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Sed0026342 (gene) of Chayote v1 genome

Gene IDSed0026342
OrganismSechium edule (Chayote v1)
Descriptionthioredoxin-like protein 4B
Genome locationLG09:3350708..3354796
RNA-Seq ExpressionSed0026342
SyntenySed0026342
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0006413 - translational initiation (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575968.1 Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia]5.1e-7594.7Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MSYLLRTL  KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMD+GTAD
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
        HTKWIGAF++KQDFIDVVEAIFRGAMKGKLIVNCPLPPER+PKYQLLYKD+
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM

XP_004139666.1 thioredoxin-like protein 4B [Cucumis sativus]2.0e-7493.38Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MSYLLRTL KK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMD+GTAD
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
        HTKW+GAF+QKQDFIDVVEAIFRGAMKGKLIVNCPLPPER+PKYQL YKD+
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM

XP_022152114.1 thioredoxin-like protein 4B [Momordica charantia]1.0e-7595.36Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MSYLLRTL KKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMD+GTAD
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
        HTKWIGAF+QKQDFIDVVEAIFRGAMKGKLIVNCPLPPER+PKYQLLYKD+
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM

XP_022953679.1 thioredoxin-like protein 4B [Cucurbita moschata]2.0e-7494.04Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MSYLLRTL  KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMD+GTAD
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
        HTKWIGAF++KQDFIDVVEAIFRGAMKGKLIV+CPLPPER+PKYQLLYKD+
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM

XP_022991475.1 thioredoxin-like protein 4B [Cucurbita maxima]8.8e-7594.04Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MSYLLRTL  KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMD+GTAD
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
        HTKWIGAF++KQDFIDVVEAIFRGAMKGKLIVNCPLPPER+PKYQLLYKD+
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM

TrEMBL top hitse value%identityAlignment
A0A1S3BH38 thioredoxin-like protein 4B1.8e-7392.05Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MSYLLRTL KK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVYVKYFDITLIPSTVFFFNAHHMKMD+GTAD
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
        HTKW+GAF+QKQ+FIDVVEAIFRGAMKGKLIVNCPLPPE++PKYQLL+KD+
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM

A0A6J1DGN8 thioredoxin-like protein 4B5.0e-7695.36Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MSYLLRTL KKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMD+GTAD
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
        HTKWIGAF+QKQDFIDVVEAIFRGAMKGKLIVNCPLPPER+PKYQLLYKD+
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM

A0A6J1GQC5 thioredoxin-like protein 4B9.5e-7594.04Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MSYLLRTL  KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMD+GTAD
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
        HTKWIGAF++KQDFIDVVEAIFRGAMKGKLIV+CPLPPER+PKYQLLYKD+
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM

A0A6J1JT18 thioredoxin-like protein 4B4.3e-7594.04Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MSYLLRTL  KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMD+GTAD
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
        HTKWIGAF++KQDFIDVVEAIFRGAMKGKLIVNCPLPPER+PKYQLLYKD+
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM

A0A6P4ATD0 thioredoxin-like protein 4B3.7e-7188.08Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MSYLL TL KKREVDSII+DTIDKVL+LRFGR SDSVCLLLDD+L+K AREVSKFA+IALVDIDSE++QVYV YFDITLIPST+FFFNAHHMKMD+GTAD
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
        HTKW+GAF+QKQDFIDVVEAIFRGAMKGKLIVNCPLPPER+PKYQLLYKD+
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A6.6e-1735.56Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCP
        + K   A   KQ+ +D++E ++RGA KG+ +V  P
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCP

P83877 Thioredoxin-like protein 4A6.6e-1735.56Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCP
        + K   A   KQ+ +D++E ++RGA KG+ +V  P
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCP

Q8BUH1 Thioredoxin-like protein 4B5.2e-4659.6Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MS+LL  L  K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I LVD+D     VY +YFDI+ IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
        HTK++G+F  KQDFID++E I+RGAM+GKLIV  P+ P+ VPKY LLY+D+
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM

Q9FE62 Thioredoxin-like protein YLS85.1e-1737.96Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDAGT
        MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDAGT

Query:  ADHTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCP
         ++ K   A   KQ+FID++E ++RGA KG+ +V  P
Subjt:  ADHTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCP

