CuGenDBv2

Gene ID	Sed0026401
Organism	Sechium edule (Chayote v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic
Genome location	LG07:2322987..2325565
RNA-Seq Expression	Sed0026401
Synteny	Sed0026401
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR003425 - CCB3/YggT

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136017.2 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X3 [Cucumis sativus]

2.2e-83

87.43

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Query:  AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLA
        A ACSSLSSIRRGFKYHPQRNPNC+FQAI+CSSSLLGSFTSSK  LSLAY  PPLKP  AAAYE ARTIP  LQDASMAASDF+NSMTLADLDP TAKLA
Subjt:  AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLA

Query:  IGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        I FLGP  S+FSFLFIARIVMSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Subjt:  IGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

XP_008451549.1 PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Cucumis melo]

1.9e-82

88.42

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Query:  AACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAI
        AACSSLSSIRRGFKYHPQRNPN +FQAI+CSSSLLGSFTSSKI  SLAY  PPLKP  AAAYE ARTIP ALQDASMAASDF+NSMTLADLDP TAKLAI
Subjt:  AACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAI

Query:  GFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
         FLGP  S+FSFLFIARIVMSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  GFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

XP_022953720.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Cucurbita moschata]

1.6e-81

85.34

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Query:  AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLA
        A ACSSLS+IRRGF YHPQ NPNCRFQA +CSSSLLGSFTSSKIHL L YATPPLKPA       ARTIP ALQDAS+AASDFMN+++LADLDP TAKLA
Subjt:  AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLA

Query:  IGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        IGFLGPF S FSFLFIARIVMSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  IGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

XP_023548988.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]

3.6e-81

85.34

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Query:  AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLA
        A ACSSLS+IRRGF YHPQ NPNCRFQA +CSSSLLGSFTSSKIHL L YATPPLKPA       ARTIP ALQDASMAASDFMN++ LADLDP TAKLA
Subjt:  AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLA

Query:  IGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        IG LGPF S FSFLFIARIVMSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  IGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

XP_038896183.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 [Benincasa hispida]

1.7e-83

86.91

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Query:  AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLA
        AAACSSLS IRRGFKYHPQRNPNCRFQA +CSSS+L SFT+SK+HLSLAYAT PLKP  AAAYE ARTIP ALQDASM+ASDFMN++ LADLDP  AKLA
Subjt:  AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLA

Query:  IGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        IGFLGPF S FSFLFIARIVMSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  IGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9A7 Uncharacterized protein

3.3e-80

79.52

Show/hide

Query:  AAACSSLSSIR-------------------RGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAAS
        A ACSSLSSIR                   RGFKYHPQRNPNC+FQAI+CSSSLLGSFTSSK  LSLAY  PPLKP  AAAYE ARTIP  LQDASMAAS
Subjt:  AAACSSLSSIR-------------------RGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAAS

Query:  DFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQG
        DF+NSMTLADLDP TAKLAI FLGP  S+FSFLFIARIVMSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGL+SFLNEILLGPQG
Subjt:  DFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQG

Query:  LLVLLSQQVS
        LLVLLSQQVS
Subjt:  LLVLLSQQVS

A0A1S3BSI7 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic

9.2e-83

88.42

Show/hide

Query:  AACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAI
        AACSSLSSIRRGFKYHPQRNPN +FQAI+CSSSLLGSFTSSKI  SLAY  PPLKP  AAAYE ARTIP ALQDASMAASDF+NSMTLADLDP TAKLAI
Subjt:  AACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAI

Query:  GFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
         FLGP  S+FSFLFIARIVMSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  GFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

A0A5A7VQJ0 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3

1.5e-77

87.29

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Query:  RRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSL
        +RGFKYHPQRNPN +FQAI+CSSSLLGSFTSSKI  SLAY  PPLKP  AAAYE ARTIP ALQDASMAASDF+NSMTLADLDP TAKLAI FLGP  S+
Subjt:  RRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSL

Query:  FSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        FSFLFIARIVMSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  FSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

A0A6J1GQG0 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic

7.8e-82

85.34

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Query:  AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLA
        A ACSSLS+IRRGF YHPQ NPNCRFQA +CSSSLLGSFTSSKIHL L YATPPLKPA       ARTIP ALQDAS+AASDFMN+++LADLDP TAKLA
Subjt:  AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLA

Query:  IGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        IGFLGPF S FSFLFIARIVMSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  IGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

A0A6J1JVN7 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2

4.0e-78

83.77

Show/hide

Query:  AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLA
        A ACSSLS+IRRGF YHPQ NPNCRFQA +CSSSLLGSFTSSKI L L  ATP LKPA       ARTIP ALQDASMAASDF N++ LADLDP TAKLA
Subjt:  AAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLA

Query:  IGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        IGFLGPF S FSFLFIARIVMSWYP +PVGKFPYVIAY PTEPLL ATRKVIPPL GVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  IGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

SwissProt top hits

e value

%identity

Alignment

O78424 Uncharacterized protein ycf19

8.2e-04

31.08

Show/hide

Query:  FLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEIL
        F+G F  ++  L + R+ ++W+PNV     P+      T+P L   R ++PPL G+D++P++ F L+  + +I+
Subjt:  FLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEIL

