CuGenDBv2

Gene ID	Sed0026211
Organism	Sechium edule (Chayote v1)
Description	Ribosomal protein
Genome location	LG07:8955758..8957996
RNA-Seq Expression	Sed0026211
Synteny	Sed0026211
Gene Ontology terms	GO:0000028 - ribosomal small subunit assembly (biological process) GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0005763 - mitochondrial small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0048027 - mRNA 5'-UTR binding (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR001971 - Ribosomal protein S11

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8649303.1 hypothetical protein Csa_014520 [Cucumis sativus]

2.4e-20

58.49

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Query:  FSRPPSMEHNADIVHVKLINTK---LKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKRQAIMSWGDGF
        F RP +MEHNADIVH+KL+        T  +G   ++   S G L    KLSR Y+A++IAEYVG ESRKLGLKS VMRVK  T+ KKK+QAI+SW DGF
Subjt:  FSRPPSMEHNADIVHVKLINTK---LKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKRQAIMSWGDGF

Query:  TDSRSD
        TDSR+D
Subjt:  TDSRSD

XP_004137167.1 probable ribosomal protein S11, mitochondrial [Cucumis sativus]

2.4e-20

58.49

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Query:  FSRPPSMEHNADIVHVKLINTK---LKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKRQAIMSWGDGF
        F RP +MEHNADIVH+KL+        T  +G   ++   S G L    KLSR Y+A++IAEYVG ESRKLGLKS VMRVK  T+ KKK+QAI+SW DGF
Subjt:  FSRPPSMEHNADIVHVKLINTK---LKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKRQAIMSWGDGF

Query:  TDSRSD
        TDSR+D
Subjt:  TDSRSD

XP_022141322.1 probable ribosomal protein S11, mitochondrial [Momordica charantia]

1.3e-21

62.93

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Query:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR
        F RPP+ME NADIVHVKL+             NTKLK S   G + E  G         KLSR Y AEAIAEYVG ESRKLGLKS VMRVK  TY KKKR
Subjt:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR

Query:  QAIMSWGDGFTDSRSD
        QAIMSW DGFTDSRSD
Subjt:  QAIMSWGDGFTDSRSD

XP_022942058.1 probable ribosomal protein S11, mitochondrial [Cucurbita moschata]

4.1e-20

58.62

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Query:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR
        F RPP+MEHNADIVHVKL+             NTKLK S   G + E  G         KLSR Y AEA AEYVG ES+KLGLKS VMRVK  TY KKK+
Subjt:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR

Query:  QAIMSWGDGFTDSRSD
        QAI+SW DGFTDS+ D
Subjt:  QAIMSWGDGFTDSRSD

XP_022999735.1 probable ribosomal protein S11, mitochondrial [Cucurbita maxima]

2.2e-21

61.21

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Query:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR
        F RPP+MEHNADIVHVKL+             NTKLK S   G + E  G         KLSR Y AEA AEYVG ESRKLGLKS VMRVK  TY KKK+
Subjt:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR

Query:  QAIMSWGDGFTDSRSD
        QAI+SW DGFTDSRSD
Subjt:  QAIMSWGDGFTDSRSD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KVQ8 Uncharacterized protein

1.2e-20

58.49

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Query:  FSRPPSMEHNADIVHVKLINTK---LKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKRQAIMSWGDGF
        F RP +MEHNADIVH+KL+        T  +G   ++   S G L    KLSR Y+A++IAEYVG ESRKLGLKS VMRVK  T+ KKK+QAI+SW DGF
Subjt:  FSRPPSMEHNADIVHVKLINTK---LKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKRQAIMSWGDGF

Query:  TDSRSD
        TDSR+D
Subjt:  TDSRSD

A0A5D3E7T5 Putative ribosomal protein S11

7.5e-20

56.03

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Query:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR
        + RP +MEHNADIVH+KL+             NTKLK S      +E+L   G      KLSR Y+ ++IAEYVG ESRKLGLKS VMRVK  T+ KKK+
Subjt:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR

Query:  QAIMSWGDGFTDSRSD
        QAI+SW DGFTDSRSD
Subjt:  QAIMSWGDGFTDSRSD

A0A6J1CJJ5 probable ribosomal protein S11, mitochondrial

6.1e-22

62.93

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Query:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR
        F RPP+ME NADIVHVKL+             NTKLK S   G + E  G         KLSR Y AEAIAEYVG ESRKLGLKS VMRVK  TY KKKR
Subjt:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR

Query:  QAIMSWGDGFTDSRSD
        QAIMSW DGFTDSRSD
Subjt:  QAIMSWGDGFTDSRSD

A0A6J1FTT5 probable ribosomal protein S11, mitochondrial

2.0e-20

58.62

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Query:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR
        F RPP+MEHNADIVHVKL+             NTKLK S   G + E  G         KLSR Y AEA AEYVG ES+KLGLKS VMRVK  TY KKK+
Subjt:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR

Query:  QAIMSWGDGFTDSRSD
        QAI+SW DGFTDS+ D
Subjt:  QAIMSWGDGFTDSRSD

A0A6J1KGF8 probable ribosomal protein S11, mitochondrial

1.0e-21

61.21

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Query:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR
        F RPP+MEHNADIVHVKL+             NTKLK S   G + E  G         KLSR Y AEA AEYVG ESRKLGLKS VMRVK  TY KKK+
Subjt:  FSRPPSMEHNADIVHVKLI-------------NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKR

Query:  QAIMSWGDGFTDSRSD
        QAI+SW DGFTDSRSD
Subjt:  QAIMSWGDGFTDSRSD

SwissProt top hits

e value

%identity

Alignment

Q8VZT8 Probable ribosomal protein S11, mitochondrial

1.6e-11

42.31

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Query:  PSMEHNADIVHVKLI--NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSR---YYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKRQAIMSWGDGFTD
        P++E NADI+H+K++  NT +  +   G  V+   + G LP  LK  R    YTA+A AE +G  ++ +GLKS V++V   T+  KK++AI+++ DGFT+
Subjt:  PSMEHNADIVHVKLI--NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSR---YYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKRQAIMSWGDGFTD

Query:  SRSD
        SRSD
Subjt:  SRSD

Arabidopsis top hits

e value

%identity

Alignment

AT1G31817.1 Ribosomal L18p/L5e family protein

1.1e-12

42.31

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Query:  PSMEHNADIVHVKLI--NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSR---YYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKRQAIMSWGDGFTD
        P++E NADI+H+K++  NT +  +   G  V+   + G LP  LK  R    YTA+A AE +G  ++ +GLKS V++V   T+  KK++AI+++ DGFT+
Subjt:  PSMEHNADIVHVKLI--NTKLKTSPRGGIVVEDLGSDGMLPSKLKLSR---YYTAEAIAEYVGFESRKLGLKSDVMRVKACTYSKKKRQAIMSWGDGFTD

Query:  SRSD
        SRSD
Subjt:  SRSD

Sequences

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CDS sequence

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ATGGCTTCAACTAGTACAATAGATAGTATTCAATCAACGTGCATAAAATCCTTAACTAATGTCACAAATTGTCTTCAATTATTTTCTAGACCACCCAGTATGGAGCACAA
TGCTGATATTGTCCATGTAAAACTGATAAATACAAAGCTTAAGACGTCCCCAAGGGGTGGCATAGTGGTTGAAGACTTGGGCTCTGATGGTATGCTCCCCTCAAAGCTTA
AACTGTCCCGTTATTATACTGCTGAAGCAATTGCAGAGTATGTTGGTTTTGAATCTCGAAAATTGGGGTTGAAATCAGATGTGATGAGGGTGAAGGCTTGTACTTATTCT
AAGAAGAAAAGGCAAGCGATCATGAGTTGGGGAGATGGGTTTACAGATTCCAGAAGTGATTAA

mRNA sequence

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Protein sequence

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MASTSTIDSIQSTCIKSLTNVTNCLQLFSRPPSMEHNADIVHVKLINTKLKTSPRGGIVVEDLGSDGMLPSKLKLSRYYTAEAIAEYVGFESRKLGLKSDVMRVKACTYS
KKKRQAIMSWGDGFTDSRSD

Sed0026211 (gene) of Chayote v1 genome