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Sed0026191 (gene) of Chayote v1 genome

Gene IDSed0026191
OrganismSechium edule (Chayote v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationLG13:19328024..19328458
RNA-Seq ExpressionSed0026191
SyntenySed0026191
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607243.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. sororia]1.6e-2549.65Show/hide
Query:  SSPPSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFE
        +SPP  +   +TY G+  T   LAL AICF+  LY I+  ++K    SE  + +    A    R E EIV+IEAS FSY E D G D  DECAICL+EFE
Subjt:  SSPPSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFE

Query:  EGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP
        + Q C+ M +CGH+FH  CI RWL  +R CPLCR+ VC+VV P
Subjt:  EGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP

KAG7036928.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma]9.4e-2650.35Show/hide
Query:  SSPPSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFE
        +SPP  +   +TY G+  T   LAL AICF+  LY I+  ++K    SE  + +    A    R E EIV+IEAS FSY E D G D  DECAICL+EFE
Subjt:  SSPPSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFE

Query:  EGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVV
        + Q C+ M +CGH+FHR CI RWL  +RHCPLCR+ VC+V+
Subjt:  EGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVV

XP_022155478.1 RING-H2 finger protein ATL1-like [Momordica charantia]6.1e-2548.2Show/hide
Query:  PSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKD-ISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFEEG
        PS  G    + G++L ++Y A+TAIC VF LY I F+ YK  ++ SE +  A   A       E E+V+IEAS F+ G    G D+ +EC ICL EF++G
Subjt:  PSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKD-ISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFEEG

Query:  QNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVV
        + C +M  C HVFHR+CI RWL AERHCPLCR+ VC+ V
Subjt:  QNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVV

XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]1.3e-2752.45Show/hide
Query:  SSPPSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFE
        +SPP  S    TY G+  T   LAL AICF+  LY I+  ++K    SE  + +    A    R E EIV+IEAS FSY E D G D  DECAICL+EFE
Subjt:  SSPPSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFE

Query:  EGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP
        +GQ C+ M  CGH+FHR CI RWL  +RHCPLCR+ VC+VV P
Subjt:  EGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP

XP_023524567.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]3.8e-2750.35Show/hide
Query:  SSPPSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFE
        +SPP  S   +TY G+  T   LA+ AICF+  LY I+  ++K         + +D A A     E EIV+IEAS FSY E D G D  DECAICL+EFE
Subjt:  SSPPSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFE

Query:  EGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP
        + Q C+ M  CGH+FHR CI RWL  +RHCPLCR+ VC+VV P
Subjt:  EGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP

TrEMBL top hitse value%identityAlignment
A0A1S3C6H7 RING-H2 finger protein ATL66-like2.6e-2141.77Show/hide
Query:  MSSPPSTSGADDTYFGMN-LTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGE--------SRAEKEIVKIEASDFSY-----GETDNG
        MSSP   + +     G+  L + Y  + AICF   +Y I F  Y     ++  +  +D     E         R ++EIV+IEA  FSY      E D+ 
Subjt:  MSSPPSTSGADDTYFGMN-LTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGE--------SRAEKEIVKIEASDFSY-----GETDNG

Query:  SDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP
         D+  EC ICLN+FE+ Q C+ MK CGH+FHRSCI RWL  ER CPLCR  VC+VV+P
Subjt:  SDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP

A0A5D3BGV5 RING-H2 finger protein ATL66-like2.6e-2141.77Show/hide
Query:  MSSPPSTSGADDTYFGMN-LTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGE--------SRAEKEIVKIEASDFSY-----GETDNG
        MSSP   + +     G+  L + Y  + AICF   +Y I F  Y     ++  +  +D     E         R ++EIV+IEA  FSY      E D+ 
Subjt:  MSSPPSTSGADDTYFGMN-LTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGE--------SRAEKEIVKIEASDFSY-----GETDNG

Query:  SDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP
         D+  EC ICLN+FE+ Q C+ MK CGH+FHRSCI RWL  ER CPLCR  VC+VV+P
Subjt:  SDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP

A0A6J1DN25 RING-H2 finger protein ATL1-like2.9e-2548.2Show/hide
Query:  PSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKD-ISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFEEG
        PS  G    + G++L ++Y A+TAIC VF LY I F+ YK  ++ SE +  A   A       E E+V+IEAS F+ G    G D+ +EC ICL EF++G
Subjt:  PSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKD-ISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFEEG

Query:  QNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVV
        + C +M  C HVFHR+CI RWL AERHCPLCR+ VC+ V
Subjt:  QNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVV

A0A6J1DVB5 RING-type E3 ubiquitin transferase8.0e-2344.44Show/hide
Query:  SSPPSTS---GADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLN
        +S PSTS   G   T FG+    +YL + ++  VF +      +    S    A      A   + R ++ +V+++ASDFS+G    G D+ DECAICL 
Subjt:  SSPPSTS---GADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLN

Query:  EFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVV
        EFEEG+ C+ M  CGH+FHR+CI RWL  ERHCPLCR  VCIVV
Subjt:  EFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVV

A0A6J1KAT3 RING-type E3 ubiquitin transferase6.3e-2852.45Show/hide
Query:  SSPPSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFE
        +SPP  S    TY G+  T   LAL AICF+  LY I+  ++K    SE  + +    A    R E EIV+IEAS FSY E D G D  DECAICL+EFE
Subjt:  SSPPSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFE

Query:  EGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP
        +GQ C+ M  CGH+FHR CI RWL  +RHCPLCR+ VC+VV P
Subjt:  EGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP

SwissProt top hitse value%identityAlignment
P93823 RING-H2 finger protein ATL15.7e-1042.03Show/hide
Query:  IVKIEASDFSYGETDNGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTV
        + K +  D   GE D  S    EC++CLNEF+E +  +++ +C HVFH  CI  WL    +CPLCR +V
Subjt:  IVKIEASDFSYGETDNGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTV

Q8LFY8 RING-H2 finger protein ATL545.7e-1042.11Show/hide
Query:  NGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIV
        +G  E+ +C +CLNEFEE ++ +++  C H FH SCI  WL++  +CPLCR  + ++
Subjt:  NGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIV

Q9LRB7 E3 ubiquitin-protein ligase EL52.9e-0941.27Show/hide
Query:  ETDNGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP
        E +   D+  ECA+CL E E+G+  + +  CGH FH  C+  WL +   CPLCR TV +   P
Subjt:  ETDNGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP

Q9LZV8 RING-H2 finger protein ATL741.7e-0935.16Show/hide
Query:  FSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTV
        F  +++AAA T A      ++E+ K   +++  GE    +    ECAICL EF +G+  +++  C H FH SCI  WL +   CP CR+++
Subjt:  FSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTV

Q9M0C3 RING-H2 finger protein ATL142.9e-0945.83Show/hide
Query:  DECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTV
        D+C +C++ F +GQ C+ +  CGHVFHR C+  WL     CP+CR+ V
Subjt:  DECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTV

Arabidopsis top hitse value%identityAlignment
AT1G04360.1 RING/U-box superfamily protein4.1e-1142.03Show/hide
Query:  IVKIEASDFSYGETDNGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTV
        + K +  D   GE D  S    EC++CLNEF+E +  +++ +C HVFH  CI  WL    +CPLCR +V
Subjt:  IVKIEASDFSYGETDNGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTV

AT1G72220.1 RING/U-box superfamily protein4.1e-1142.11Show/hide
Query:  NGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIV
        +G  E+ +C +CLNEFEE ++ +++  C H FH SCI  WL++  +CPLCR  + ++
Subjt:  NGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTVCIV

AT3G61460.1 brassinosteroid-responsive RING-H23.5e-1046.3Show/hide
Query:  TDNGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLT-AERHCPLCR
        T++G D  + CA+CL EFE  Q  + +++C H+FHRSC+ RW+   ++ CPLCR
Subjt:  TDNGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLT-AERHCPLCR

AT4G30370.1 RING/U-box superfamily protein2.0e-1045.83Show/hide
Query:  DECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTV
        D+C +C++ F +GQ C+ +  CGHVFHR C+  WL     CP+CR+ V
Subjt:  DECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTV

AT5G01880.1 RING/U-box superfamily protein1.2e-1035.16Show/hide
Query:  FSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTV
        F  +++AAA T A      ++E+ K   +++  GE    +    ECAICL EF +G+  +++  C H FH SCI  WL +   CP CR+++
Subjt:  FSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFEEGQNCQMMKSCGHVFHRSCIHRWLTAERHCPLCRNTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCGCCGCCGTCAACAAGCGGCGCCGACGACACGTATTTCGGCATGAATTTGACGGAACAGTATTTGGCTCTAACAGCCATCTGTTTCGTGTTCACACTATACGC
CATCGTCTTCGCTTACTACAAAGATATAAGTTTTTCCGAAGCAGCAGCAGCCGCCGCCGACACGGCGGCTGCCGGAGAATCGCGGGCGGAGAAAGAGATCGTGAAGATTG
AGGCTTCGGATTTTAGTTACGGTGAAACTGATAACGGAAGTGACGAAAAAGATGAATGTGCGATTTGTCTTAACGAATTTGAAGAGGGGCAAAATTGTCAAATGATGAAA
AGTTGTGGCCATGTTTTTCACCGGAGCTGCATTCACCGGTGGCTCACGGCGGAGCGCCACTGCCCGCTTTGCCGGAACACCGTTTGCATCGTTGTTCAACCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATCGCCGCCGTCAACAAGCGGCGCCGACGACACGTATTTCGGCATGAATTTGACGGAACAGTATTTGGCTCTAACAGCCATCTGTTTCGTGTTCACACTATACGC
CATCGTCTTCGCTTACTACAAAGATATAAGTTTTTCCGAAGCAGCAGCAGCCGCCGCCGACACGGCGGCTGCCGGAGAATCGCGGGCGGAGAAAGAGATCGTGAAGATTG
AGGCTTCGGATTTTAGTTACGGTGAAACTGATAACGGAAGTGACGAAAAAGATGAATGTGCGATTTGTCTTAACGAATTTGAAGAGGGGCAAAATTGTCAAATGATGAAA
AGTTGTGGCCATGTTTTTCACCGGAGCTGCATTCACCGGTGGCTCACGGCGGAGCGCCACTGCCCGCTTTGCCGGAACACCGTTTGCATCGTTGTTCAACCGTGA
Protein sequenceShow/hide protein sequence
MSSPPSTSGADDTYFGMNLTEQYLALTAICFVFTLYAIVFAYYKDISFSEAAAAAADTAAAGESRAEKEIVKIEASDFSYGETDNGSDEKDECAICLNEFEEGQNCQMMK
SCGHVFHRSCIHRWLTAERHCPLCRNTVCIVVQP