Q9NX01 Thioredoxin-like protein 4B4.0e-4658.94Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MS+LL  L  K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I LVD+D  +  VY +YFDI+ IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
        HTK++G+F  KQDFID++E I+RGAM+GKLIV  P+ P+ +PKY LLY+D+
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM

Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP9.4e-6776.16Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD
        MSYLL+TL  K E+D +IRDTID+VL+LRFGR SD+VCL  D+ILAK  R+VSKFA +ALVD+DSE++QVYVKYFDITL PST+FFFNAHHMK+D+GTAD
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTAD

Query:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM
        HTKW+GAF+ KQDFIDVVEAI+RGAMKGK+IV CP+PPER+PKYQL+YKD+
Subjt:  HTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP3.6e-1837.96Show/hide
Query:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDAGT
        MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDAGT

Query:  ADHTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCP
         ++ K   A   KQ+FID++E ++RGA KG+ +V  P
Subjt:  ADHTKWIGAFNQKQDFIDVVEAIFRGAMKGKLIVNCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTACCTTCTAAGGACCTTAAGAAAGAAGAGAGAAGTGGATTCCATCATTAGGGACACCATTGATAAGGTCCTCATTCTTCGATTTGGCCGGTGTTCCGATTCAGT
GTGTCTCCTCCTTGACGATATTCTCGCTAAGTGCGCACGGGAAGTTTCGAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTATGTCAAGT
ACTTTGACATAACTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATGCAGGGACTGCAGATCATACAAAGTGGATTGGTGCTTTTAACCAG
AAACAGGATTTTATTGATGTGGTGGAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTCATTGTGAATTGTCCATTGCCTCCTGAGCGAGTTCCAAAATACCAATTATT
ATACAAGGATATGTAG
mRNA sequenceShow/hide mRNA sequence
ATTTCCTGATAAATTCCTTGTCAAAAAGAAAAATATAATAACTCCGGTTAAACTTTACGCTCCATCGCACCGCCGTTCGCCGTCGGAAAGACTTCTCTCGCAAATCTCAC
CGTCGATCTCTCTCACTCTCACCGGTGGATTGCAGACGGGAAAGAGGATGAGCTACCTTCTAAGGACCTTAAGAAAGAAGAGAGAAGTGGATTCCATCATTAGGGACACC
ATTGATAAGGTCCTCATTCTTCGATTTGGCCGGTGTTCCGATTCAGTGTGTCTCCTCCTTGACGATATTCTCGCTAAGTGCGCACGGGAAGTTTCGAAGTTTGCTTCAAT
AGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTATGTCAAGTACTTTGACATAACTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGG
ATGCAGGGACTGCAGATCATACAAAGTGGATTGGTGCTTTTAACCAGAAACAGGATTTTATTGATGTGGTGGAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTCATT
GTGAATTGTCCATTGCCTCCTGAGCGAGTTCCAAAATACCAATTATTATACAAGGATATGTAGGAGACAAATGGGTATTTAAATGCCTTCCTGTAAGTTTATTTCTAACT
AGTTTTACAATGCTATCAGTTCATCTTGCTCTGTAATTTTAGGTGAATCTCAATCAAGTTGCCATAATAAGAATGGGTTAAACTTAATTGAGATTCAGTGAAAAATGTCA
CAAGATTTCTCTTACTATCTCCATCCTTTGCTGTGAAGTAGTTCAACATTTGTGGTATAAGCTTGAAATTTGGTGAACAGAAGAAAAGTTTATGTGAACTTTTTTCTTGA
GCTATGGATTGAAAATGTAAGAAAATGGGAGAACTTGAGAAAGGTCAAGTTATGTACTTGATCCAAGTGGTGAGGTTATATAGTTCTTCATTACCTCTCCTATTTTGTGT
AACTAATTTCTCTTTTATTAGTTTGTTAGTGAGGGATTACATCATATATGTAAATGCATCTCCTTATATTTTGTACAGAAGATCAATGAAAATAGAGATTTTTTTTTT
Protein sequenceShow/hide protein sequence
MSYLLRTLRKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDAGTADHTKWIGAFNQ
KQDFIDVVEAIFRGAMKGKLIVNCPLPPERVPKYQLLYKDM