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Sed0026348 (gene) of Chayote v1 genome

Gene IDSed0026348
OrganismSechium edule (Chayote v1)
Descriptionclassical arabinogalactan protein 1-like
Genome locationLG10:35584726..35585396
RNA-Seq ExpressionSed0026348
SyntenySed0026348
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011659718.1 classical arabinogalactan protein 10 [Cucumis sativus]3.5e-0755.83Show/hide
Query:  MASLHITLLALTALSLISSAVAQSPSLSPSPSPKKSHSPTPHSHSPN----LSHKSAPLPATANPPIDASSSQAASPSSISSPPAAAAAAPAP--NSAIS
        MASL ITL+ALTAL LI+S  AQ    SP+PSPKKSH P  HS SP+    LSHKS   P         S S + SP + SS P A A APA   N AI+
Subjt:  MASLHITLLALTALSLISSAVAQSPSLSPSPSPKKSHSPTPHSHSPN----LSHKSAPLPATANPPIDASSSQAASPSSISSPPAAAAAAPAP--NSAIS

Query:  TPFAVGGSLFAAVSAAAFLF
          FAV  SLF AVSAAAFLF
Subjt:  TPFAVGGSLFAAVSAAAFLF
XP_022141985.1 classical arabinogalactan protein 1-like [Momordica charantia]5.0e-0656.64Show/hide
Query:  MASLHITLLALTALSLISSAVAQSPSLSPSPSPKKSH--SPTPHSHSPNLSHKSAPLPAT-----ANPPIDASSSQAASPSSISSPPAAAAAAPAPNSAI
        MAS+  T+LAL AL LI+SA AQSP        K SH  SP+P + SP +S KSAP PAT     A PP  +S S A  PSSISSPPA A AA A N+A 
Subjt:  MASLHITLLALTALSLISSAVAQSPSLSPSPSPKKSH--SPTPHSHSPNLSHKSAPLPAT-----ANPPIDASSSQAASPSSISSPPAAAAAAPAPNSAI

Query:  STPFAVGGSLFAA
        S  FAV GSLFAA
Subjt:  STPFAVGGSLFAA
TrEMBL top hitse value%identityAlignment
A0A0A0K7F2 Uncharacterized protein1.7e-0755.83Show/hide
Query:  MASLHITLLALTALSLISSAVAQSPSLSPSPSPKKSHSPTPHSHSPN----LSHKSAPLPATANPPIDASSSQAASPSSISSPPAAAAAAPAP--NSAIS
        MASL ITL+ALTAL LI+S  AQ    SP+PSPKKSH P  HS SP+    LSHKS   P         S S + SP + SS P A A APA   N AI+
Subjt:  MASLHITLLALTALSLISSAVAQSPSLSPSPSPKKSHSPTPHSHSPN----LSHKSAPLPATANPPIDASSSQAASPSSISSPPAAAAAAPAP--NSAIS

Query:  TPFAVGGSLFAAVSAAAFLF
          FAV  SLF AVSAAAFLF
Subjt:  TPFAVGGSLFAAVSAAAFLF
A0A6J1CJM5 classical arabinogalactan protein 1-like2.4e-0656.64Show/hide
Query:  MASLHITLLALTALSLISSAVAQSPSLSPSPSPKKSH--SPTPHSHSPNLSHKSAPLPAT-----ANPPIDASSSQAASPSSISSPPAAAAAAPAPNSAI
        MAS+  T+LAL AL LI+SA AQSP        K SH  SP+P + SP +S KSAP PAT     A PP  +S S A  PSSISSPPA A AA A N+A 
Subjt:  MASLHITLLALTALSLISSAVAQSPSLSPSPSPKKSH--SPTPHSHSPNLSHKSAPLPAT-----ANPPIDASSSQAASPSSISSPPAAAAAAPAPNSAI

Query:  STPFAVGGSLFAA
        S  FAV GSLFAA
Subjt:  STPFAVGGSLFAA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCCTACACATTACACTCCTAGCCCTAACCGCGCTGTCTTTGATCTCCTCCGCCGTCGCCCAATCTCCGTCGCTGTCGCCATCTCCGTCGCCGAAGAAATCTCA
CTCTCCCACTCCCCATTCTCATTCCCCTAACCTTTCTCACAAATCTGCGCCGTTGCCGGCCACCGCTAACCCTCCCATCGACGCTTCGTCGTCACAGGCCGCTTCTCCCT
CCTCCATCTCCTCTCCTCCCGCAGCTGCTGCCGCCGCTCCTGCTCCTAACAGTGCTATTTCCACTCCTTTCGCCGTCGGCGGCTCTCTCTTCGCCGCCGTCTCCGCCGCT
GCTTTCCTCTTCTAG
mRNA sequenceShow/hide mRNA sequence
CTCAAACTCACATCTCATACAAATCACTCTTTCAAATTCCTACTCCATAATTTTTCTCCCACTATCATCAATGGCTTCCCTACACATTACACTCCTAGCCCTAACCGCGC
TGTCTTTGATCTCCTCCGCCGTCGCCCAATCTCCGTCGCTGTCGCCATCTCCGTCGCCGAAGAAATCTCACTCTCCCACTCCCCATTCTCATTCCCCTAACCTTTCTCAC
AAATCTGCGCCGTTGCCGGCCACCGCTAACCCTCCCATCGACGCTTCGTCGTCACAGGCCGCTTCTCCCTCCTCCATCTCCTCTCCTCCCGCAGCTGCTGCCGCCGCTCC
TGCTCCTAACAGTGCTATTTCCACTCCTTTCGCCGTCGGCGGCTCTCTCTTCGCCGCCGTCTCCGCCGCTGCTTTCCTCTTCTAGATGATCACTCTGTCTCTACTCCGAC
CAAGTGCTATTTTTTTTCTTTCTTATCGTTATTATTATTATTTGTTTTTTATGTTTTAATTTCAATTCTGTTACTTTTTATTGTTTTATTGCTGCGGATAGTTTATAATC
TATGGTGGAGTTCGGTGTTTGTAAAAGCATATATTCACTTGAATTTTGAATGCTATTATTATACTAAATTGCTTCTTTTTTTTGTTCATTCATTCGATCAATAATATTGG
TGGGTAATGAA
Protein sequenceShow/hide protein sequence
MASLHITLLALTALSLISSAVAQSPSLSPSPSPKKSHSPTPHSHSPNLSHKSAPLPATANPPIDASSSQAASPSSISSPPAAAAAAPAPNSAISTPFAVGGSLFAAVSAA
AFLF