CuGenDBv2

Gene ID	Sed0026407
Organism	Sechium edule (Chayote v1)
Description	ribonuclease H2 subunit C
Genome location	LG01:14552884..14555329
RNA-Seq Expression	Sed0026407
Synteny	Sed0026407
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-70

80.72

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Query:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC
        MD EN + +E IVDF    +S AVDLSGKVHQLPCA+K DGPCSVS +FKPKSTG+EVDGL VE AYFRGRKLQGATISLPEGYSGYVIGRKS GKRKA 
Subjt:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC

Query:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS
        +ES+DSS WQVKAKFENITYWNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL +AS ALKNMS
Subjt:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

5.3e-70

80.12

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Query:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC
        MD E  + +E IVDF    +S AVDLSGKVHQLPCA+K DGPCSVS +FKPKSTG+EVDGL VE AYFRGRKLQGATISLPEGYSGYVIGRKS GKRKA 
Subjt:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC

Query:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS
        +ES+DSS WQVKAKFENITYWNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL +AS ALKNMS
Subjt:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS

XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]

7.7e-69

78.92

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Query:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC
        MD E  + +E IVDF    +S AVDLSGKVHQLPCA+K DGPCSVS +FKPKSTG+EVDGL V+ AYFRGRKLQGATISLPEGY GYVIGRKSL KRKA 
Subjt:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC

Query:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS
        +ES+DSS WQVKAKFENITYWNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL  AS ALKNMS
Subjt:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS

XP_023519278.1 uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo]

1.0e-68

78.92

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Query:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC
        MD E+ + +E IVDF    +S  VDLSGKVHQLPCA+K DGPCSVS +FKPKSTG+EVDGL VE AYFRGRKLQGATISLPEGYSGYVIGRKS GKRKA 
Subjt:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC

Query:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS
        +ES+DSS WQVKAKFENITYWNH  LP+QDDTF RSFHWLTVAQALH+P TAEDL +AS ALKNMS
Subjt:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]

3.5e-69

78.92

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Query:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC
        M+ EN +  E IVDF    +S A+DLSGKVHQLPCAIK DGPCSVS +FKPKSTG+E DGL VEEAYFRGRKLQGATISLPEGYSGYV+G+KSLGKRKA 
Subjt:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC

Query:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS
        ++ ++SSPWQVKAKF NITYWNH  LPSQDDTF+RSFHWLTVAQALH+PVTAEDL SAS ALKNMS
Subjt:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C9A8 uncharacterized protein C12B10.15c

8.3e-69

75.6

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Query:  MDEENGKAKEAIVDF------NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRK
        M+ +NG+  EA VDF      +  A+DLSGK+HQLPC IK DGPC VSH+FKPKSTG+EVDGL VEEAYFRGRKLQGATISLPEGYSGYV+G+KSLGK K
Subjt:  MDEENGKAKEAIVDF------NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRK

Query:  ACDESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS
        + D+ +DSSPWQVKAKF+NITYWNH  LPSQDDTF+R+FHWLTVAQALH+PVTAEDL SASAAL N+S
Subjt:  ACDESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

8.3e-69

75.6

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Query:  MDEENGKAKEAIVDF------NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRK
        M+ +NG+  EA VDF      +  A+DLSGK+HQLPC IK DGPC VSH+FKPKSTG+EVDGL VEEAYFRGRKLQGATISLPEGYSGYV+G+KSLGK K
Subjt:  MDEENGKAKEAIVDF------NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRK

Query:  ACDESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS
        + D+ +DSSPWQVKAKF+NITYWNH  LPSQDDTF+R+FHWLTVAQALH+PVTAEDL SASAAL N+S
Subjt:  ACDESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS

A0A6J1CLH6 ribonuclease H2 subunit C

6.0e-67

77.71

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Query:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC
        MD EN + +E IVD     +S AVDLSGKVHQLPC +KLDGPCSVSH+FKPK TG+EVDGL VEEAYFRGRKLQGATISLPEGYSG+V+GRK LGKRKA 
Subjt:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC

Query:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS
        ++S+DS  W+VKAKF NITYWNH  LPSQDD FRRSFHWLTVAQALHQPVTAEDL SAS A K+MS
Subjt:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS

A0A6J1EN41 uncharacterized protein C12B10.15c

2.6e-70

80.12

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Query:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC
        MD E  + +E IVDF    +S AVDLSGKVHQLPCA+K DGPCSVS +FKPKSTG+EVDGL VE AYFRGRKLQGATISLPEGYSGYVIGRKS GKRKA 
Subjt:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC

Query:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS
        +ES+DSS WQVKAKFENITYWNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL +AS ALKNMS
Subjt:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS

A0A6J1KH29 uncharacterized protein C12B10.15c

3.7e-69

78.92

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Query:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC
        MD E  + +E IVDF    +S AVDLSGKVHQLPCA+K DGPCSVS +FKPKSTG+EVDGL V+ AYFRGRKLQGATISLPEGY GYVIGRKSL KRKA 
Subjt:  MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKAC

Query:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS
        +ES+DSS WQVKAKFENITYWNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL  AS ALKNMS
Subjt:  DESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

6.7e-07

28.24

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Query:  IVDFNSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVI-GRKSLGKRKACDESEDSSPWQVKAK
        IV    A      K   LPC I  DGP  V  +F  K   +  +         RGR+L G  + LPE Y+G V+     L   +  ++    S W + + 
Subjt:  IVDFNSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVI-GRKSLGKRKACDESEDSSPWQVKAK

Query:  FENITYWNHGAL-PSQDDTFRRS-FHWLTVA
        FE +  WN   +  S+ D ++R    W+  A
Subjt:  FENITYWNHGAL-PSQDDTFRRS-FHWLTVA

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

5.4e-52

61.78

Show/hide

Query:  VDFNSAA-----VDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKS----LGKRKACDESEDSS
        +DF +AA     VDLS +VHQLPC I+ DGP  VSH+FKPKS+ VE+DG+  EEA+FRGRKLQGATISLP GYSG+V+ + S     GKRKA   +ED+ 
Subjt:  VDFNSAA-----VDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKS----LGKRKACDESEDSS

Query:  PWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKN
         W+VKAKF N+TYWNH +LPS+DDTF RSFHW ++A+ALH+PV  EDLV+ S   KN
Subjt:  PWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKN

Sequences

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CDS sequence

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ATGGACGAAGAAAACGGGAAGGCAAAGGAAGCAATCGTGGATTTCAATTCTGCAGCCGTCGATCTCAGCGGCAAAGTTCATCAGCTTCCCTGTGCCATCAAATTAGACGG
CCCCTGCTCCGTCTCTCATCATTTCAAGCCTAAATCCACCGGAGTTGAGGTTGATGGTTTGGGCGTCGAGGAAGCTTATTTCCGAGGAAGAAAGTTGCAGGGTGCCACCA
TTTCCCTTCCCGAAGGTTACTCTGGCTATGTGATAGGGAGGAAAAGTCTTGGAAAGAGAAAAGCTTGTGACGAGTCCGAAGACTCAAGTCCTTGGCAGGTGAAGGCCAAA
TTTGAGAACATTACATATTGGAACCATGGCGCCCTGCCTTCGCAAGATGATACGTTCCGGCGTTCTTTTCACTGGCTCACTGTTGCACAAGCATTGCACCAACCGGTGAC
AGCAGAAGACTTAGTATCTGCATCTGCTGCTCTCAAGAACATGAGTTGA

mRNA sequence

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TAATTTTTGAGCGGGAAAATCGATCTGAATGCTGAAAAGAGCGGGAAGGGTAGAATCTGTAGAAGAAATGGGCGATTGAATTTCGTCGCCATTAATCGGAAGCATCAACG
AGGGGTTAGGGTTTCTGAATTTGGGACTGCTTCAGAATTCGATCTAATGGACGAAGAAAACGGGAAGGCAAAGGAAGCAATCGTGGATTTCAATTCTGCAGCCGTCGATC
TCAGCGGCAAAGTTCATCAGCTTCCCTGTGCCATCAAATTAGACGGCCCCTGCTCCGTCTCTCATCATTTCAAGCCTAAATCCACCGGAGTTGAGGTTGATGGTTTGGGC
GTCGAGGAAGCTTATTTCCGAGGAAGAAAGTTGCAGGGTGCCACCATTTCCCTTCCCGAAGGTTACTCTGGCTATGTGATAGGGAGGAAAAGTCTTGGAAAGAGAAAAGC
TTGTGACGAGTCCGAAGACTCAAGTCCTTGGCAGGTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGGCGCCCTGCCTTCGCAAGATGATACGTTCCGGCGTT
CTTTTCACTGGCTCACTGTTGCACAAGCATTGCACCAACCGGTGACAGCAGAAGACTTAGTATCTGCATCTGCTGCTCTCAAGAACATGAGTTGATAATTGTCACGTGGC
TCCGATAAGGAAATTTCTATTATTTCGGTAGTATAAAATGATTCGACATGGTTTGTACTCTGATTTATATTTTGTCAATGTTATCTACCTTACCAATTAATTTAACAGGT
TTTGCATGCCAAGATGTGTTGCTAGCGACAATAATGTAGAACAGTAGAAGAATTTTAAAGCATGGTAGTTTAAGAAGTATGATTTACATATTATTTTAGTAAC

Protein sequence

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MDEENGKAKEAIVDFNSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKACDESEDSSPWQVKAK
FENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS

Sed0026407 (gene) of Chayote v1 genome