CuGenDBv2

Gene ID	Sed0026344
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L20, chloroplastic
Genome location	LG13:18456710..18457376
RNA-Seq Expression	Sed0026344
Synteny	Sed0026344
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

YP_009447473.1 ribosomal protein L20 [Cucurbita maxima]

1.9e-53

99.15

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWI RINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

YP_009560858.1 ribosomal protein L20 [Trichosanthes kirilowii]

5.1e-54

100

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

YP_009751676.1 ribosomal protein L20 [Hodgsonia heteroclita]

2.5e-53

99.15

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKI LFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

YP_009752266.1 ribosomal protein L20 [Trichosanthes baviensis]

6.6e-54

99.15

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNK+DYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

YP_009752604.1 ribosomal protein L20 [Trichosanthes homophylla]

1.9e-53

98.29

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNK+DYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
         ILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

TrEMBL top hits

e value

%identity

Alignment

A0A410HFA7 50S ribosomal protein L20, chloroplastic

2.5e-54

100

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

A0A6H0EQN9 50S ribosomal protein L20, chloroplastic

2.5e-54

100

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

A0A6H0ERB9 50S ribosomal protein L20, chloroplastic

2.5e-54

100

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

A0A6H0ES10 50S ribosomal protein L20, chloroplastic

2.5e-54

100

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

A0A6H0ESL1 50S ribosomal protein L20, chloroplastic

2.5e-54

100

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

SwissProt top hits

e value

%identity

Alignment

B1NWH3 50S ribosomal protein L20, chloroplastic

2.5e-48

87.18

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRI+RGYIARRRRTKIRLFASSFRGAHSRLTRTI QQKIRAL SA+RDR RQKRNFR+LW+TRINAVIR + V YSYSR I+NLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISN+I+K
Subjt:  AILNRNCLYMISNEIIK

Q09G23 50S ribosomal protein L20, chloroplastic

4.6e-50

89.74

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRI+RGYIARRRRTKIRLFAS+FRGAHSRLTRT TQQK+RAL SA+RDRGRQKRNFR+LWITRINAVIR NKV YSYSR IH+LYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AI NRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

Q09WZ4 50S ribosomal protein L20, chloroplastic

1.1e-48

88.89

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSF+GA SRLTRTITQQKIRAL SA++DRGRQKR+FR+LWITRINAVIR NKV YSYS  IH+LYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEI+K
Subjt:  AILNRNCLYMISNEIIK

Q4VZJ4 50S ribosomal protein L20, chloroplastic

1.1e-54

97.44

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWI RINAVIR N VDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

Q7FNS5 50S ribosomal protein L20, chloroplastic

2.5e-48

88.89

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWITRINAVIR   V YSYSR IH+LYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AI NRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

6.9e-09

39.33

Show/hide

Query:  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAI
        + +I   A  FRG      R   ++  +AL  +YRDR  +KR  R LWI RINA  R + V  +Y  FIH L K  + LNRK+L+++++
Subjt:  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAI

ATCG00660.1 ribosomal protein L20

7.1e-46

81.2

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTK+RLFASSFRGAHSRLTRT+TQQ+IRAL SA+RDRG++KR+FR+LWITRINAVI    V YSY+ FIHNLYK+QLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        A+LNR+CLY ISN+I K
Subjt:  AILNRNCLYMISNEIIK

Sequences

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CDS sequence

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ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCACGACTTACTCGAACTATTACTCA
ACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCACTCGAATAAATGCAGTAATTCGATATAATAAGG
TAGACTACAGTTATAGTAGATTCATACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGGAATTGTCTTTATATG
ATTTCCAATGAGATCATAAAATAA

mRNA sequence

Show/hide mRNA sequence

CTCCGGTGTATAGAGAGGACCTCACCGTTTACGAAGTAACCATAGAAACGAAGGAACCCACTATTTCTTTATCCATTTCTATTTTTATTTATTTACTCTATGTTTTTTTT
TCTACCTAGTACCAATACAATTTCGTATTTTCGGGTGACTAGAAGAAAAAACGAAATCGTGGTCGGGAAGGTTATAGTAGCAAAAGCCATTGGAATTTTTATTTTATACA
TTGGAAAAATACGTTTTGTTATTAATAGACTAGGAAAGGAATAACTAAAAGAAAGGAAATCAATTAGTTATTCATCAAAGTTTCATTTATTCAATGACTAGAATTAAACG
AGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCACGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTT
TGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCACTCGAATAAATGCAGTAATTCGATATAATAAGGTAGACTACAGTTATAGT
AGATTCATACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGGAATTGTCTTTATATGATTTCCAATGAGATCAT
AAAATAA

Protein sequence

Show/hide protein sequence

MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYM
ISNEIIK

Sed0026344 (gene) of Chayote v1 genome