Q8RWM7 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic

1.1e-40

65.44

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Query:  PLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIP
        P+  A+ +  E A T    ++  + + S+ + +++LADLDP TAKLAIG LGP  S F FLFI RIVMSWYP +PV KFPYV+AY PTEP+L  TRKVIP
Subjt:  PLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIP

Query:  PLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ
        PLAGVDVTPVVWFGLVSFL+EIL+GPQGLLVL+SQQ
Subjt:  PLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G27990.1 YGGT family protein

2.2e-04

29.11

Show/hide

Query:  LGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAG-VDVTPVVWFGLVSFLNEILLGPQG
        L  +  ++S + + R+++SW+PN+P  + P        +P L   R +IPP+   +DV+P++ F ++  L  IL   +G
Subjt:  LGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAG-VDVTPVVWFGLVSFLNEILLGPQG

AT5G36120.1 cofactor assembly, complex C (B6F)

7.8e-42

65.44

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Query:  PLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIP
        P+  A+ +  E A T    ++  + + S+ + +++LADLDP TAKLAIG LGP  S F FLFI RIVMSWYP +PV KFPYV+AY PTEP+L  TRKVIP
Subjt:  PLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFSLFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIP

Query:  PLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ
        PLAGVDVTPVVWFGLVSFL+EIL+GPQGLLVL+SQQ
Subjt:  PLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ

Sequences

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CDS sequence

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ATGGCCGCCGCCTGCTCCTCCCTCTCCTCAATTCGAAGAGGCTTCAAGTATCATCCTCAAAGAAATCCAAACTGCAGATTCCAAGCAATCCAATGTAGCTCATCTTTGTT
GGGTTCTTTTACCTCTTCCAAGATTCATCTGTCATTGGCCTATGCCACTCCTCCATTAAAGCCAGCTTCTGCTGCTGCATATGAAGTTGCAAGGACTATTCCCATAGCCT
TGCAAGATGCATCAATGGCGGCCTCTGATTTCATGAACAGTATGACCCTGGCTGACCTCGACCCAGCAACGGCAAAGCTTGCGATCGGCTTTCTAGGGCCGTTTTTCTCA
CTATTTTCGTTTTTGTTTATTGCGAGAATAGTAATGTCCTGGTATCCCAATGTGCCTGTGGGGAAGTTTCCATATGTTATAGCTTATGTCCCCACTGAGCCACTTCTAAC
TGCAACAAGGAAGGTGATCCCTCCTCTCGCTGGAGTTGACGTAACGCCAGTTGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGCCCCCAAGGATTGC
TTGTCCTCCTTTCTCAACAGGTCAGCTGA

mRNA sequence

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GTGACAATCAAATCATAAATCCTCCATATCTGTTTGGCAAACCATAACCGCCCATTGAAGATAAAAGGATAGCCTTTGCCGGAGCTCCTCTGCGACAGCCATGGCCGCCG
CCTGCTCCTCCCTCTCCTCAATTCGAAGAGGCTTCAAGTATCATCCTCAAAGAAATCCAAACTGCAGATTCCAAGCAATCCAATGTAGCTCATCTTTGTTGGGTTCTTTT
ACCTCTTCCAAGATTCATCTGTCATTGGCCTATGCCACTCCTCCATTAAAGCCAGCTTCTGCTGCTGCATATGAAGTTGCAAGGACTATTCCCATAGCCTTGCAAGATGC
ATCAATGGCGGCCTCTGATTTCATGAACAGTATGACCCTGGCTGACCTCGACCCAGCAACGGCAAAGCTTGCGATCGGCTTTCTAGGGCCGTTTTTCTCACTATTTTCGT
TTTTGTTTATTGCGAGAATAGTAATGTCCTGGTATCCCAATGTGCCTGTGGGGAAGTTTCCATATGTTATAGCTTATGTCCCCACTGAGCCACTTCTAACTGCAACAAGG
AAGGTGATCCCTCCTCTCGCTGGAGTTGACGTAACGCCAGTTGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGCCCCCAAGGATTGCTTGTCCTCCT
TTCTCAACAGGTCAGCTGAGTCTTGAGATGCTTTGGAGAAACATTTTTGTTTCCTTGTTTAAAGTTCATATCTGTAAGATTCTTCATGTTCTGTATATGTAATTGATATT
CTTAGCTGCTGAGGCTCTTTGGTTAAATCAAGCATCGTTTGAAAATTTAATCTACCGAACCGATCGAACTTCCCATCTAAAAAGATGGTCAAGATTACATTACAATTGAA
TACTATGTTGGTTCTTGTAC

Protein sequence

Show/hide protein sequence

MAAACSSLSSIRRGFKYHPQRNPNCRFQAIQCSSSLLGSFTSSKIHLSLAYATPPLKPASAAAYEVARTIPIALQDASMAASDFMNSMTLADLDPATAKLAIGFLGPFFS
LFSFLFIARIVMSWYPNVPVGKFPYVIAYVPTEPLLTATRKVIPPLAGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

Sed0026401 (gene) of Chayote v1 genome