCAAGTAGTT
ATTGCTCCAGAACTTGTCGACTTCCTTGCATCATCTCTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACAAGGATTCCATTGTCAGCTCTTGATTACGAACCACCAAA
GACTAAGACATTTAAAACGATTGAGGCATCTCTTAGGGTGGATGCCATTGCAAGTGCTGGCTTCAAGATTTCACGGTCTAAACTAGTGGACTTGATCAGTAGCGGCGATG
TTCGTGTCAATTGGACGACAATTACAAAAAACGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGCGGGAAAGGGAGACTAAAGATTGGAGAAATAAATTCTACA
AAAAAGGGGAAATTTGGTGTTGAGCTTATCAGGTATGTATAAGCTGTGAGGATATTGGAGATTATTATCATGGAATCTCCCATTGGGATTAACATCAGGATTGCTTCCTC
ATGAGTAATAAAAGTAAGTCATTAACCTGATTGTACATGTTAAAATCAGAACATCCATTCTTCAAAAATTTTCATTTGGAAACTCTCTGCCAGTGATTATGATGTTCTTT
ACTGGAATGAATTATCCTTCAAACTAATGTTGTCATGCAGAGTTATAGCTTCACATTAACCATTTGTATATTCAATGATCAGTTTATTTCCATCCCATTTCTAGATGTGT
ATTTGTCTGTTGTTTCTTTTGAATTCCTCAATGTTTGAAGCAGAG

Protein sequence

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MAATTTSIGALWSLRRAATHSSSFRNHLPVNLNNLSFHGARFPSSPLRSSGICQLAQAVKGDIDVLLNGVADKGVIVDVKHILVMVKRSLSRREVLHTNFLTPPVVKESM
LAIQKLAEVKAIAQGGYPEAERCRISVGHADELTTDPDIISALSITGNFMFHPCSHGDFLGSILGTGIAREKLGDIILQEDKGAQVVIAPELVDFLASSLRKVGNVTVSC
TRIPLSALDYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFGVELIRYV

Sed0026190 (gene) of Chayote v1 genome