CuGenDBv2

Gene ID	Sed0026203
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Genome location	LG04:8454872..8456249
RNA-Seq Expression	Sed0026203
Synteny	Sed0026203
Gene Ontology terms	NA
InterPro domains	IPR025558 - Domain of unknown function DUF4283 IPR040256 - Uncharacterized protein At4g02000-like

Homology

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GenBank top hits

e value

%identity

Alignment

TXG70631.1 hypothetical protein EZV62_005566 [Acer yangbiense]

2.8e-27

37.5

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Query:  EDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFDR
        E++ +  E+ +L  +E  L+ +        ++ + L LA ++L+SK VN +AF+ VM  +W        + I  NTF   FKN  ++ R++N GPWSFD+
Subjt:  EDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFDR

Query:  ALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRV-LSSDGK
        AL+VL+E K      D+ F    FW+QIH +P+ CMT E+ + +G+ IG + EI+  GS D+    I +RV ID+N PL+  +RV +  DGK
Subjt:  ALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRV-LSSDGK

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]

8.1e-43

43.75

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Query:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD
        M++I + WE F     E + + ++    +L  ++V LC+ A++ TSK+++ EA   VMKSVWRV+  TRF+ +G N ++I FK++ EK RV++ GPW+F+
Subjt:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD

Query:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRVLSSDGK
        ++L+VL     T+Q  D+ F    FWIQIHNIP  C++ E+A ILG+++G + EIE DG++ W  P I +RV+ID++ PL+RGI++ +SDGK
Subjt:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRVLSSDGK

XP_022155933.1 uncharacterized protein LOC111022932 [Momordica charantia]

2.7e-38

42.19

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Query:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD
        M++I E WE+F+L   +E+ I +++   L+  E+V      ++ TSK+++VEAF  VMKS+W+V++ T  +  G N ++I FK++ EK+RV+  GPWSF+
Subjt:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD

Query:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRVLSSDGK
         +L+VL     TDQ  D+ F     WIQIH IP  CM  ++AK LG+ IG + EI+ +GS +WT P I +RV+ID++ P +RG++V + D K
Subjt:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRVLSSDGK

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]

2.1e-38

40.62

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Query:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD
        M+DI + WE+F+LI  EE  I ++N   +L  +++ LC   ++  SK++ VEAF  VMK VW+++  TR +  G N ++I FK + EK RV + GPW+FD
Subjt:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD

Query:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRVLSSDGK
        ++L++L+     ++  DI   L  FW+QIH I   CMT ++AK LG+ +G + E++   S DW  P + +RV+I++  PL+RG++V +SDGK
Subjt:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRVLSSDGK

XP_022158119.1 uncharacterized protein LOC111024676, partial [Momordica charantia]

4.3e-28

38.46

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Query:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD
        M++I E WE+F+L   EE+   V+N   +L  E++ LC   ++ TSK+++ +A   VMK VW++++ TR +  G N ++I FK ++EK RV++ GPW+FD
Subjt:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD

Query:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIE
        ++L VL+     D+  D+ F    FW+QIH IP   +T ++AK+LG  +G + E++
Subjt:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIE

TrEMBL top hits

e value

%identity

Alignment

A0A5C7IMZ7 DUF4283 domain-containing protein

1.4e-27

37.5

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Query:  EDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFDR
        E++ +  E+ +L  +E  L+ +        ++ + L LA ++L+SK VN +AF+ VM  +W        + I  NTF   FKN  ++ R++N GPWSFD+
Subjt:  EDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFDR

Query:  ALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRV-LSSDGK
        AL+VL+E K      D+ F    FW+QIH +P+ CMT E+ + +G+ IG + EI+  GS D+    I +RV ID+N PL+  +RV +  DGK
Subjt:  ALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRV-LSSDGK

A0A6J1D765 uncharacterized protein LOC111017902

3.9e-43

43.75

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Query:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD
        M++I + WE F     E + + ++    +L  ++V LC+ A++ TSK+++ EA   VMKSVWRV+  TRF+ +G N ++I FK++ EK RV++ GPW+F+
Subjt:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD

Query:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRVLSSDGK
        ++L+VL     T+Q  D+ F    FWIQIHNIP  C++ E+A ILG+++G + EIE DG++ W  P I +RV+ID++ PL+RGI++ +SDGK
Subjt:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRVLSSDGK

A0A6J1DP89 uncharacterized protein LOC111022932

1.3e-38

42.19

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Query:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD
        M++I E WE+F+L   +E+ I +++   L+  E+V      ++ TSK+++VEAF  VMKS+W+V++ T  +  G N ++I FK++ EK+RV+  GPWSF+
Subjt:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD

Query:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRVLSSDGK
         +L+VL     TDQ  D+ F     WIQIH IP  CM  ++AK LG+ IG + EI+ +GS +WT P I +RV+ID++ P +RG++V + D K
Subjt:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRVLSSDGK

A0A6J1DVS4 uncharacterized protein LOC111023555

1.0e-38

40.62

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Query:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD
        M+DI + WE+F+LI  EE  I ++N   +L  +++ LC   ++  SK++ VEAF  VMK VW+++  TR +  G N ++I FK + EK RV + GPW+FD
Subjt:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD

Query:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRVLSSDGK
        ++L++L+     ++  DI   L  FW+QIH I   CMT ++AK LG+ +G + E++   S DW  P + +RV+I++  PL+RG++V +SDGK
Subjt:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRVLSSDGK

A0A6J1DYG3 uncharacterized protein LOC111024676

2.1e-28

38.46

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Query:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD
        M++I E WE+F+L   EE+   V+N   +L  E++ LC   ++ TSK+++ +A   VMK VW++++ TR +  G N ++I FK ++EK RV++ GPW+FD
Subjt:  MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFD

Query:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIE
        ++L VL+     D+  D+ F    FW+QIH IP   +T ++AK+LG  +G + E++
Subjt:  RALVVLIELKETDQVADIQF-LAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G42140.1 zinc ion binding;nucleic acid binding

2.7e-04

27.78

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Query:  FKNVMEKHRVINEGPWSFDRALVVLIELKETDQVADIQFLAPFWIQIHNIPINCMTIEVAKILGSEIGSIVE
        F++      ++  GPWSF+  + V+    +    A+ + + PFWIQI  IP+  +T  +   +G  +G  +E
Subjt:  FKNVMEKHRVINEGPWSFDRALVVLIELKETDQVADIQFLAPFWIQIHNIPINCMTIEVAKILGSEIGSIVE

Sequences

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CDS sequence

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ATGGAAGACATTTTGGAGAAATGGGAATCATTCTCTCTAATAGGAAGGGAGGAAAAACTTATACCAGTTAATAATTCTTCAATTTTATTGAAAAAAGAAAGTGTGAATCT
ATGTTTGGCTGCAAGAATTTTAACTAGTAAGCAAGTTAATGTGGAGGCTTTCATTGGAGTGATGAAATCGGTTTGGAGGGTTAATCAGATAACAAGATTTGATCATATTG
GGAACAATACGTTTATAATCAAGTTCAAGAACGTCATGGAGAAGCATCGAGTAATCAACGAAGGGCCATGGTCTTTTGATAGAGCGCTAGTGGTTCTTATTGAACTAAAA
GAAACGGACCAAGTGGCAGATATCCAGTTTTTAGCTCCTTTCTGGATTCAAATTCATAATATTCCCATAAATTGTATGACGATTGAGGTTGCGAAAATTTTAGGCAGTGA
AATTGGATCGATTGTGGAAATTGAATGGGATGGTTCCAATGATTGGACATGGCCAATTATCCTCATAAGAGTGGAGATTGATCTCAATCTGCCGCTTCAAAGAGGTATTC
GTGTCTTATCGAGTGATGGAAAGGGCCAAAAACCGGTTGAGGATGATCATGAGTATTCTAGCCCTAATAATAGAAATTTTGGAAGTCGTGGTAATCGTGCAAGCAAAGGG
GATTCTGATGGATGTAGTGATGGAGATAGATGGAGAAGAGAGGAAAATAAAGAAGACAAAGGTGAAAGGCTAATAGATAATGAGCAAAGCCTTATGCAGAATAGCAGCCT
TGCAGTTTTTCGAGGGAGAGATTTGAGTAGTGAGTTTGAAAAGGAGAAATTTATAGAGGGGGCTGTTGGGAAGGGACTGAGCATTAAAGAAGATATTGAAACAATGAAAT
CTTTAAAAAAGATAGACATTGTTGGGGAAAAGTCTGATTTTAATCACACAACTAGAGAAGTTGGTGAGATTGAACCTCATTGGGCGGAGATACCGGTGAAAGGGGTGGGA
GGTGGGACTAAGGATAATTTGAAGTTAAGGAAGTTTCATAGATTTAAAAGAGTGGAAGAGTCTCTACAACATGTTGACGTTATGGACAGCGAAATGAAAGGAAAAAGGAA
GTTGAACCAGAAGGAGGATGTTAACATAAATGGAAAGAAACAGTGTTTTGAGACAAGGAATAACAATGCTTTGGTGGTGGCTGATGTTCAGCCCCCCCTAGAGCCATGA

mRNA sequence

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Protein sequence

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MEDILEKWESFSLIGREEKLIPVNNSSILLKKESVNLCLAARILTSKQVNVEAFIGVMKSVWRVNQITRFDHIGNNTFIIKFKNVMEKHRVINEGPWSFDRALVVLIELK
ETDQVADIQFLAPFWIQIHNIPINCMTIEVAKILGSEIGSIVEIEWDGSNDWTWPIILIRVEIDLNLPLQRGIRVLSSDGKGQKPVEDDHEYSSPNNRNFGSRGNRASKG
DSDGCSDGDRWRREENKEDKGERLIDNEQSLMQNSSLAVFRGRDLSSEFEKEKFIEGAVGKGLSIKEDIETMKSLKKIDIVGEKSDFNHTTREVGEIEPHWAEIPVKGVG
GGTKDNLKLRKFHRFKRVEESLQHVDVMDSEMKGKRKLNQKEDVNINGKKQCFETRNNNALVVADVQPPLEP

Sed0026203 (gene) of Chayote v1 genome